Gammaproteobacteria Details: NCBI 1236, gram-negative or unknown [class]
| g-proteobacteria| gamma proteobacteria| gamma subdivision| gamma subgroup| Gammaproteobacteria| Gammaproteobacteria Garrity et al. 2005 emend. Williams and Kelly 2013| Proteobacteria gamma subdivision| Purple bacteria, gamma subdivision
Pathogenic Species: Several pathogenic bacteria belong to the class Gammaproteobacteria. These can cause a range of infections and diseases in humans. Examples of pathogenic bacteria within this class include Escherichia coli (E. coli), Salmonella spp., Shigella spp., and Pseudomonas aeruginosa. Infections with these bacteria can lead to gastrointestinal issues, urinary tract infections, respiratory infections, and other illnesses.
Beneficial Roles: While some Gammaproteobacteria are associated with infections, others play beneficial roles in various environmental processes. For example, certain members of this class are involved in nitrogen fixation, which is crucial for making nitrogen available to plants and supporting ecosystems.
Nitrogen Cycling: Some Gammaproteobacteria, such as certain species of Pseudomonas, play a role in nitrogen cycling by participating in the conversion of atmospheric nitrogen into forms usable by plants. This process is essential for the fertility of soil and the growth of plants.
Bioremediation: Certain members of Gammaproteobacteria, particularly Pseudomonas species, have been studied for their ability to degrade pollutants and participate in bioremediation processes. They can break down or transform various environmental contaminants.
Symbiotic Relationships: Some bacteria within Gammaproteobacteria form symbiotic relationships with host organisms. For instance, certain species of Vibrio are symbiotic with marine animals, such as certain types of fish and squid, playing a role in nutrient cycling and providing benefits to their hosts.
Marine and Aquatic Environments: Gammaproteobacteria are commonly found in marine and aquatic environments. They contribute to the microbial communities in oceans, seas, and freshwater systems, participating in nutrient cycling and ecological processes.
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Other Sources for more information:
- Immune Epitope Database
- The NCBI taxonomy database
- UniProt
- Immune Epitope Taxonomy Database (IEDB)
- AI Engines For more Details: Perplexity Kagi Labs You
 Statistics
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NCBI | Data Punk | End Products Produced |
Lab Reporting
Different labs use different software to read the sample. See this post for more details.
One lab may say you have none, another may say you have a lot! - This may be solely due to the software they are using to estimate.
We deem lab specific values using values from the KM method for each specific lab to be the most reliable.
Desired Levels Suggestions for Gammaproteobacteria
- Frequency - how often do samples show this bacteria
- UD - An alternative statistical algorithm (which factors in the frequency)
- Kaltoft-Moldrup Heuristic Using uploaded data
- Lab Low and High are calculated using the formula that most labs use: Mean - 2 Standard Deviation to Mean + 2 Standard Deviation
| Lab | Frequency | UD-Low | UD-High | KM Low | KM High | Lab Low | Lab High | Mean | Median | Standard Deviation | Box Plot Low | Box Plot High | KM Percentile Low | KM Percentile High |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Other Labs | 7.46 | 0 | 0 | 1 | 376847 | 0 | 152980 | 32026.5 | 5310 | 61711.2 | 0 | 50630 | 0 %ile | 100 %ile |
| biomesight | 93.55 | 280 | 11330 | 930 | 12070 | 0 | 90131 | 13311.8 | 2955 | 39193.5 | 0 | 12940 | 10.3 %ile | 91.1 %ile |
| thorne | 100 | 1687 | 306872 | 0 | 130161 | 19778 | 5501 | 56318 | 919 | 14027 | 0 %ile | 100 %ile | ||
| thryve | 99.82 | 154 | 9937 | 296 | 7133 | 0 | 54592 | 6530.5 | 1638 | 24521.2 | 0 | 8695 | 11 %ile | 90.5 %ile |
| ubiome | 91.13 | 12803 | 162 | 15081 | 0 | 77517 | 13549.8 | 2164 | 32636.2 | 0 | 18454 | 8 %ile | 92 %ile |
External Reference Ranges for Gammaproteobacteria
| Source of Ranges | Low Boundary | High Boundary | Low Boundary %age | High Boundary %age |
|---|---|---|---|---|
| Thorne (20/80%ile) | 1582.8 | 3563.4 | 0.1583 | 0.3563 |
Statistic by Lab Source for Gammaproteobacteria
| Lab | Frequency Seen | Average | Standard Deviation | Sample Count | Lab Samples |
|---|---|---|---|---|---|
| AmericanGut | 100 % | 6.328 % | 9.817 % | 15.0 | 15 |
| BiomeSight | 99.865 % | 1.416 % | 4.475 % | 2959.0 | 2963 |
| BiomeSightRdp | 100 % | 0.417 % | 1.188 % | 31.0 | 31 |
| bugspeak | 100 % | 0.531 % | % | 1.0 | 1 |
| CerbaLab | 100 % | 0.03 % | 0.052 % | 3.0 | 3 |
| CosmosId | 93.75 % | 1.175 % | 2.275 % | 30.0 | 32 |
| custom | 75.41 % | 4.827 % | 7.443 % | 46.0 | 61 |
| es-xenogene | 96.552 % | 1.889 % | 3.64 % | 28.0 | 29 |
| GanzimmunDiag | 100 % | 0.688 % | 0 % | 3.0 | 3 |
| Medivere | 100 % | 6.009 % | 3.132 % | 7.0 | 7 |
| Microba | 89.286 % | 0.898 % | 1.161 % | 25.0 | 28 |
| Microba1 | 100 % | 0.12 % | % | 1.0 | 1 |
| SequentiaBiotech | 100 % | 6.567 % | 10.031 % | 36.0 | 36 |
| Thorne | 88.462 % | 1.001 % | 3.293 % | 92.0 | 104 |
| Thryve | 99.856 % | 0.586 % | 2.21 % | 1388.0 | 1390 |
| Tiny | 100 % | 0.67 % | 0.939 % | 2.0 | 2 |
| uBiome | 90.783 % | 1.355 % | 3.264 % | 719.0 | 792 |
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Foods Containing the Gammaproteobacteria bacteria
Data comes from FoodMicrobionet. For the meaning of weight, see that site. The bacteria does not need to be alive to have an effect.
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