class
|
Acidobacteriia
|
10
|
4
|
class
|
Acidobacteriia
|
1
|
0
|
class
|
Alphaproteobacteria
|
1
|
2
|
class
|
Anaerolineae
|
1
|
0
|
class
|
Bacilli
|
6
|
3
|
class
|
Bacteroidia
|
10
|
9
|
class
|
Betaproteobacteria
|
2
|
0
|
class
|
Chlamydiia
|
1
|
0
|
class
|
Chloroflexia
|
2
|
0
|
class
|
Clostridia
|
15
|
9
|
class
|
Coriobacteriia
|
3
|
13
|
class
|
Deferribacteres
|
2
|
0
|
class
|
Deinococci
|
0
|
1
|
class
|
Deltaproteobacteria
|
2
|
17
|
class
|
Dothideomycetes
|
1
|
0
|
class
|
Epsilonproteobacteria
|
1
|
4
|
class
|
Erysipelotrichia
|
1
|
4
|
class
|
Fibrobacteria
|
0
|
2
|
class
|
Flavobacteriia
|
0
|
4
|
class
|
Fusobacteriia
|
2
|
0
|
class
|
Gammaproteobacteria
|
4
|
2
|
class
|
Kiritimatiellae
|
2
|
0
|
class
|
Lentisphaeria
|
0
|
1
|
class
|
Mollicutes
|
1
|
0
|
class
|
Negativicutes
|
1
|
9
|
class
|
Sphingobacteriia
|
0
|
4
|
class
|
Spirochaetia
|
1
|
0
|
class
|
Tissierellia
|
0
|
4
|
class
|
Verrucomicrobiae
|
3
|
4
|
family
|
Acidaminococcaceae
|
7
|
5
|
family
|
Actinomycetaceae
|
1
|
1
|
family
|
Aerococcaceae
|
1
|
0
|
family
|
Akkermansiaceae
|
1
|
0
|
family
|
Alcaligenaceae
|
0
|
7
|
family
|
Anaerolineaceae
|
1
|
0
|
family
|
Atopobiaceae
|
2
|
0
|
family
|
Bacillaceae
|
0
|
5
|
family
|
Bacteroidaceae
|
11
|
2
|
family
|
Barnesiellaceae
|
3
|
0
|
family
|
Bifidobacteriaceae
|
6
|
1
|
family
|
Burkholderiaceae
|
1
|
36
|
family
|
Campylobacteraceae
|
1
|
1
|
family
|
Candidatus Homeothermaceae
|
5
|
0
|
family
|
Carnobacteriaceae
|
2
|
0
|
family
|
Catabacteriaceae
|
2
|
0
|
family
|
Chitinophagaceae
|
1
|
0
|
family
|
Christensenellaceae
|
10
|
0
|
family
|
Clostridiaceae
|
10
|
2
|
family
|
Clostridiales Family IV. Incertae Sedis
|
1
|
0
|
family
|
Clostridiales Family XI. Incertae Sedis
|
1
|
0
|
family
|
Clostridiales Family XIII. Incertae Sedis
|
0
|
4
|
family
|
Clostridiales incertae sedis
|
0
|
5
|
family
|
Comamonadaceae
|
2
|
4
|
family
|
Coriobacteriaceae
|
4
|
11
|
family
|
Corynebacteriaceae
|
1
|
8
|
family
|
Dermabacteraceae
|
1
|
0
|
family
|
Desulfobacteraceae
|
0
|
1
|
family
|
Desulfobulbaceae
|
2
|
0
|
family
|
Desulfovibrionaceae
|
5
|
14
|
family
|
Desulfuromonadaceae
|
0
|
3
|
family
|
Eggerthellaceae
|
5
|
2
|
family
|
Elusimicrobiaceae
|
2
|
0
|
family
|
Enterobacteriaceae
|
20
|
15
|
family
|
Enterococcaceae
|
2
|
0
|
family
|
Erysipelotrichaceae
|
14
|
0
|
family
|
Eubacteriaceae
|
3
|
16
|
family
|
Flavobacteriaceae
|
0
|
2
|
family
|
Fusobacteriaceae
|
1
|
0
|
family
|
Helicobacteraceae
|
1
|
0
|
family
|
Hyphomonadaceae
|
0
|
1
|
family
|
Lachnospiraceae
|
31
|
8
|
family
|
Lactobacillaceae
|
7
|
5
|
family
|
Methylobacteriaceae
|
1
|
0
|
family
|
Micrococcaceae
|
0
|
3
|
family
|
Moraxellaceae
|
0
|
5
|
family
|
Mycoplasmataceae
|
0
|
14
|
family
|
Neisseriaceae
|
1
|
0
|
family
|
Nocardiaceae
|
2
|
0
|
family
|
Odoribacteraceae
|
1
|
9
|
family
|
Oscillospiraceae
|
10
|
18
|
family
|
Oxalobacteraceae
|
0
|
13
|
family
|
Paludibacteraceae
|
4
|
0
|
family
|
Pasteurellaceae
|
3
|
0
|
family
|
Peptococcaceae
|
5
|
3
|
family
|
Peptoniphilaceae
|
0
|
10
|
family
|
Peptostreptococcaceae
|
4
|
16
|
family
|
Planococcaceae
|
0
|
4
|
family
|
Porphyromonadaceae
|
8
|
7
|
family
|
Prevotellaceae
|
11
|
0
|
family
|
Pseudomonadaceae
|
2
|
0
|
family
|
Rhodothermaceae
|
0
|
2
|
family
|
Rikenellaceae
|
12
|
0
|
family
|
Ruminococcaceae
|
30
|
36
|
family
|
Sphingobacteriaceae
|
0
|
1
|
family
|
Sphingomonadaceae
|
1
|
0
|
family
|
Staphylococcaceae
|
1
|
1
|
family
|
Streptococcaceae
|
4
|
2
|
family
|
Streptomycetaceae
|
1
|
0
|
family
|
Sutterellaceae
|
5
|
2
|
family
|
Tannerellaceae Ormerod et al. 2016
|
1
|
1
|
family
|
Thermoactinomycetaceae
|
0
|
3
|
family
|
Thermoanaerobacterales Family III. Incertae Sedis
|
0
|
12
|
family
|
Tissierellaceae
|
2
|
0
|
family
|
Veillonellaceae
|
7
|
3
|
family
|
Verrucomicrobiaceae
|
2
|
4
|
family
|
Victivallaceae
|
0
|
1
|
genus
|
Abiotrophia
|
5
|
0
|
genus
|
Acetatifactor
|
0
|
1
|
genus
|
Acetitomaculum
|
0
|
1
|
genus
|
Acetivibrio
|
1
|
1
|
genus
|
Acetobacter
|
1
|
0
|
genus
|
Acetobacterium
|
0
|
6
|
genus
|
Acetobacteroides
|
1
|
0
|
genus
|
Acholeplasma
|
0
|
1
|
genus
|
Acidaminococcus
|
8
|
6
|
genus
|
Acidipropionibacterium
|
1
|
0
|
genus
|
Acinetobacter
|
3
|
0
|
genus
|
Actinobacillus
|
3
|
0
|
genus
|
Actinomyces
|
9
|
0
|
genus
|
Actinopolyspora
|
1
|
0
|
genus
|
Adlercreutzia
|
9
|
2
|
genus
|
Aeriscardovia
|
1
|
0
|
genus
|
Aerococcus
|
1
|
0
|
genus
|
Aeromonas
|
1
|
0
|
genus
|
Aestuariispira
|
1
|
0
|
genus
|
Agathobacter
|
6
|
0
|
genus
|
Aggregatibacter
|
4
|
0
|
genus
|
Akkermansia
|
21
|
5
|
genus
|
Alistipes
|
25
|
0
|
genus
|
Allobaculum
|
2
|
0
|
genus
|
Alloprevotella
|
3
|
0
|
genus
|
Alloscardovia
|
2
|
0
|
genus
|
Anaerococcus
|
4
|
1
|
genus
|
Anaerofilum
|
1
|
0
|
genus
|
Anaerofustis
|
1
|
1
|
genus
|
Anaeroglobus
|
2
|
0
|
genus
|
Anaeromassilibacillus
|
2
|
0
|
genus
|
Anaeroplasma
|
2
|
0
|
genus
|
Anaerosporobacter
|
1
|
1
|
genus
|
Anaerostipes
|
12
|
4
|
genus
|
Anaerotruncus
|
9
|
15
|
genus
|
Angelakisella
|
3
|
0
|
genus
|
Asaccharobacter
|
1
|
0
|
genus
|
Atopobium
|
6
|
0
|
genus
|
Atopostipes
|
1
|
0
|
genus
|
Bacillus
|
4
|
5
|
genus
|
Bacillus
|
3
|
0
|
genus
|
Bacteroides
|
38
|
2
|
genus
|
Barnesiella
|
8
|
9
|
genus
|
Bifidobacterium
|
38
|
1
|
genus
|
Bilophila
|
13
|
2
|
genus
|
Bittarella
|
1
|
0
|
genus
|
Blautia
|
26
|
22
|
genus
|
Bradyrhizobium
|
2
|
0
|
genus
|
Brevibacterium
|
1
|
0
|
genus
|
Bulleidia
|
1
|
0
|
genus
|
Burkholderia
|
4
|
0
|
genus
|
Butyricicoccus
|
11
|
0
|
genus
|
Butyricimonas
|
7
|
