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Bacteria Associated with Symptoms (Citizen Science)

The tables below were determined from results detected by Symptom Explorer and then recorded to the database. Second are Conditions, which are the bacteria counts reported as abnormal by published studies. If a strain was detected as significant, then we included its parents(genus,family,order,class, phylum) in the count.

These bacteria are shifted in some manner (may be high, low, or just shifted). The purpose is to attempt to identify what bacteria that seems most associated with poor health. The number is the number of times it was reported in studies or in Explorer. It is not a count of the bacteria.

Association of Taxa with Symptoms or Conditions

Tax_rank tax_name Symptom References Condition References
class Acidobacteria   1   0
class Acidobacteriia   8   4
class Alphaproteobacteria   1   0
class Anaerolineae   1   0
class Bacilli   4   3
class Bacteroidetes   6   9
class Betaproteobacteria   1   1
class Chloroflexia   2   0
class Clostridia   15   12
class Coriobacteriia   3   21
class Deinococci   0   1
class Deltaproteobacteria   2   22
class Dothideomycetes   1   0
class Epsilonproteobacteria   0   1
class Erysipelotrichia   1   5
class Fibrobacteria   0   1
class Flavobacteriia   0   3
class Fusobacteriia   2   0
class Gammaproteobacteria   3   2
class Kiritimatiellae   2   0
class Lentisphaeria   0   1
class Mollicutes   1   0
class Negativicutes   1   6
class Sphingobacteriia   0   47
class Spirochaetia   1   0
class Tissierellia   0   3
class Verrucomicrobiae   1   5
family Acidaminococcaceae   7   11
family Actinomycetaceae   1   4
family Aerococcaceae   1   0
family Akkermansiaceae   1   1
family Alcaligenaceae   0   1
family Anaerolineaceae   1   0
family Atopobiaceae   2   0
family Bacillaceae   0   2
family Bacteroidaceae   11   3
family Barnesiellaceae   3   0
family Bifidobacteriaceae   4   1
family Burkholderiaceae   1   43
family Campylobacteraceae   1   1
family Candidatus Homeothermaceae   5   0
family Carnobacteriaceae   2   1
family Catabacteriaceae   2   0
family Chitinophagaceae   1   1
family Christensenellaceae   8   0
family Clostridiaceae   10   2
family Clostridiales Family IV. Incertae Sedis   1   0
family Clostridiales Family XI. Incertae Sedis   1   0
family Clostridiales Family XIII. Incertae Sedis   0   7
family Clostridiales incertae sedis   0   5
family Comamonadaceae   2   0
family Coriobacteriaceae   4   7
family Corynebacteriaceae   1   5
family Dermabacteraceae   1   0
family Desulfobulbaceae   2   0
family Desulfovibrionaceae   5   15
family Eggerthellaceae   5   5
family Elusimicrobiaceae   2   0
family Enterobacteriaceae   19   12
family Enterococcaceae   1   0
family Erysipelotrichaceae   13   0
family Eubacteriaceae   3   22
family Fibrobacteraceae   0   1
family Flavobacteriaceae   0   2
family Fusobacteriaceae   1   2
family Hyphomonadaceae   0   2
family Lachnospiraceae   30   5
family Lactobacillaceae   3   2
family Methylobacteriaceae   1   0
family Micrococcaceae   0   2
family Mycoplasmataceae   0   10
family Neisseriaceae   1   0
family Nocardiaceae   2   0
family Odoribacteraceae   1   6
family Oscillospiraceae   10   21
