class |
Bacilli
|
|
|
class |
Clostridia
|
|
|
family |
Acidaminococcaceae
|
|
|
family |
Atopobiaceae
|
|
|
family |
Bacteroidaceae
|
|
|
family |
Barnesiellaceae
|
|
|
family |
Christensenellaceae
|
|
|
family |
Clostridiaceae
|
|
|
family |
Desulfobulbaceae
|
|
|
family |
Desulfovibrionaceae
|
|
|
family |
Eggerthellaceae
|
|
|
family |
Erysipelotrichaceae
|
|
|
family |
Lachnospiraceae
|
|
|
family |
Muribaculaceae
|
|
|
family |
Oscillospiraceae
|
|
|
family |
Paludibacteraceae
|
|
|
family |
Peptococcaceae
|
|
|
family |
Rikenellaceae
|
|
|
family |
Ruminococcaceae
|
|
|
genus |
Abiotrophia
|
|
|
genus |
Acidaminococcus
|
|
|
genus |
Actinomyces
|
|
|
genus |
Agathobacter
|
|
|
genus |
Akkermansia
|
|
|
genus |
Alistipes
|
|
|
genus |
Anaerococcus
|
|
|
genus |
Anaerostipes
|
|
|
genus |
Anaerotruncus
|
|
|
genus |
Angelakisella
|
|
|
genus |
Bacteroides
|
|
|
genus |
Barnesiella
|
|
|
genus |
Bifidobacterium
|
|
|
genus |
Bilophila
|
|
|
genus |
Blautia
|
|
|
genus |
Bradyrhizobium
|
|
|
genus |
Butyricicoccus
|
|
|
genus |
Campylobacter
|
|
|
genus |
Candidatus Homeothermus
|
|
|
genus |
Clostridium
|
|
|
genus |
Collinsella
|
|
|
genus |
Desulfovibrio
|
|
|
genus |
Dialister
|
|
|
genus |
Dorea
|
|
|
genus |
Enterococcus
|
|
|
genus |
Erysipelatoclostridium
|
|
|
genus |
Escherichia
|
|
|
genus |
Eubacterium
|
|
|
genus |
Faecalibacterium
|
|
|
genus |
Faecalicoccus
|
|
|
genus |
Flavonifractor
|
|
|
genus |
Fournierella
|
|
|
genus |
Fusobacterium
|
|
|
genus |
Gemella
|
|
|
genus |
Haemophilus
|
|
|
genus |
Intestinimonas
|
|
|
genus |
Klebsiella
|
|
|
genus |
Lachnospira
|
|
|
genus |
Leptotrichia
|
|
|
genus |
Libanicoccus
|
|
|
genus |
Megasphaera
|
|
|
genus |
Merdibacter
|
|
|
genus |
Methanobrevibacter
|
|
|
genus |
Mogibacterium
|
|
|
genus |
Neglecta
|
|
|
genus |
Odoribacter
|
|
|
genus |
Oscillibacter
|
|
|
genus |
Parabacteroides
|
|
|
genus |
Parvimonas
|
|
|
genus |
Peptostreptococcus
|
|
|
genus |
Phocea
|
|
|
genus |
Porphyromonas
|
|
|
genus |
Prevotella
|
|
|
genus |
Prevotellamassilia
|
|
|
genus |
Pseudoflavonifractor
|
|
|
genus |
Pseudomonas
|
|
|
genus |
Pseudoramibacter
|
|
|
genus |
Rothia
|
|
|
genus |
Rothia
|
|
|
genus |
Ruminiclostridium
|
|
|
genus |
Ruminococcus
|
|
|
genus |
Ruthenibacterium
|
|
|
genus |
Sellimonas
|
|
|
genus |
Shigella
|
|
|
genus |
Shuttleworthia
|
|
|
genus |
Stomatobaculum
|
|
|
genus |
Streptococcus
|
|
|
genus |
Subdoligranulum
|
|
|
genus |
Succiniclasticum
|
|
|
genus |
Succinivibrio
|
|
|
genus |
Sutterella
|
|
|
genus |
Syntrophomonas
|
|
|
genus |
Variovorax
|
|
|
genus |
Veillonella
|
|
|
order |
Bacteroidales
|
|
|
order |
Flavobacteriales
|
|
|
order |
Opitutales
|
|
|
species |
[Bacteroides] pectinophilus
|
|
|
species |
[Clostridium] asparagiforme
|
|
|
species |
[Clostridium] hylemonae
|
|
|
species |
[Clostridium] symbiosum
|
|
|
species |
[Eubacterium] cellulosolvens
|
|
|
species |
[Hallella] seregens
|
|
|
species |
[Ruminococcus] torques
|
|
|
species |
Abiotrophia sp.
|
|
|
species |
Acidaminococcus intestini
|
|
|
species |
Actinomyces naeslundii
|
|
|
species |
Akkermansia sp.