16
|
genus
|
Butyrivibrio
|
8
|
1
|
genus
|
c2-like viruses
|
1
|
0
|
genus
|
Caloramator
|
1
|
0
|
genus
|
Campylobacter
|
8
|
1
|
genus
|
Candida
|
1
|
0
|
genus
|
Candidatus Homeothermus
|
4
|
0
|
genus
|
Candidatus Rhabdochlamydia
|
1
|
0
|
genus
|
Candidatus Soleaferrea
|
1
|
1
|
genus
|
Candidatus Stoquefichus
|
3
|
0
|
genus
|
Capnocytophaga
|
3
|
0
|
genus
|
Cardiobacterium
|
3
|
0
|
genus
|
Carnobacterium
|
1
|
0
|
genus
|
Catenibacterium
|
8
|
0
|
genus
|
Catonella
|
0
|
1
|
genus
|
Cellulosibacter
|
1
|
0
|
genus
|
Cellulosilyticum
|
1
|
0
|
genus
|
Centipeda
|
3
|
0
|
genus
|
Centipeda
|
3
|
0
|
genus
|
Cetobacterium
|
3
|
0
|
genus
|
Christensenella
|
3
|
0
|
genus
|
Chryseobacterium
|
2
|
0
|
genus
|
Citrobacter
|
6
|
0
|
genus
|
Cloaca
|
11
|
0
|
genus
|
Cloacibacterium
|
1
|
0
|
genus
|
Clostridioides
|
0
|
1
|
genus
|
Clostridium
|
31
|
2
|
genus
|
Collinsella
|
17
|
11
|
genus
|
Coprobacillus
|
12
|
1
|
genus
|
Coprobacter
|
2
|
1
|
genus
|
Coprococcus
|
20
|
0
|
genus
|
Coriobacterium
|
1
|
0
|
genus
|
Corynebacterium
|
8
|
4
|
genus
|
Criibacterium
|
2
|
0
|
genus
|
Cronobacter
|
1
|
0
|
genus
|
Cryptobacterium
|
2
|
0
|
genus
|
Cutibacterium
|
2
|
0
|
genus
|
Dehalobacterium
|
3
|
0
|
genus
|
Deinococcus
|
1
|
0
|
genus
|
Desulfovibrio
|
19
|
0
|
genus
|
Dialister
|
15
|
1
|
genus
|
Dielma
|
1
|
0
|
genus
|
Dorea
|
19
|
5
|
genus
|
Dysgonomonas
|
1
|
0
|
genus
|
Edwardsiella
|
1
|
0
|
genus
|
Eggerthella
|
13
|
8
|
genus
|
Eggerthia
|
1
|
0
|
genus
|
Eikenella
|
1
|
0
|
genus
|
Eisenbergiella
|
2
|
0
|
genus
|
Emergencia
|
4
|
0
|
genus
|
Enhydrobacter
|
1
|
0
|
genus
|
Enterococcus
|
21
|
1
|
genus
|
Erwinia
|
1
|
0
|
genus
|
Erysipelatoclostridium
|
9
|
35
|
genus
|
Escherichia
|
15
|
0
|
genus
|
Eubacterium
|
19
|
24
|
genus
|
Facklamia
|
1
|
1
|
genus
|
Faecalibacterium
|
35
|
48
|
genus
|
Faecalibaculum
|
1
|
0
|
genus
|
Faecalicoccus
|
1
|
0
|
genus
|
Faecalitalea
|
2
|
0
|
genus
|
Finegoldia
|
1
|
3
|
genus
|
Flavobacterium
|
3
|
0
|
genus
|
Flavonifractor
|
9
|
6
|
genus
|
Fournierella
|
5
|
0
|
genus
|
Fretibacterium
|
2
|
0
|
genus
|
Fusicatenibacter
|
2
|
1
|
genus
|
Fusobacterium
|
14
|
0
|
genus
|
Gardnerella
|
1
|
0
|
genus
|
Gelria
|
1
|
0
|
genus
|
Gemella
|
8
|
1
|
genus
|
Geosporobacter
|
1
|
0
|
genus
|
Gordonibacter
|
7
|
2
|
genus
|
Granulicatella
|
5
|
0
|
genus
|
Haemophilus
|
17
|
0
|
genus
|
Hafnia
|
1
|
0
|
genus
|
Helicobacter
|
3
|
0
|
genus
|
Herbaspirillum
|
0
|
1
|
genus
|
Hespellia
|
0
|
5
|
genus
|
Holdemanella
|
3
|
0
|
genus
|
Holdemania
|
5
|
5
|
genus
|
Howardella
|
1
|
1
|
genus
|
Hyphomicrobium
|
1
|
0
|
genus
|
Intestinibacter
|
3
|
10
|
genus
|
Intestinimonas
|
4
|
1
|
genus
|
Johnsonella
|
3
|
0
|
genus
|
Jonquetella
|
1
|
0
|
genus
|
Klebsiella
|
16
|
0
|
genus
|
Lachnoanaerobaculum
|
3
|
0
|
genus
|
Lachnobacterium
|
1
|
0
|
genus
|
Lachnoclostridium
|
3
|
0
|
genus
|
Lachnospira
|
12
|
2
|
genus
|
Lactobacillus
|
33
|
0
|
genus
|
Lactococcus
|
5
|
0
|
genus
|
Lambda-like viruses
|
1
|
0
|
genus
|
Lautropia
|
1
|
0
|
genus
|
Lawsonella
|
1
|
0
|
genus
|
Leclercia
|
1
|
0
|
genus
|
Leptotrichia
|
6
|
0
|
genus
|
Leucobacter
|
1
|
0
|
genus
|
Leuconostoc
|
3
|
0
|
genus
|
Levyella
|
1
|
0
|
genus
|
Libanicoccus
|
2
|
0
|
genus
|
Marvinbryantia
|
2
|
7
|
genus
|
Massilioclostridium
|
2
|
0
|
genus
|
Megamonas
|
11
|
0
|
genus
|
Megasphaera
|
10
|
16
|
genus
|
Merdibacter
|
4
|
0
|
genus
|
Methanobrevibacter
|
12
|
0
|
genus
|
Methanosphaera
|
3
|
0
|
genus
|
Methylobacterium
|
1
|
0
|
genus
|
Microbacterium
|
2
|
0
|
genus
|
Mitsuokella
|
4
|
0
|
genus
|
Mogibacterium
|
5
|
6
|
genus
|
Moraxella
|
1
|
0
|
genus
|
Morganella
|
2
|
0
|
genus
|
Morganella
|
1
|
0
|
genus
|
Morganella
|
1
|
0
|
genus
|
Moryella
|
0
|
15
|
genus
|
Murdochiella
|
1
|
0
|
genus
|
Murimonas
|
1
|
0
|
genus
|
Mycobacterium
|
2
|
0
|
genus
|
Mycoplana
|
1
|
0
|
genus
|
Mycoplasma
|
1
|
3
|
genus
|
Neglecta
|
3
|
0
|
genus
|
Neisseria
|
6
|
0
|
genus
|
Nissabacter
|
1
|
0
|
genus
|
Novispirillum
|
1
|
0
|
genus
|
Odoribacter
|
13
|
3
|
genus
|
Olsenella
|
7
|
0
|
genus
|
Oribacterium
|
6
|
0
|
genus
|
Oscillibacter
|
14
|
1
|
genus
|
Oscillospira
|
6
|
4
|
genus
|
Ottowia
|
2
|
0
|
genus
|
Oxalobacter
|
5
|
0
|
genus
|
Pachytichospora
|
1
|
0
|
genus
|
Paenibacillus
|
4
|
0
|
genus
|
Pantoea
|
4
|
0
|
genus
|
Papillibacter
|
0
|
3
|
genus
|
Parabacteroides
|
23
|
1
|
genus
|
Paraburkholderia
|
1
|
0
|
genus
|
Paraprevotella
|
8
|
2
|
genus
|
Parascardovia
|
1
|
0
|
genus
|
Parasutterella
|
9
|
0
|
genus
|
Parvimonas
|
10
|
0
|
genus
|
Pediococcus
|
1
|
0
|
genus
|
Pedobacter
|
1
|
10
|
genus
|
Peptoclostridium
|
0
|
2
|
genus
|
Peptococcus
|
0
|
1
|
genus
|
Peptoniphilus
|
5
|
6
|
genus
|
Peptostreptococcus
|
9
|
0
|
genus
|
Phascolarctobacterium
|
13
|
9
|
genus
|
Phocea
|
2
|
0
|
genus
|
Porphyromonas
|
14
|
2
|
genus
|
Prevotella
|
38
|
1
|
genus
|
Prevotellamassilia
|
4
|
0
|
genus
|
Propionibacterium
|
6
|
0
|
genus
|
Proteiniborus
|
1
|
0
|
genus
|
Proteus
|
5
|
0
|
genus
|
Providencia
|
1
|
0
|
genus
|
Pseudobutyrivibrio
|
4
|
44
|
genus
|
Pseudoflavonifractor
|
5
|
4
|
genus
|
Pseudomonas
|
10
|
0
|
genus
|
Pseudopropionibacterium
|
2
|
0
|
genus
|
Pseudoramibacter
|
1
|
0
|
genus
|
Psychrobacillus
|
1
|
0
|
genus
|
Pyramidobacter
|
4
|
0
|
genus
|
Ralstonia
|
1
|
0
|
genus
|
Raoultella
|
4
|
0
|
genus
|
Rhodococcus
|
1
|
0
|
genus
|
Rhodococcus
|
3
|
0
|
genus
|
Robinsoniella
|
1
|
1
|
genus
|
Romboutsia
|
8
|
0
|
genus
|
Roseburia
|
22
|
18
|
genus
|
Rothia
|
7
|
6
|
genus
|
Rothia
|
7
|
0
|
genus
|
Ruminiclostridium
|
7