family Oxalobacteraceae   0   1
family Paludibacteraceae   4   0
family Pasteurellaceae   3   0
family Peptococcaceae   5   1
family Peptoniphilaceae   0   7
family Peptostreptococcaceae   3   15
family Planococcaceae   0   2
family Porphyromonadaceae   7   10
family Prevotellaceae   10   1
family Propionibacteriaceae   0   2
family Pseudomonadaceae   2   0
family Rhodospirillaceae   0   2
family Rikenellaceae   11   0
family Ruminococcaceae   29   40
family Sphingobacteriaceae   0   31
family Sphingomonadaceae   1   0
family Staphylococcaceae   1   0
family Streptococcaceae   3   1
family Streptomycetaceae   1   0
family Sutterellaceae   4   7
family Tannerellaceae Ormerod et al. 2016   1   1
family Tissierellaceae   2   0
family Veillonellaceae   7   1
family Verrucomicrobiaceae   1   23
family Victivallaceae   0   1
genus Abiotrophia   5   0
genus Acetitomaculum   0   1
genus Acetivibrio   1   1
genus Acetobacter   1   0
genus Acetobacteroides   1   0
genus Acidaminococcus   7   10
genus Acidipropionibacterium   1   0
genus Acinetobacter   2   0
genus Actinobacillus   3   0
genus Actinomyces   8   0
genus Actinopolyspora   1   0
genus Adlercreutzia   9   0
genus Aeriscardovia   1   0
genus Aerococcus   1   0
genus Aeromonas   1   0
genus Aestuariispira   1   0
genus Agathobacter   5   0
genus Aggregatibacter   3   0
genus Akkermansia   18   3
genus Alistipes   23   1
genus Allobaculum   2   0
genus Alloprevotella   2   0
genus Alloscardovia   2   0
genus Anaerococcus   4   1
genus Anaerofilum   1   0
genus Anaerofustis   1   1
genus Anaeroglobus   2   0
genus Anaeromassilibacillus   2   0
genus Anaeroplasma   2   0
genus Anaerostipes   10   1
genus Anaerotruncus   9   21
genus Angelakisella   3   0
genus Asaccharobacter   1   0
genus Atopobium   6   0
genus Atopostipes   1   0
genus Bacillus   4   0
genus Bacillus   3   0
genus Bacteroides   35   4
genus Barnesiella   6   10
genus Bifidobacterium   32   1
genus Bilophila   13   0
genus Bittarella   1   0
genus Blautia   21   29
genus Bradyrhizobium   2   0
genus Brevibacterium   1   0
genus Bulleidia   1   0
genus Burkholderia   4   0
genus Butyricicoccus   11   0
genus Butyricimonas   7   12
genus Butyrivibrio   8   1
genus Caloramator   1   0
genus Campylobacter   8   1
genus Candida   1   0
genus Candidatus Homeothermus   4   0
genus Candidatus Soleaferrea   1   0
genus Candidatus Stoquefichus   3   0
genus Capnocytophaga   3   0
genus Cardiobacterium   3   0
genus Carnobacterium   1   0
genus Catenibacterium   7   0
genus Catonella   0   1
genus Cellulosibacter   1   0
genus Cellulosilyticum   1   0
genus Centipeda   3   0
genus Centipeda   3   0
genus Cetobacterium   3   0
genus Christensenella   3   0
genus Chryseobacterium   2   0
genus Cloacibacterium   1   0
genus Clostridioides   0   1
genus Clostridium   26   3
genus Collinsella   15   9
genus Coprobacillus   11   0
genus Coprobacter   2   0
genus Coprococcus   19   0
genus Coriobacterium   1   0
genus Corynebacterium   8   4
genus Criibacterium   2   0
genus Cronobacter   1   0
genus Cryptobacterium   2   0
genus Cutibacterium   2   0
genus Dehalobacterium   3   0
genus Deinococcus   1   0
genus Desulfovibrio   19   0
genus Dialister   14   1
genus Dielma   1   0
genus Dorea   18   3