|
|
|
species |
Alistipes finegoldii
|
|
|
species |
Alistipes indistinctus
|
|
|
species |
Alistipes onderdonkii
|
|
|
species |
Alistipes putredinis
|
|
|
species |
Alistipes sp.
|
|
|
species |
Allisonella histaminiformans
|
|
|
species |
Alloprevotella rava
|
|
|
species |
Anaerococcus obesiensis
|
|
|
species |
Anaerococcus vaginalis
|
|
|
species |
Anaerostipes hadrus
|
|
|
species |
Anaerostipes sp.
|
|
|
species |
Anaerotruncus sp.
|
|
|
species |
Aquaspirillum dispar
|
|
|
species |
ATCC 49918
|
|
|
species |
Bacteroides barnesiae
|
|
|
species |
Bacteroides caccae
|
|
|
species |
Bacteroides clarus
|
|
|
species |
Bacteroides coprophilus
|
|
|
species |
Bacteroides dorei
|
|
|
species |
Bacteroides eggerthii
|
|
|
species |
Bacteroides faecis
|
|
|
species |
Bacteroides fluxus
|
|
|
species |
Bacteroides fragilis
|
|
|
species |
Bacteroides gallinarum
|
|
|
species |
Bacteroides helcogenes
|
|
|
species |
Bacteroides intestinalis
|
|
|
species |
Bacteroides massiliensis
|
|
|
species |
Bacteroides nordii
|
|
|
species |
Bacteroides ovatus
|
|
|
species |
Bacteroides pyogenes
|
|
|
species |
Bacteroides reticulotermitis
|
|
|
species |
Bacteroides salyersiae
|
|
|
species |
Bacteroides sartorii
|
|
|
species |
Bacteroides sp.
|
|
|
species |
Bacteroides stercoris
|
|
|
species |
Bacteroides vulgatus
|
|
|
species |
Bacteroides xylanisolvens
|
|
|
species |
Barnesiella intestinihominis
|
|
|
species |
Bifidobacterium animalis
|
|
|
species |
Bifidobacterium sp.
|
|
|
species |
Bilophila wadsworthia
|
|
|
species |
Blautia hydrogenotrophica
|
|
|
species |
Blautia sp.
|
|
|
species |
Bradyrhizobium sp.
|
|
|
species |
Butyricicoccus pullicaecorum
|
|
|
species |
Butyricimonas sp.
|
|
|
species |
Butyricimonas virosa
|
|
|
species |
Campylobacter rectus
|
|
|
species |
Campylobacter ureolyticus
|
|
|
species |
Candidatus Bacteroides periocalifornicus
|
|
|
species |
Catabacter hongkongensis
|
|
|
species |
Catenibacterium sp.
|
|
|
species |
CCUG 45813
|
|
|
species |
CCUG 46149
|
|
|
species |
Cloacibacillus porcorum
|
|
|
species |
Clostridium celatum
|
|
|
species |
Clostridium perfringens
|
|
|
species |
Clostridium sp.
|
|
|
species |
Collinsella intestinalis
|
|
|
species |
Collinsella sp.
|
|
|
species |
Coprobacter fastidiosus
|
|
|
species |
Coprococcus eutactus
|
|
|
species |
Coprococcus sp.
|
|
|
species |
Cronobacter sakazakii
|
|
|
species |
CSUR P3241
|
|
|
species |
Desulfovibrio desulfuricans
|
|
|
species |
Desulfovibrio sp.
|
|
|
species |
Desulfovibrio vulgaris
|
|
|
species |
Dialister invisus
|
|
|
species |
Dialister pneumosintes
|
|
|
species |
Dialister sp.
|
|
|
species |
Dorea sp.
|
|
|
species |
DSM 103034
|
|
|
species |
Eikenella corrodens
|
|
|
species |
Eisenbergiella sp.
|
|
|
species |
Emergencia sp.
|
|
|
species |
Enorma massiliensis
|
|
|
species |
Enorma sp.
|
|
|
species |
Enterobacter cloacae
|
|
|
species |
Enterococcus faecium
|
|
|
species |
Enterococcus hirae
|
|
|
species |
Enterococcus sp.
|
|
|
species |
Escherichia coli
|
|
|
species |
Escherichia sp.
|
|
|
species |
Eubacterium sp.
|
|
|
species |
Faecalibacterium sp.
|
|
|
species |
Faecalicoccus pleomorphus
|
|
|
species |
Flavonifractor plautii
|
|
|
species |
Flavonifractor sp.
|
|
|
species |
Fournierella sp.
|
|
|
species |
Fusobacterium nucleatum
|
|
|
species |
Fusobacterium sp.