|
0
|
genus
|
Ruminococcus
|
20
|
0
|
genus
|
Ruthenibacterium
|
4
|
0
|
genus
|
Salmonella
|
3
|
0
|
genus
|
Sarcina
|
2
|
1
|
genus
|
Scardovia
|
3
|
0
|
genus
|
Sedimentibacter
|
0
|
6
|
genus
|
Selenomonas
|
1
|
0
|
genus
|
Sellimonas
|
4
|
0
|
genus
|
Senegalimassilia
|
2
|
1
|
genus
|
Shigella
|
12
|
0
|
genus
|
Shuttleworthia
|
3
|
0
|
genus
|
Siccibacter
|
1
|
0
|
genus
|
Slackia
|
6
|
1
|
genus
|
Solobacterium
|
5
|
0
|
genus
|
Sphingobacterium
|
1
|
3
|
genus
|
Sphingomonas
|
1
|
0
|
genus
|
Sporobacter
|
1
|
1
|
genus
|
Staphylococcus
|
13
|
0
|
genus
|
Stomatobaculum
|
3
|
0
|
genus
|
Streptococcus
|
25
|
1
|
genus
|
Subdoligranulum
|
13
|
49
|
genus
|
Succinatimonas
|
4
|
0
|
genus
|
Succiniclasticum
|
2
|
0
|
genus
|
Succinivibrio Bryant and Small 1956
|
3
|
0
|
genus
|
Sutterella
|
15
|
1
|
genus
|
Syntrophomonas
|
1
|
0
|
genus
|
T1-like viruses
|
1
|
0
|
genus
|
Tannerella
|
2
|
0
|
genus
|
Terrisporobacter
|
1
|
15
|
genus
|
Thermoanaerobacter
|
1
|
0
|
genus
|
Thermus
|
1
|
0
|
genus
|
Treponema
|
1
|
0
|
genus
|
Trichococcus
|
1
|
0
|
genus
|
Turicibacter
|
12
|
0
|
genus
|
Tyzzerella
|
3
|
0
|
genus
|
Vagococcus
|
1
|
0
|
genus
|
Vampirovibrio
|
1
|
0
|
genus
|
Varibaculum
|
2
|
0
|
genus
|
Variovorax
|
2
|
0
|
genus
|
Veillonella
|
20
|
1
|
genus
|
Vibrio
|
1
|
0
|
genus
|
Weissella
|
6
|
0
|
no rank
|
Bacillales incertae sedis
|
0
|
2
|
no rank
|
Clostridium beijerinckii NRRL B-598
|
1
|
0
|
no rank
|
FCB group
|
0
|
4
|
no rank
|
Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
|
1
|
0
|
no rank
|
unclassified Clostridiales
|
0
|
2
|
order
|
Acholeplasmatales
|
1
|
0
|
order
|
Acidaminococcales
|
0
|
11
|
order
|
Actinomycetales
|
3
|
4
|
order
|
Agaricales
|
1
|
0
|
order
|
Anaerolineales
|
1
|
0
|
order
|
Anaeroplasmatales
|
1
|
0
|
order
|
Bacillales
|
0
|
4
|
order
|
Bacteroidales
|
9
|
8
|
order
|
Bifidobacteriales
|
1
|
0
|
order
|
Burkholderiales
|
0
|
12
|
order
|
Campylobacterales
|
0
|
3
|
order
|
Caulobacterales
|
1
|
0
|
order
|
Clostridiales
|
10
|
11
|
order
|
Coriobacteriales
|
0
|
12
|
order
|
Corynebacteriales
|
0
|
4
|
order
|
Cytophagales
|
1
|
0
|
order
|
Desulfobacterales
|
0
|
1
|
order
|
Desulfovibrionales
|
1
|
19
|
order
|
Eggerthellales
|
1
|
5
|
order
|
Enterobacterales
|
2
|
6
|
order
|
Erysipelotrichales
|
1
|
4
|
order
|
Fibrobacterales
|
0
|
1
|
order
|
Flavobacteriales
|
5
|
5
|
order
|
Lactobacillales
|
2
|
2
|
order
|
Mycoplasmatales
|
0
|
5
|
order
|
Opitutales
|
4
|
0
|
order
|
Pseudomonadales
|
4
|
0
|
order
|
Selenomonadales
|
3
|
17
|
order
|
Sphingobacteriales
|
0
|
3
|
order
|
Tissierellales
|
0
|
11
|
order
|
Verrucomicrobiales
|
2
|
3
|
phylum
|
Actinobacteria
|
23
|
3
|
phylum
|
ascomycetes
|
1
|
0
|
phylum
|
Bacteroidaeota
|
16
|
2
|
phylum
|
basidiomycetes
|
1
|
0
|
phylum
|
Chlamydaeota
|
1
|
0
|
phylum
|
Cyanobacteria
|
5
|
0
|
phylum
|
Deferribacteres
|
1
|
1
|
phylum
|
Euryarchaeota
|
2
|
0
|
phylum
|
Firmicutes
|
5
|
34
|
phylum
|
Firmicutes
|
27
|
8
|
phylum
|
Fusobacteraeota
|
6
|
0
|
phylum
|
Lentisphaerae
|
5
|
0
|
phylum
|
Proteobacteria
|
5
|
0
|
phylum
|
Proteobacteria
|
24
|
1
|
phylum
|
Spirochaetae
|
2
|
0
|
phylum
|
Synergistetes
|
3
|
1
|
phylum
|
Tenericutes
|
3
|
1
|
phylum
|
Thermomicrobia
|
1
|
0
|
phylum
|
Verrucomicrobia
|
11
|
4
|
species
|
[Bacteroides] coagulans
|
1
|
0
|
species
|
[Bacteroides] pectinophilus
|
3
|
0
|
species
|
[Clostridium] alkalicellulosi
|
1
|
0
|
species
|
[Clostridium] asparagiforme
|
1
|
0
|
species
|
[Clostridium] citroniae
|
2
|
0
|
species
|
[Clostridium] clostridioforme
|
4
|
0
|
species
|
[Clostridium] cocleatum
|
1
|
0
|
species
|
[Clostridium] hiranonis
|
2
|
0
|
species
|
[Clostridium] saccharolyticum
|
0
|
3
|
species
|
[Clostridium] spiroforme
|
1
|
0
|
species
|
[Clostridium] spiroforme
|
2
|
0
|
species
|
[Eubacterium] brachy
|
1
|
0
|
species
|
[Eubacterium] dolichum
|
1
|
0
|
species
|
[Eubacterium] infirmum
|
1
|
0
|
species
|
[Hallella] seregens
|
3
|
0
|
species
|
Abiotrophia adiacens
|
5
|
0
|
species
|
Abiotrophia defectiva
|
2
|
0
|
species
|
Abiotrophia sp.
|
3
|
0
|
species
|
Acetanaerobacterium elongatum
|
1
|
0
|
species
|
Acetatifactor muris
|
0
|
1
|
species
|
Acetivibrio ethanolgignens
|
1
|
0
|
species
|
Achromobacter georgiopolitanum
|
1
|
0
|
species
|
Acidaminococcus fermentans
|
2
|
0
|
species
|
Acidaminococcus intestini
|
4
|
0
|
species
|
Acidaminococcus sp.
|
3
|
0
|
species
|
Acidivorax temperans
|
2
|
0
|
species
|
Acidovorax sp. 121606
|
1
|
0
|
species
|
Acinetobacter baumannii
|
2
|
0
|
species
|
Acinetobacter calcoaceticus/baumannii complex
|
1
|
0
|
species
|
Acinetobacter genomosp. 5
|
1
|
0
|
species
|
Acinetobacter soli
|
1
|
0
|
species
|
Acinetobacter sp.
|
2
|
0
|
species
|
ACM 3611
|
4
|
0
|
species
|
Actinobacterium israeli
|
3
|
0
|
species
|
Actinobaculum massiliense
|
1
|
0
|
species
|
Actinomyces cardiffensis
|
3
|
0
|
species
|
Actinomyces dentalis
|
3
|
0
|
species
|
Actinomyces graevenitzii
|
4
|
0
|
species
|
Actinomyces hongkongensis
|
3
|
0
|
species
|
Actinomyces johnsonii
|
3
|
0
|
species
|
Actinomyces massiliensis
|
3
|
0
|
species
|
Actinomyces meyeri
|
2
|
0
|
species
|
Actinomyces naeslundii
|
4
|
0
|
species
|
Actinomyces naeslundii genospecies 2
|
3
|
0
|
species
|
Actinomyces radicidentis
|
2
|
0
|
species
|
Actinomyces sp.
|
4
|
0
|
species
|
Actinomyces timonensis
|
3
|
0
|
species
|
Actinomyces turicensis
|
1
|
0
|
species
|
Actinomyces viscosus
|
2
|
0
|
species
|
Acuformis perennis
|
1
|
0
|
species
|
Adlercreutzia equolifaciens
|
3
|
2
|
species
|
Adlercreutzia sp.