genus Dysgonomonas   1   0
genus Edwardsiella   1   0
genus Eggerthella   11   9
genus Eggerthia   1   0
genus Eikenella   1   0
genus Eisenbergiella   1   3
genus Emergencia   4   0
genus Enhydrobacter   1   0
genus Enterobacter   11   0
genus Enterococcus   20   1
genus Erwinia   1   0
genus Erysipelatoclostridium   9   35
genus Escherichia   14   0
genus Eubacterium   18   23
genus Facklamia   1   1
genus Faecalibacterium   31   44
genus Faecalibaculum   1   0
genus Faecalicoccus   1   0
genus Faecalitalea   2   0
genus Fibrobacter   0   1
genus Finegoldia   1   1
genus Flavobacterium   3   0
genus Flavonifractor   9   8
genus Fournierella   4   0
genus Fretibacterium   2   0
genus Fusicatenibacter   1   2
genus Fusobacterium   13   0
genus Gardnerella   1   0
genus Gelria   1   0
genus Gemella   8   1
genus Geosporobacter   1   0
genus Gonococcus   6   0
genus Gordonibacter   6   1
genus Granulicatella   5   0
genus Haemophilus   16   1
genus Hafnia   1   0
genus Helicobacter   1   0
genus Hespellia   0   7
genus Holdemanella   3   0
genus Holdemania   5   1
genus Howardella   0   1
genus Hyphomicrobium   1   0
genus Intestinibacter   3   7
genus Intestinimonas   4   0
genus Johnsonella   3   0
genus Jonquetella   1   0
genus Klebsiella Trevisan 1885 (Approved Lists 1980) emend. Carter et al. 1999   16   0
genus Kluyvera   0   1
genus Lachnoanaerobaculum   3   0
genus Lachnobacterium   1   0
genus Lachnoclostridium   3   0
genus Lachnospira   11   4
genus Lactobacillus   26   0
genus Lactococcus   4   0
genus Lautropia   1   0
genus Lawsonella   1   0
genus Leclercia   1   0
genus Leptotrichia   6   0
genus Leucobacter   1   0
genus Leuconostoc   3   0
genus Levinea Young et al. 1971   5   0
genus Levyella   1   0
genus Libanicoccus   2   0
genus Marvinbryantia   2   9
genus Massilioclostridium   2   0
genus Megamonas   10   0
genus Megasphaera   9   14
genus Merdibacter   4   0
genus Methanobrevibacter   12   0
genus Methanosphaera   3   0
genus Methylobacterium   1   0
genus Microbacterium   2   0
genus Mitsuokella   4   0
genus Mogibacterium   5   3
genus Moraxella   1   0
genus Morganella   2   0
genus Morganella   1   0
genus Morganella   1   0
genus Moryella   0   16
genus Murdochiella   1   0
genus Murimonas   1   0
genus Mycobacterium   2   0
genus Mycoplasma   1   2
genus Negativicoccus   0   1
genus Neglecta   3   0
genus Nissabacter   1   0
genus Novispirillum   1   0
genus Odoribacter   13   3
genus Olsenella   7   0
genus Oribacterium   6   0
genus Oscillibacter   14   1
genus Oscillospira   5   1
genus Ottowia   2   0
genus Oxalobacter   5   0
genus Pachytichospora   1   0
genus Paenibacillus   4   1
genus Pantoea   4   0
genus Papillibacter   0   1
genus Parabacteroides   23   0
genus Paraburkholderia   1   0
genus Paraprevotella   8   3
genus Parascardovia   1   0
genus Parasutterella   7   0
genus Parvimonas   10   0
genus Pediococcus   1   0
genus Pedobacter   1   1
genus Peptoclostridium   0   3
genus Peptococcus   0   6
genus Peptoniphilus   5   4
genus Peptostreptococcus   9   0
genus Phascolarctobacterium   12   11
genus Phocea   2   0
genus Porphyromonas   13   2
genus Prevotella   35   5
genus Prevotellamassilia   4   0
genus Propionibacterium   6   0
genus Proteiniborus   1   0