|
|
|
species |
Gemella bergeri
|
|
|
species |
Gemella morbillorum
|
|
|
species |
Haemophilus parainfluenzae
|
|
|
species |
Helicobacter pylori
|
|
|
species |
Holdemanella biformis
|
|
|
species |
Holdemanella sp.
|
|
|
species |
Holdemania filiformis
|
|
|
species |
Hungatella hathewayi
|
|
|
species |
Intestinimonas butyriciproducens
|
|
|
species |
Intestinimonas sp.
|
|
|
species |
Klebsiella oxytoca
|
|
|
species |
Kluyvera intermedia
|
|
|
species |
Lachnospira pectinoschiza
|
|
|
species |
Lachnospira sp.
|
|
|
species |
Lactobacillus animalis
|
|
|
species |
Lactobacillus salivarius
|
|
|
species |
Lactococcus piscium
|
|
|
species |
Leminorella grimontii
|
|
|
species |
Leptotrichia sp.
|
|
|
species |
Leptotrichia trevisanii
|
|
|
species |
Leuconostoc citreum
|
|
|
species |
Megasphaera micronuciformis
|
|
|
species |
Megasphaera sp.
|
|
|
species |
Merdibacter massiliensis
|
|
|
species |
Methanobrevibacter smithii
|
|
|
species |
Micromonas sp. (in: Bacteria)
|
|
|
species |
Mogibacterium sp.
|
|
|
species |
Negativicoccus massiliensis Togo et al. 2016
|
|
|
species |
Neglecta sp.
|
|
|
species |
Odoribacter laneus
|
|
|
species |
Odoribacter sp.
|
|
|
species |
Odoribacter splanchnicus
|
|
|
species |
Oscillibacter ruminantium
|
|
|
species |
Oscillibacter sp.
|
|
|
species |
Parabacteroides distasonis
|
|
|
species |
Parabacteroides johnsonii
|
|
|
species |
Parabacteroides merdae
|
|
|
species |
Parabacteroides sp.
|
|
|
species |
Paraprevotella clara
|
|
|
species |
Paraprevotella sp.
|
|
|
species |
Parvimonas micra
|
|
|
species |
Pediococcus acidilactici
|
|
|
species |
Peptoniphilus sp.
|
|
|
species |
Peptostreptococcus anaerobius
|
|
|
species |
Peptostreptococcus sp.
|
|
|
species |
Peptostreptococcus stomatis
|
|
|
species |
Phascolarctobacterium sp.
|
|
|
species |
Porphyromonas asaccharolytica
|
|
|
species |
Porphyromonas catoniae
|
|
|
species |
Porphyromonas somerae
|
|
|
species |
Porphyromonas sp.
|
|
|
species |
Porphyromonas uenonis
|
|
|
species |
Prevotella copri
|
|
|
species |
Prevotella corporis
|
|
|
species |
Prevotella denticola
|
|
|
species |
Prevotella histicola
|
|
|
species |
Prevotella intermedia
|
|
|
species |
Prevotella micans
|
|
|
species |
Prevotella oralis
|
|
|
species |
Prevotella saccharolytica
|
|
|
species |
Prevotella sp.
|
|
|
species |
Proteus vulgaris
|
|
|
species |
Pseudoflavonifractor capillosus
|
|
|
species |
Pseudoflavonifractor sp.
|
|
|
species |
Pseudoramibacter sp.
|
|
|
species |
Raoultella sp.
|
|
|
species |
Rikenella microfusus
|
|
|
species |
Rothia dentocariosa
|
|
|
species |
Ruminiclostridium sp.
|
|
|
species |
Ruminococcaceae bacterium D16
|
|
|
species |
Ruminococcus sp.
|
|
|
species |
Salmonella enterica
|
|
|
species |
Sanguibacteroides justesenii
|
|
|
species |
Selenomonas artemidis
|
|
|
species |
Selenomonas sputigena
|
|
|
species |
Shigella sonnei
|
|
|
species |
Streptococcus dysgalactiae
|
|
|
species |
Streptococcus G418
|
|
|
species |
Streptococcus gallolyticus
|
|
|
species |
Streptococcus mitis
|
|
|
species |
Streptococcus pseudopneumoniae
|
|
|
species |
Streptococcus sanguinis
|
|
|
species |
Subdoligranulum sp.
|
|
|
species |
Subdoligranulum variabile
|
|
|
species |
Succinivibrio sp.
|
|
|
species |
Sutterella sp.
|
|
|
species |
Sutterella wadsworthensis
|
|
|
species |
Syntrophomonas sp.
|
|
|
species |
Tannerella forsythia
|
|
|
species |
Tyzzerella nexilis
|
|
|
species |
Variovorax sp.
|
|
|
species |
Veillonella dispar
|
|
|
species |
Veillonella sp.
|
|
|
species |
Victivallis vadensis
|
|
|
species |
Yersinia ruckeri
|
|
|