|
1
|
0
|
species
|
Aerobacter aerogenes
|
3
|
0
|
species
|
Aerococcus christensenii
|
1
|
0
|
species
|
Aeromonas shigelloides
|
3
|
0
|
species
|
Agathobaculum butyriciproducens
|
3
|
0
|
species
|
Aggregatibacter actinomycetemcomitans
|
1
|
0
|
species
|
Aggregatibacter aphrophilus
|
1
|
0
|
species
|
Aggregatibacter segnis
|
2
|
0
|
species
|
Agrobacterium pusense
|
1
|
0
|
species
|
AHU 1763
|
1
|
0
|
species
|
Akkermansia muciniphila
|
16
|
3
|
species
|
Akkermansia sp.
|
4
|
0
|
species
|
Alcaligenes sp. (strain BR60)
|
1
|
0
|
species
|
Alistipes finegoldii
|
4
|
0
|
species
|
Alistipes indistinctus
|
3
|
0
|
species
|
Alistipes obesi
|
1
|
0
|
species
|
Alistipes onderdonkii
|
5
|
0
|
species
|
Alistipes putredinis
|
4
|
0
|
species
|
Alistipes senegalensis Mishra et al. 2012
|
1
|
0
|
species
|
Alistipes shahii
|
2
|
0
|
species
|
Alistipes sp.
|
4
|
0
|
species
|
Alistipes sp. NML05A004
|
0
|
4
|
species
|
Alistipes timonensis
|
3
|
0
|
species
|
Allisonella histaminiformans
|
2
|
0
|
species
|
Allobaculum sp. Alo17
|
1
|
0
|
species
|
Alloprevotella rava
|
4
|
0
|
species
|
Alloprevotella tannerae
|
1
|
0
|
species
|
Alloscardovia omnicolens
|
2
|
0
|
species
|
Anaerobacillus macyae (Santini et al. 2004) Zavarzina et al. 2009
|
1
|
0
|
species
|
Anaerococcus obesiensis
|
1
|
0
|
species
|
Anaerococcus octavius
|
1
|
0
|
species
|
Anaerococcus prevotii
|
1
|
0
|
species
|
Anaerococcus sp.
|
2
|
0
|
species
|
Anaerococcus vaginalis
|
2
|
0
|
species
|
Anaerocolumna aminovalerica
|
1
|
0
|
species
|
Anaerofustis stercorihominis
|
1
|
0
|
species
|
Anaeroglobus geminatus
|
2
|
0
|
species
|
Anaeroglobus sp.
|
1
|
0
|
species
|
Anaeromassilibacillus senegalensis
|
1
|
0
|
species
|
Anaeromassilibacillus sp.
|
2
|
0
|
species
|
Anaerosporobacter mobilis
|
2
|
1
|
species
|
Anaerostipes caccae
|
4
|
1
|
species
|
Anaerostipes hadrus
|
5
|
0
|
species
|
Anaerostipes sp.
|
5
|
0
|
species
|
Anaerotruncus colihominis
|
2
|
1
|
species
|
Anaerotruncus sp.
|
2
|
0
|
species
|
Anaerovibrio sp.
|
1
|
0
|
species
|
Angelakisella massiliensis
|
2
|
0
|
species
|
Aquaspirillum dispar
|
1
|
0
|
species
|
ATCC 13146 [[Leuconostoc amelibiosum Schillinger et al. 1989]]
|
4
|
0
|
species
|
ATCC 15483
|
1
|
0
|
species
|
ATCC 25258
|
2
|
0
|
species
|
ATCC 27780
|
1
|
0
|
species
|
ATCC 29062
|
1
|
0
|
species
|
ATCC 29935
|
1
|
0
|
species
|
ATCC 33028
|
2
|
0
|
species
|
ATCC 33072
|
2
|
0
|
species
|
ATCC 33110
|
2
|
0
|
species
|
ATCC 33199
|
1
|
0
|
species
|
ATCC 33241
|
1
|
0
|
species
|
ATCC 33257
|
1
|
0
|
species
|
ATCC 35046
|
1
|
0
|
species
|
ATCC 35313 [[Koserella trabulsii Hickman-Brenner et al. 1985]]
|
1
|
0
|
species
|
ATCC 35469
|
3
|
0
|
species
|
ATCC 35539
|
1
|
0
|
species
|
ATCC 43838
|
1
|
0
|
species
|
ATCC 43921
|
1
|
0
|
species
|
ATCC 43994
|
2
|
0
|
species
|
ATCC 49062
|
2
|
0
|
species
|
ATCC 49124
|
4
|
0
|
species
|
ATCC 49372
|
1
|
0
|
species
|
ATCC 49427
|
2
|
0
|
species
|
ATCC 49559
|
1
|
0
|
species
|
ATCC 49918
|
3
|
0
|
species
|
ATCC 51112
|
1
|
0
|
species
|
ATCC 51114
|
2
|
0
|
species
|
ATCC 51146
|
1
|
0
|
species
|
ATCC 51230
|
1
|
0
|
species
|
ATCC 51266
|
1
|
0
|
species
|
ATCC 51502
|
2
|
0
|
species
|
ATCC 51523
|
1
|
0
|
species
|
ATCC 51767
|
3
|
0
|
species
|
ATCC 51939
|
1
|
0
|
species
|
ATCC 700018
|
1
|
0
|
species
|
ATCC 700285
|
2
|
0
|
species
|
ATCC 700332
|
2
|
0
|
species
|
ATCC 700337
|
1
|
0
|
species
|
ATCC 700632
|
2
|
0
|
species
|
ATCC 700666
|
1
|
0
|
species
|
ATCC 700779
|
3
|
0
|
species
|
ATCC 8043
|
2
|
0
|
species
|
ATCC BAA-102
|
2
|
0
|
species
|
ATCC BAA-1200
|
2
|
0
|
species
|
ATCC BAA-1383
|
1
|
0
|
species
|
ATCC BAA-303
|
3
|
0
|
species
|
ATCC BAA-960
|
3
|
0
|
species
|
Atlantibacter subterranea (Shelobolina et al. 2005) Hata et al. 2016
|
1
|
0
|
species
|
Atopobium parvulum
|
5
|
0
|
species
|
Atopobium rimae
|
4
|
0
|
species
|
Atopobium sp.
|
2
|
0
|
species
|
Aureobacterium sp.
|
2
|
0
|
species
|
Bacillus amylolyticus Choukevitch 1911
|
1
|
0
|
species
|
Bacillus coagulans
|
1
|
0
|
species
|
Bacillus fordii
|
1
|
0
|
species
|
Bacillus megaterium
|
2
|
0
|
species
|
Bacillus okuhidaensis
|
1
|
0
|
species
|
Bacillus oxytocus perniciosus Flugge 1886
|
4
|
0
|
species
|
Bacillus pseudalcalophilus Nielsen et al. 1995
|
1
|
0
|
species
|
Bacillus pumilus
|
1
|
0
|
species
|
Bacillus simplex
|
1
|
0
|
species
|
Bacillus sp.
|
2
|
0
|
species
|
Bacteridium luteum
|
1
|
0
|
species
|
Bacterium sonnei Levine 1920
|
1
|
0
|
species
|
Bacteroides barnesiae
|
3
|
0
|
species
|
Bacteroides caccae
|
1
|
1
|
species
|
Bacteroides caecimuris
|
2
|
0
|
species
|
Bacteroides cellulosilyticus
|
3
|
0
|
species
|
Bacteroides clarus
|
3
|
2
|
species
|
Bacteroides coprocola
|
3
|
4
|
species
|
Bacteroides coprophilus
|
3
|
0
|
species
|
Bacteroides dorei
|
2
|
3
|
species
|
Bacteroides eggerthii
|
3
|
1
|
species
|
Bacteroides faecichinchillae
|
2
|
0
|
species
|
Bacteroides faecis
|
3
|
2
|
species
|
Bacteroides finegoldii
|
3
|
3
|
species
|
Bacteroides fluxus
|
2
|
0
|
species
|
Bacteroides fragilis
|
19
|
2
|
species
|
Bacteroides gallinarum
|
2
|
0
|
species
|
Bacteroides gingivalis
|
2
|
0
|
species
|
Bacteroides graminisolvens
|
2
|
0
|
species
|
Bacteroides helcogenes
|
3
|
0
|
species
|
Bacteroides intestinalis
|
5
|
0
|
species
|
Bacteroides massiliensis
|
3
|
5
|
species
|
Bacteroides mediterraneensis Mailhe et al. 2016
|
1
|
0
|
species
|
Bacteroides nordii
|
3
|
2
|
species
|
Bacteroides oleiciplenus
|
1
|
0
|
species
|
Bacteroides ovatus
|
7
|
0
|
species
|
Bacteroides paurosaccharolyticus
|
1
|
0
|
species
|
Bacteroides plebeius
|
3
|
1
|
species
|
Bacteroides pyogenes
|
4
|
0
|
species
|
Bacteroides reticulotermitis
|
2
|
1
|
species
|
Bacteroides rodentium
|
3
|
0
|
species
|
Bacteroides salanitronis
|
1
|
0
|
species
|
Bacteroides salyersiae
|
3
|
9
|
species
|
Bacteroides sartorii
|
1
|
0
|
species
|
Bacteroides sp.
|
7
|
0
|
species
|
Bacteroides sp. JCM 17101
|
2
|
1
|
species
|
Bacteroides stercoris
|
6
|
2
|
species
|
Bacteroides thetaiotaomicron
|
5
|
10
|
species
|
Bacteroides uniformis
|
8
|
2
|
species
|
Bacteroides vulgatus
|
11
|
14
|
species
|
Bacteroides xylanisolvens
|
4
|
1
|
species
|
Barnesiella intestinihominis
|
2
|
10
|
species
|
Barnesiella viscericola
|
1
|
0
|
species
|
beta proteobacterium KSP3
|
1
|
0
|
species
|
Bifidobacterium adolescentis
|
5
|
0
|
species
|
Bifidobacterium animalis
|
4
|
0
|
species
|
Bifidobacterium bifidum
|
6
|
0
|
species
|
Bifidobacterium breve
|
3
|
0
|
species
|
Bifidobacterium catenulatum
|
2
|
0
|
species
|
Bifidobacterium dentium
|
3
|
0
|
species
|
Bifidobacterium longum
|
9
|
4
|
species
|
Bifidobacterium pseudocatenulatum
|
5
|
0
|
species
|
Bifidobacterium pseudolongum
|
2
|
0
|
species
|
Bifidobacterium sp.
|
5
|
0
|
species
|
Bilophila sp.
|
1
|
0
|
species
|
Bilophila wadsworthia
|
3
|
0
|
species
|
Blautia coccoides
|
2
|
0
|
species
|
Blautia faecis
|
2
|
2
|
species
|
Blautia glucerasea
|
0
|
6
|
species
|
Blautia hansenii
|
0
|
3
|
species
|
Blautia hydrogenotrophica
|
3
|
3
|
species
|
Blautia luti
|
0
|
2
|
species
|
Blautia obeum
|
4
|
2
|
species
|
Blautia producta
|
3
|
0
|
species
|
Blautia sp.
|
6
|
0
|
species
|
Blautia sp. YHC-4
|
0
|
2
|
species
|
Blautia wexlerae
|
0
|
1
|
species
|
Bradyrhizobium sp.
|
2
|
0
|
species
|
Brucella tularensis
|
6
|
0
|
species
|
Bulleidia extructa
|
1
|
0
|
species
|
Butyricicoccus pullicaecorum
|
5
|
0
|
species
|
Butyricicoccus sp.
|
4
|
0
|
species
|
Butyricimonas faecihominis
|
0
|
1
|
species
|
Butyricimonas sp.
|
4
|
0
|
species
|
Butyricimonas sp. 214-4
|
0
|
5
|
species
|
Butyricimonas synergistica
|
2
|
0
|
species
|
Butyricimonas virosa
|
4
|
0
|
species
|
Butyrivibrio crossotus
|
1
|
0
|
species
|
Butyrivibrio fibrisolvens
|
1
|
0
|
species
|
Butyrivibrio proteoclasticus
|
0
|
1
|
species
|
Butyrivibrio sp.
|
1
|
0
|
species
|
Campylobacter concisus
|
2
|
0
|
species
|
Campylobacter concisus 13826
|
1
|
0
|
species
|
Campylobacter curvus
|
2
|
0
|
species
|
Campylobacter gracilis
|
1
|
0
|
species
|
Campylobacter sp.
|
2
|
0
|
species
|
Campylobacter ureolyticus
|
1
|
0
|
species
|
Candida albicans
|
1
|
0
|
species
|
Candidatus Bacteroides periocalifornicus McLean et al. 2015
|
1
|
0
|
species
|
Candidatus Methanomethylophilus alvus Borrel et al. 2012
|
1
|
0
|
species
|
Candidatus Prevotella conceptionensis Fenollar et al. 2006
|
2
|
0
|
species
|
Capnocytophaga gingivalis
|
3
|
0
|
species
|
Capnocytophaga leadbetteri
|
2
|
0
|
species
|
Capnocytophaga sp.
|
3
|
0
|
species
|
Capnocytophaga sputigena
|
2
|
0
|
species
|
Cardiobacterium hominis
|
1
|
0
|
species
|
Cardiobacterium sp.
|
3
|
0
|
species
|
Catabacter hongkongensis
|
3
|
0
|
species
|
Catenibacterium sp.
|
1
|
0
|
species
|
Catonella morbi
|
2
|
1
|
species
|
CAV
|
1
|
0
|
species
|
CCM 3540
|
1
|
0
|
species
|
CCM 7299
|
2
|
0
|
species
|
CCUG 353
|
1
|
0
|
species
|
CCUG 41967
|
3
|
0
|
species
|
CCUG 45813
|
1
|
0
|
species
|
CCUG 45998 A
|
1
|
0
|
species
|
CCUG 46149
|
3
|
0
|
species
|
CCUG 46150
|
1
|
0
|
species
|
CCUG 47503
|
1
|
0
|
species
|
CCUG 48363
|
2
|
0
|
species
|
CCUG 48456
|
2
|
0
|
species
|
CCUG 48460
|
1
|
0
|
species
|
CCUG 54362
|
1
|
0
|
species
|
CCUG 556
|
1
|
0
|
species
|
CCUG 55896
|
1
|
0
|
species
|
CCUG 57945
|
2
|
0
|
species
|
CCUG 60371
|
2
|
0
|
species
|
CCUG 64422
|
1
|
0
|
species
|
CECT 5975
|
3
|
0
|
species
|
Cetobacterium sp.
|
1
|
0
|
species
|
Christensenella minuta
|
1
|
0
|
species
|
Christensenella sp.
|
1
|
0
|
species
|
Chryseobacterium sp.
|
2
|
0
|
species
|
CIP 106922
|
2
|
0
|
species
|
CIP 109788
|
2
|
0
|
species
|
CIP 109839
|
1
|
0
|
species
|
CIP 110771
|
2
|
0
|
species
|
Citrobacter freundii
|
3
|
0
|
species
|
Citrobacter sp.
|
2
|
0
|
species
|
Cloacibacillus evryensis
|
1
|
0
|
species
|
Cloacibacillus porcorum
|
3
|
0
|
species
|
Cloacibacterium sp.
|
1
|
0
|
species
|
Clostridiaceae bacterium JC118
|
1
|
0
|
species
|
Clostridiales bacterium 1_7_47FAA
|
2
|
0
|
species
|
Clostridiales bacterium L2-14
|
2
|
0
|
species
|
Clostridium alkalicellulosi
|
0
|
1
|
species
|
Clostridium bolteae
|
6
|
0
|
species
|
Clostridium butyricum
|
8
|
0
|
species
|
Clostridium celatum
|
1
|
0
|
species
|
Clostridium chartatabidum
|
0
|
1
|
species
|
Clostridium citroniae
|
1
|
0
|
species
|
Clostridium colinum
|
1
|
0
|
species
|
Clostridium difficile
|
4
|
0
|
species
|
Clostridium glycyrrhizinilyticum
|
2
|
0
|
species
|
Clostridium hylemonae
|
1
|
1
|
species
|
Clostridium innocuum
|
4
|
0
|
species
|
Clostridium lactatifermentans
|
0
|
1
|
species
|
Clostridium leptum
|
6
|
0
|
species
|
Clostridium methylpentosum
|
3
|
0
|
species
|
Clostridium neonatale Bouvet et al. 2014
|
1
|
0
|
species
|
Clostridium paraputrificum
|
1
|
0
|
species
|
Clostridium perfringens
|
5
|
0
|
species
|
Clostridium scindens
|
5
|
0
|
species
|
Clostridium sp.
|
7
|
0
|
species
|
Clostridium sporogenes
|
1
|
0
|
species
|
Clostridium symbiosum
|
7
|
2
|
species
|
Clostridium tertium
|
2
|
0
|
species
|
Clostridium ventriculi
|
1
|
0
|
species
|
Coccobacillus pfeifferi
|
5
|
0
|
species
|
Collinsella aerofaciens
|
2
|
3
|
species
|
Collinsella intestinalis
|
2
|
0
|
species
|
Collinsella sp.
|
5
|
0
|
species
|
Collinsella tanakaei
|
1
|
1
|
species
|
Coprobacter fastidiosus
|
2
|
1
|
species
|
Coprobacter sp.
|
3
|
0
|
species
|
Coprococcus catus
|
4
|
0
|
species
|
Coprococcus comes
|
3
|
0
|
species
|
Coprococcus eutactus
|
5
|
0
|
species
|
Coprococcus sp.
|
4
|
0
|
species
|
Corynebacterium ammoniagenes
|
1
|
0
|
species
|
Corynebacterium durum
|
1
|
0
|
species
|
Corynebacterium sp.
|
4
|
0
|
species
|
CRBIP 24.179
|
3
|
0
|
species
|
Cronobacter sakazakii
|
2
|
0
|
species
|
Cryptobacterium curtum
|
1
|
0
|
species
|
CSUR P3241
|
1
|
0
|
species
|
Cutibacterium sp.
|
2
|
0
|
species
|
Desulfomicrobium orale
|
1
|
0
|
species
|
Desulfovibrio desulfuricans
|
2
|
0
|
species
|
Desulfovibrio piger
|
2
|
9
|
species
|
Desulfovibrio sp.
|
3
|
0
|
species
|
Desulfovibrio vulgaris
|
1
|
0
|
species
|
Dialister invisus
|
4
|
0
|
species
|
Dialister pneumosintes
|
2
|
0
|
species
|
Dialister sp.
|
4
|
0
|
species
|
Dolosigranulum pigrum
|
2
|
0
|
species
|
Dorea formicigenerans
|
5
|
27
|
species
|
Dorea longicatena
|
4
|
13
|
species
|
Dorea sp.
|
5
|
0
|
species
|
DSM 102344
|
1
|
0
|
species
|
DSM 103034
|
3
|
0
|
species
|
DSM 1135
|
1
|
0
|
species
|
DSM 14437
|
2
|
0
|
species
|
DSM 17055
|
3
|
0
|
species
|
DSM 19284
|
2
|
0
|
species
|
DSM 21459
|
1
|
0
|
species
|
DSM 22759
|
2
|
0
|
species
|
DSM 22761
|
1
|
0
|
species
|
DSM 24301
|
2
|
0
|
species
|
DSM 26109
|
2
|
0
|
species
|
DSM 28989
|
2
|
0
|
species
|
DSM 39
|
2
|
0
|
species
|
DSM 4782
|
1
|
0
|
species
|
DSM 7271
|
3
|
0
|
species
|
Dysgonomonas capnocytophagoides
|
2
|
0
|
species
|
Dysgonomonas sp.
|
1
|
0
|
species
|
Effusibacillus pohliae
|
1
|
0
|
species
|
Eggerthella lenta
|
8
|
7
|
species
|
Eggerthella sp.
|
1
|
0
|
species
|
Eggerthia catenaformis
|
2
|
0
|
species
|
Eikenella corrodens
|
2
|
0
|
species
|
Eisenbergiella sp.
|
4
|
0
|
species
|
Eisenbergiella tayi
|
2
|
1
|
species
|
Emergencia sp.
|
5
|
0
|
species
|
Enorma massiliensis
|
3
|
0
|
species
|
Enorma sp.
|
1
|
0
|
species
|
Enterobacter hormaechei
|
1
|
0
|
species
|
Enterobacter oryzaendophyticus
|
2
|
0
|
species
|
Enterobacter sp.
|
2
|
0
|
species
|
Enterococcus asini
|
1
|
0
|
species
|
Enterococcus casseliflavus
|
2
|
0
|
species
|
Enterococcus cecorum
|
1
|
0
|
species
|
enterococcus durans
|
1
|
0
|
species
|
Enterococcus faecalis
|
7
|
0
|
species
|
Enterococcus faecium
|
4
|
0
|
species
|
Enterococcus gallinarum
|
5
|
0
|
species
|
Enterococcus mundtii
|
1
|
0
|
species
|
Enterococcus sp.
|
1
|
0
|
species
|
Erysipelatoclostridium ramosum
|
4
|
1
|
species
|
Escherichia albertii
|
2
|
0
|
species
|
Escherichia citrophila (Asai et al. 1957) Asai et al. 1962
|
1
|
0
|
species
|
Escherichia coli
|
19
|
0
|
species
|
Escherichia sp.
|
3
|
0
|
species
|
Eubacterium desmolans
|
1
|
0
|
species
|
Eubacterium eligens
|
5
|
0
|
species
|
Eubacterium hallii
|
8
|
0
|
species
|
Eubacterium limosum
|
3
|
0
|
species
|
Eubacterium oxidoreducens
|
1
|
0
|
species
|
Eubacterium oxidoreducens
|
3
|
1
|
species
|
Eubacterium ramulus
|
1
|
0
|
species
|
Eubacterium rectale
|
7
|
0
|
species
|
Eubacterium saphenum
|
1
|
0
|
species
|
Eubacterium siraeum
|
3
|
0
|
species
|
Eubacterium sp.
|
6
|
0
|
species
|
Eubacterium ventriosum
|
1
|
0
|
species
|
Eubacterium xylanophilum
|
1
|
0
|
species
|
Faecalibacterium prausnitzii
|
18
|
30
|
species
|
Faecalibacterium sp.
|
6
|
0
|
species
|
Faecalibacterium sp. canine oral taxon 147
|
0
|
2
|
species
|
Faecalicoccus pleomorphus
|
2
|
0
|
species
|
Faecalitalea cylindroides
|
3
|
0
|
species
|
Filifactor alocis
|
1
|
0
|
species
|
Finegoldia magna
|
1
|
1
|
species
|
Flavibacterium sp.
|
1
|
0
|
species
|
Flavonifractor plautii
|
3
|
0
|
species
|
Flavonifractor sp.
|
5
|
0
|
species
|
Fournierella sp.
|
4
|
0
|
species
|
Fusicatenibacter saccharivorans
|
1
|
0
|
species
|
Fusobacterium mortiferum
|
1
|
0
|
species
|
Fusobacterium nucleatum
|
5
|
0
|
species
|
Fusobacterium periodonticum
|
1
|
0
|
species
|
Fusobacterium sp.
|
5
|
0
|
species
|
Fusobacterium ulcerans
|
1
|
0
|
species
|
Fusobacterium varium
|
2
|
0
|
species
|
Gardnerella vaginalis
|
3
|
0
|
species
|
Gemella asaccharolytica
|
1
|
0
|
species
|
Gemella bergeri
|
1
|
0
|
species
|
Gemella morbillorum
|
4
|
0
|
species
|
Gemella sp.
|
2
|
0
|
species
|
Gemmiger formicilis
|
2
|
0
|
species
|
Gordonibacter pamelaeae
|
4
|
2
|
species
|
Gordonibacter sp.
|
1
|
0
|
species
|
Gordonibacter urolithinfaciens
|
3
|
0
|
species
|
Granulicatella elegans
|
4
|
0
|
species
|
Granulicatella sp.
|
3
|
0
|
species
|
Haemophilus haemolyticus
|
1
|
0
|
species
|
Haemophilus influenzae 10810
|
1
|
0
|
species
|
Haemophilus parahaemolyticus
|
1
|
0
|
species
|
Haemophilus parainfluenzae
|
6
|
1
|
species
|
Haemophilus paraphrohaemolyticus
|
3
|
0
|
species
|
Haemophilus pittmaniae
|
2
|
0
|
species
|
Haemophilus quentini Olsen et al. 2005
|
1
|
0
|
species
|
Haemophilus sp.
|
2
|
0
|
species
|
Haemophilus sputorum
|
1
|
0
|
species
|
Helicobacter pylori
|
1
|
0
|
species
|
Holdemanella biformis
|
2
|
0
|
species
|
Holdemanella sp.
|
4
|
0
|
species
|
Holdemania filiformis
|
2
|
0
|
species
|
Holdemania sp.
|
3
|
0
|
species
|
Howardella ureilytica
|
0
|
1
|
species
|
Hungatella hathewayi
|
5
|
0
|
species
|
HUT 6613
|
1
|
0
|
species
|
Hydrogenoanaerobacterium saccharovorans
|
0
|
1
|
species
|
IMSNU 11154
|
1
|
0
|
species
|
Intestinibacter bartlettii
|
3
|
0
|
species
|
Intestinimonas butyriciproducens
|
6
|
0
|
species
|
Intestinimonas sp.
|
2
|
0
|
species
|
JCM 1039
|
1
|
0
|
species
|
JCM 1093
|
3
|
0
|
species
|
JCM 5829
|
1
|
0
|
species
|
JCM 5830
|
1
|
0
|
species
|
JCM 8722
|
4
|
0
|
species
|
Kingella denitrificans
|
2
|
0
|
species
|
Kingella oralis
|
2
|
0
|
species
|
Klebsiella ornithinolytica
|
2
|
0
|
species
|
Klebsiella pneumoniae aerogenes
|
7
|
0
|
species
|
Klebsiella sp.
|
1
|
0
|
species
|
Kluyvera ascorbata
|
2
|
0
|
species
|
Kluyvera georgiana
|
2
|
0
|
species
|
Kocuria kristinae
|
1
|
0
|
species
|
Kytococcus sedentarius
|
4
|
0
|
species
|
Lachnoanaerobaculum saburreum
|
3
|
0
|
species
|
Lachnoanaerobaculum sp.
|
3
|
0
|
species
|
Lachnoanaerobaculum umeaense
|
4
|
0
|
species
|
Lachnoclostridium sp.
|
1
|
0
|
species
|
Lachnospira pectinoschiza
|
2
|
1
|
species
|
Lachnospira sp.
|
5
|
0
|
species
|
Lachnospiraceae bacterium oral taxon 082
|
1
|
0
|
species
|
Lactobacillus acidophilus
|
4
|
0
|
species
|
Lactobacillus agilis
|
2
|
0
|
species
|
Lactobacillus amylolyticus
|
1
|
0
|
species
|
lactobacillus brevis
|
1
|
0
|
species
|
Lactobacillus crispatus
|
3
|
1
|
species
|
Lactobacillus curvatus
|
3
|
0
|
species
|
Lactobacillus delbrueckii
|
2
|
0
|
species
|
Lactobacillus equi
|
2
|
0
|
species
|
Lactobacillus fermentum
|
7
|
0
|
species
|
Lactobacillus gasseri
|
5
|
0
|
species
|
Lactobacillus ingluviei
|
1
|
0
|
species
|
Lactobacillus intestinalis
|
1
|
0
|
species
|
Lactobacillus johnsonii
|
2
|
0
|
species
|
Lactobacillus kalixensis
|
1
|
0
|
species
|
Lactobacillus mucosae
|
4
|
0
|
species
|
Lactobacillus murinus
|
1
|
0
|
species
|
Lactobacillus paracasei
|
3
|
0
|
species
|
Lactobacillus plantarum
|
4
|
0
|
species
|
Lactobacillus reuteri
|
6
|
0
|
species
|
Lactobacillus rhamnosus
|
2
|
0
|
species
|
Lactobacillus rogosae
|
1
|
0
|
species
|
Lactobacillus saerimneri
|
1
|
0
|
species
|
Lactobacillus sakei
|
3
|
0
|
species
|
Lactobacillus salivarius
|
6
|
0
|
species
|
Lactobacillus sp.
|
3
|
0
|
species
|
Lactobacillus vaginalis
|
3
|
0
|
species
|
Lactococcus lactis
|
3
|
0
|
species
|
Lactococcus sp.
|
2
|
0
|
species
|
Lactonifactor longoviformis
|
3
|
1
|
species
|
Lautropia mirabilis
|
2
|
0
|
species
|
Leadbetterella byssophila
|
3
|
0
|
species
|
Leclercia adecarboxylata
|
1
|
0
|
species
|
Leclercia sp.
|
1
|
0
|
species
|
Leminorella grimontii
|
1
|
0
|
species
|
Leptotrichia hofstadii
|
1
|
0
|
species
|
Leptotrichia sp.
|
5
|
0
|
species
|
Leptotrichia trevisanii
|
3
|
0
|
species
|
Leptotrichia wadei
|
1
|
0
|
species
|
Leucobacter sp.
|
1
|
0
|
species
|
Leuconostoc lactis
|
2
|
0
|
species
|
Leuconostoc mesenteroides
|
1
|
0
|
species
|
LMG:18984
|
2
|
0
|
species
|
LMG:2665
|
1
|
0
|
species
|
LMG:5313
|
2
|
0
|
species
|
LMG:7884
|
1
|
0
|
species
|
LMG:9496
|
3
|
0
|
species
|
Marvinbryantia sp.
|
2
|
0
|
species
|
Massilimicrobiota timonensis Tall et al.
|
1
|
0
|
species
|
Massilioclostridium sp.
|
2
|
0
|
species
|
Megamonas hypermegale
|
2
|
0
|
species
|
Megamonas sp.
|
1
|
0
|
species
|
Megasphaera elsdenii
|
1
|
0
|
species
|
Megasphaera micronuciformis
|
4
|
0
|
species
|
Megasphaera sp.
|
4
|
0
|
species
|
Meiothermus silvanus
|
1
|
0
|
species
|
Merdibacter massiliensis
|
1
|
0
|
species
|
Methanobrevibacter smithii
|
7
|
0
|
species
|
Methanobrevibacter sp.
|
2
|
0
|
species
|
Methanomassiliicoccus luminyensis
|
1
|
0
|
species
|
Methanosphaera cuniculi
|
2
|
0
|
species
|
Methanosphaera stadtmanae
|
1
|
0
|
species
|
Micromonas sp. (in: Bacteria)
|
3
|
0
|
species
|
Mitsuokella jalaludinii
|
1
|
0
|
species
|
Mitsuokella sp.
|
2
|
0
|
species
|
Mogibacterium sp.
|
4
|
0
|
species
|
Moraxella osloensis
|
2
|
0
|
species
|
Morganella morganii
|
2
|
0
|
species
|
Murimonas intestini
|
1
|
0
|
species
|
Mycoplasma fermentans
|
1
|
0
|
species
|
Mycoplasma hominis
|
2
|
0
|
species
|
Negativicoccus massiliensis Togo et al. 2016
|
2
|
0
|
species
|
Negativicoccus succinicivorans
|
2
|
0
|
species
|
Neglecta sp.
|
3
|
0
|
species
|
Neisseria cinerea
|
2
|
0
|
species
|
Neisseria flavescens
|
3
|
0
|
species
|
Neisseria meningitidis
|
3
|
0
|
species
|
Neisseria sicca
|
2
|
0
|
species
|
Neisseria sp.
|
2
|
0
|
species
|
Nocardioides dubius
|
4
|
0
|
species
|
Odoribacter laneus
|
2
|
1
|
species
|
Odoribacter sp.
|
4
|
0
|
species
|
Odoribacter splanchnicus
|
5
|
3
|
species
|
Olsenella profusa
|
3
|
0
|
species
|
Olsenella sp.
|
4
|
0
|
species
|
Olsenella uli
|
3
|
0
|
species
|
Oribacterium sinus
|
2
|
0
|
species
|
Oribacterium sp.
|
4
|
0
|
species
|
Oscillibacter ruminantium
|
1
|
0
|
species
|
Oscillibacter sp.
|
5
|
0
|
species
|
Oscillibacter valericigenes
|
1
|
3
|
species
|
Oscillospira guilliermondii
|
0
|
1
|
species
|
Ottowia sp.
|
2
|
0
|
species
|
Oxalobacter formigenes
|
3
|
0
|
species
|
Oxalobacter sp.
|
2
|
0
|
species
|
Paenibacillus sp.
|
1
|
0
|
species
|
Paeniclostridium sordellii
|
1
|
0
|
species
|
Papillibacter cinnamivorans
|
0
|
1
|
species
|
Parabacteroides chinchillae
|
1
|
0
|
species
|
Parabacteroides distasonis
|
9
|
1
|
species
|
Parabacteroides faecis
|
0
|
1
|
species
|
Parabacteroides goldsteinii
|
2
|
6
|
species
|
Parabacteroides gordonii
|
2
|
0
|
species
|
Parabacteroides johnsonii
|
3
|
26
|
species
|
Parabacteroides merdae
|
5
|
12
|
species
|
Parabacteroides sp.
|
4
|
0
|
species
|
Paraburkholderia sp.
|
1
|
0
|
species
|
Paraclostridium bifermentans
|
2
|
0
|
species
|
Paraprevotella clara
|
2
|
6
|
species
|
Paraprevotella sp.
|
4
|
0
|
species
|
Paraprevotella xylaniphila
|
1
|
0
|
species
|
Parascardovia denticolens
|
2
|
0
|
species
|
Parasutterella excrementihominis
|
1
|
0
|
species
|
Parasutterella sp.
|
3
|
0
|
species
|
Parvimonas micra
|
2
|
0
|
species
|
PCU:282
|
1
|
0
|
species
|
Pediococcus acidilactici
|
3
|
0
|
species
|
Pediococcus pentosaceus
|
2
|
0
|
species
|
Peptococcus niger
|
1
|
0
|
species
|
Peptoniphilus lacrimalis
|
0
|
1
|
species
|
Peptoniphilus rhinitidis Kim et al. 2012
|
1
|
0
|
species
|
Peptoniphilus sp.
|
5
|
0
|
species
|
Peptostreptococcus anaerobius
|
3
|
0
|
species
|
Peptostreptococcus sp.
|
4
|
0
|
species
|
Peptostreptococcus stomatis
|
3
|
0
|
species
|
Phascolarctobacterium faecium
|
5
|
0
|
species
|
Phascolarctobacterium faecium
|
0
|
1
|
species
|
Phascolarctobacterium sp.
|
4
|
0
|
species
|
Phascolarctobacterium succinatutens
|
0
|
7
|
species
|
Phocaeicola abscessus
|
1
|
0
|
species
|
Photobacterium damselae
|
1
|
0
|
species
|
Porphyromonas asaccharolytica
|
1
|
0
|
species
|
Porphyromonas bennonis
|
2
|
0
|
species
|
Porphyromonas cangingivalis
|
1
|
0
|
species
|
Porphyromonas catoniae
|
4
|
0
|
species
|
Porphyromonas endodontalis
|
3
|
0
|
species
|
Porphyromonas somerae
|
4
|
0
|
species
|
Porphyromonas sp.
|
4
|
0
|
species
|
Porphyromonas uenonis
|
2
|
0
|
species
|
Prevotella albensis
|
1
|
0
|
species
|
Prevotella amnii
|
2
|
0
|
species
|
Prevotella aurantiaca
|
2
|
0
|
species
|
Prevotella baroniae
|
2
|
0
|
species
|
Prevotella bergensis
|
1
|
0
|
species
|
Prevotella bivia
|
3
|
0
|
species
|
Prevotella buccae
|
2
|
0
|
species
|
Prevotella buccalis
|
2
|
0
|
species
|
Prevotella colorans
|
1
|
0
|
species
|
Prevotella copri
|
10
|
0
|
species
|
Prevotella corporis
|
2
|
0
|
species
|
Prevotella denticola
|
3
|
0
|
species
|
Prevotella disiens
|
0
|
1
|
species
|
Prevotella histicola
|
5
|
0
|
species
|
Prevotella intermedia
|
2
|
0
|
species
|
Prevotella loescheii
|
2
|
0
|
species
|
Prevotella maculosa
|
3
|
0
|
species
|
Prevotella marshii
|
2
|
0
|
species
|
Prevotella melaninogenica
|
2
|
0
|
species
|
Prevotella micans
|
4
|
0
|
species
|
Prevotella multiformis
|
1
|
0
|
species
|
Prevotella multisaccharivorax
|
2
|
0
|
species
|
Prevotella nanceiensis
|
2
|
0
|
species
|
Prevotella nigrescens
|
3
|
0
|
species
|
Prevotella oralis
|
5
|
0
|
species
|
Prevotella oris
|
2
|
0
|
species
|
Prevotella oulorum
|
2
|
0
|
species
|
Prevotella pallens
|
2
|
0
|
species
|
Prevotella paludivivens
|
1
|
0
|
species
|
Prevotella pleuritidis
|
2
|
0
|
species
|
Prevotella saccharolytica
|
3
|
0
|
species
|
Prevotella salivae
|
3
|
0
|
species
|
Prevotella shahii
|
2
|
0
|
species
|
Prevotella sp.
|
5
|
0
|
species
|
Prevotella stercorea
|
2
|
0
|
species
|
Prevotella timonensis
|
1
|
0
|
species
|
Prevotella veroralis
|
2
|
0
|
species
|
Propionibacterium sp.
|
2
|
0
|
species
|
Proteus mirabilis
|
2
|
0
|
species
|
Proteus vulgaris
|
3
|
0
|
species
|
Pseudoflavonifractor capillosus
|
6
|
1
|
species
|
Pseudoflavonifractor sp.
|
2
|
0
|
species
|
Pseudomonas aeruginosa
|
4
|
0
|
species
|
Pseudomonas aeruginosa group
|
2
|
0
|
species
|
Pseudomonas putida
|
1
|
0
|
species
|
Pseudopedobacter saltans
|
1
|
0
|
species
|
Pseudopropionibacterium sp.
|
2
|
0
|
species
|
Pseudoramibacter alactolyticus
|
3
|
0
|
species
|
Pseudoramibacter sp.
|
1
|
0
|
species
|
Psychrobacillus sp.
|
1
|
0
|
species
|
Pyramidobacter piscolens
|
2
|
0
|
species
|
Pyramidobacter sp.
|
1
|
0
|
species
|
Raoultella sp.
|
3
|
0
|
species
|
Rikenella microfusus
|
3
|
0
|
species
|
Robinsoniella peoriensis
|
1
|
0
|
species
|
Robinsoniella sp.
|
1
|
0
|
species
|
Romboutsia ilealis
|
1
|
0
|
species
|
Romboutsia sp.
|
4
|
0
|
species
|
Roseburia faecis
|
3
|
29
|
species
|
Roseburia hominis
|
3
|
0
|
species
|
Roseburia intestinalis
|
3
|
1
|
species
|
Roseburia inulinivorans
|
7
|
7
|
species
|
Roseburia sp.
|
5
|
0
|
species
|
Rothia aeria
|
4
|
0
|
species
|
Rothia dentocariosa
|
5
|
0
|
species
|
Rothia mucilaginosa
|
3
|
0
|
species
|
Rothia sp.
|
3
|
0
|
species
|
Ruminiclostridium sp.
|
5
|
0
|
species
|
Ruminococcaceae bacterium D16
|
3
|
0
|
species
|
Ruminococcus albus
|
1
|
0
|
species
|
Ruminococcus bicirculans
|
1
|
0
|
species
|
Ruminococcus bromii
|
2
|
0
|
species
|
Ruminococcus callidus
|
2
|
0
|
species
|
Ruminococcus champanellensis
|
1
|
0
|
species
|
Ruminococcus flavefaciens
|
1
|
0
|
species
|
Ruminococcus gauvreauii
|
3
|
0
|
species
|
Ruminococcus gnavus
|
14
|
0
|
species
|
Ruminococcus lactaris
|
1
|
0
|
species
|
Ruminococcus sp.
|
7
|
0
|
species
|
Ruminococcus torques
|
8
|
0
|
species
|
Salmonella enterica
|
2
|
0
|
species
|
Sanguibacteroides justesenii Sydenham et al. 2015
|
3
|
0
|
species
|
Scardovia inopinata
|
3
|
0
|
species
|
Scardovia wiggsiae
|
3
|
0
|
species
|
Selenomonas artemidis
|
3
|
0
|
species
|
Selenomonas flueggei
|
1
|
0
|
species
|
Selenomonas noxia
|
2
|
0
|
species
|
Selenomonas sputigena
|
3
|
0
|
species
|
Shuttleworthia satelles
|
3
|
0
|
species
|
Siccibacter sp.
|
1
|
0
|
species
|
Slackia exigua
|
3
|
0
|
species
|
Slackia piriformis
|
1
|
4
|
species
|
Slackia sp.
|
1
|
0
|
species
|
Sneathia sanguinegens
|
1
|
0
|
species
|
Solobacterium moorei
|
2
|
0
|
species
|
Sphingobacterium sp.
|
1
|
0
|
species
|
Staphylococcus aureus
|
5
|
0
|
species
|
Staphylococcus capitis
|
2
|
0
|
species
|
Staphylococcus epidermidis
|
2
|
0
|
species
|
Staphylococcus pasteuri
|
2
|
0
|
species
|
Staphylococcus xylosus
|
3
|
0
|
species
|
Stenotrophomonas maltophilia
|
1
|
0
|
species
|
Stenotrophomonas maltophilia complex
|
1
|
0
|
species
|
Stomatobaculum longum
|
3
|
0
|
species
|
Streptococcus agalactiae
|
1
|
0
|
species
|
Streptococcus anginosus
|
3
|
0
|
species
|
Streptococcus australis
|
2
|
0
|
species
|
Streptococcus bovis
|
2
|
0
|
species
|
Streptococcus constellatus
|
2
|
0
|
species
|
Streptococcus cristatus
|
3
|
0
|
species
|
Streptococcus dysgalactiae
|
1
|
0
|
species
|
Streptococcus G418
|
6
|
0
|
species
|
Streptococcus gordonii
|
3
|
0
|
species
|
Streptococcus intermedius
|
2
|
0
|
species
|
Streptococcus massiliensis
|
2
|
0
|
species
|
Streptococcus mitis
|
6
|
0
|
species
|
Streptococcus mutans
|
2
|
0
|
species
|
Streptococcus oralis
|
3
|
0
|
species
|
Streptococcus oralis
|
3
|
0
|
species
|
Streptococcus orisratti
|
1
|
0
|
species
|
Streptococcus parauberis
|
1
|
0
|
species
|
Streptococcus peroris
|
2
|
0
|
species
|
Streptococcus pneumoniae
|
3
|
0
|
species
|
Streptococcus pyogenes
|
1
|
0
|
species
|
Streptococcus salivarius
|
3
|
0
|
species
|
Streptococcus sanguinis
|
4
|
0
|
species
|
Streptococcus sobrinus
|
2
|
0
|
species
|
Streptococcus thermophilus
|
5
|
0
|
species
|
Streptomyces cattleya
|
2
|
0
|
species
|
Subdoligranulum sp.
|
4
|
0
|
species
|
Subdoligranulum variabile
|
2
|
6
|
species
|
Succinatimonas hippei
|
1
|
0
|
species
|
Succinivibrio sp.
|
4
|
0
|
species
|
Sutterella sp.
|
6
|
0
|
species
|
Sutterella stercoricanis
|
0
|
1
|
species
|
Sutterella wadsworthensis
|
5
|
1
|
species
|
Synergistes jonesii
|
1
|
0
|
species
|
Syntrophomonas sp.
|
1
|
0
|
species
|
Tannerella forsythia
|
2
|
0
|
species
|
Tannerella sp.
|
2
|
0
|
species
|
Terrisporobacter sp.
|
2
|
0
|
species
|
Torulopsis
|
1
|
0
|
species
|
Treponema socranskii
|
1
|
0
|
species
|
Trichococcus sp.
|
1
|
0
|
species
|
Trueperella pyogenes
|
2
|
0
|
species
|
Turicibacter sanguinis
|
1
|
0
|
species
|
Tyzzerella nexilis
|
4
|
0
|
species
|
Tyzzerella sp.
|
4
|
0
|
species
|
Varibaculum sp.
|
2
|
0
|
species
|
Variovorax sp.
|
2
|
0
|
species
|
Veillonella atypica
|
3
|
0
|
species
|
Veillonella dispar
|
3
|
0
|
species
|
Veillonella montpellierensis
|
1
|
0
|
species
|
Veillonella parvula
|
3
|
0
|
species
|
Veillonella rogosae
|
5
|
0
|
species
|
Veillonella sp.
|
5
|
0
|
species
|
Veillonella tobetsuensis
|
3
|
0
|
species
|
Vibrio jejuni
|
1
|
0
|
species
|
Victivallis vadensis
|
2
|
0
|
species
|
VPI 1550
|
1
|
0
|
species
|
Weissella paramesenteroides
|
1
|
0
|
species
|
Wolinella recta
|
4
|
0
|
species
|
Yersinia ruckeri
|
1
|
0
|
strain
|
Anaerobutyricum hallii ATCC 27751
|
1
|
0
|
strain
|
Clostridium beijerinckii NCIMB 8052
|
1
|
0
|
strain
|
Klebsiella pneumoniae 1162281
|
1
|
0
|
strain
|
Saccharomyces cerevisiae
|
1
|
0
|
strain
|
Streptococcus oralis subsp. tigurinus
|
2
|
0
|
suborder
|
Coriobacterineae
|
1
|
0
|
subspecies
|
Bifidobacterium animalis subsp. lactis
|
1
|
0
|
subspecies
|
Bifidobacterium infantis
|
1
|
0
|
superphylum
|
Bacteroidetes/Chlorobi group
|
0
|
7
|