genus Proteus   5   0
genus Providencia   1   0
genus Pseudobutyrivibrio   4   39
genus Pseudoflavonifractor   5   6
genus Pseudomonas   10   0
genus Pseudopropionibacterium   2   0
genus Pseudoramibacter   1   0
genus Psychrobacillus   1   0
genus Pyramidobacter   3   0
genus Ralstonia   1   0
genus Raoultella   4   0
genus Rhodococcus   3   0
genus Rhodococcus   1   0
genus Robinsoniella   1   1
genus Romboutsia   8   0
genus Roseburia   17   21
genus Rothia   6   6
genus Rothia   6   0
genus Ruminiclostridium   7   0
genus Ruminococcus   15   0
genus Ruthenibacterium   4   0
genus Salmonella   2   0
genus Sarcina   1   2
genus Scardovia   3   0
genus Selenomonas   1   0
genus Sellimonas   4   0
genus Senegalimassilia   2   2
genus Shigella   10   0
genus Shuttleworthia   3   0
genus Siccibacter   1   0
genus Slackia   6   3
genus Solobacterium   5   0
genus Sphingobacterium   1   4
genus Sphingomonas   1   0
genus Sporobacter   1   0
genus Staphylococcus   13   0
genus Stomatobaculum   3   0
genus Streptococcus   24   1
genus Subdoligranulum   12   49
genus Succinatimonas   4   0
genus Succiniclasticum   1   0
genus Succinivibrio   3   0
genus Sutterella   13   1
genus Syntrophomonas   1   0
genus Tannerella   2   0
genus Terrisporobacter   1   24
genus Thermoanaerobacter   1   0
genus Thermus   1   0
genus Treponema   1   0
genus Trichococcus   1   0
genus Turicibacter   12   0
genus Tyzzerella   3   0
genus Vagococcus   1   0
genus Vampirovibrio   1   0
genus Varibaculum   2   1
genus Variovorax   2   0
genus Veillonella   16   1
genus Vibrio   1   0
genus Victivallis   0   1
genus Weissella   6   1
no rank Campylobacter concisus 13826   1   0
no rank Clostridium beijerinckii NRRL B-598   1   0
no rank FCB group   0   5
no rank Haemophilus influenzae 10810   1   0
no rank unclassified Clostridiales   0   2
order Acholeplasmatales   1   0
order Acidaminococcales   0   13
order Actinomycetales   3   5
order Agaricales   1   0
order Anaerolineales   1   0
order Anaeroplasmatales   1   0
order Bacillales   0   6
order Bacteroidales   9   10
order Bifidobacteriales   1   1
order Burkholderiales   0   2
order Campylobacterales   0   1
order Caulobacterales   1   0
order Clostridiales   10   12
order Coriobacteriales   0   7
order Corynebacteriales   0   5
order Cytophagales   1   0
order Desulfobacterales   0   1
order Desulfovibrionales   1   17
order Eggerthellales   0   8
order Enterobacterales   2   5
order Erysipelotrichales   1   5
order Fibrobacterales   0   1
order Flavobacteriales   5   3
order Lactobacillales   2   2
order Mycoplasmatales   0   6
order Opitutales   4   0
order Pseudomonadales   4   0
order Rhodocyclales   0   1
order Rhodospirillales   0   1
order Selenomonadales   3   17
order Sphingobacteriales   0   42
order Tissierellales   0   8
order Verrucomicrobiales   2   4
order Victivallales   0   1
phylum Actinobacteria   17   1
phylum ascomycetes   1   0
phylum Bacteroidaeota   14   7
phylum basidiomycetes   1   0
phylum Chloroflexi   1   0
phylum Cyanobacteria   4   0
phylum Euryarchaeota   1   0
phylum Firmicutes   4   40
phylum Firmicutes   24   11
phylum Fusobacteraeota   6   0
phylum Lentisphaerae   4   0
phylum Proteobacteria   22   1
phylum Proteobacteria   4   0
phylum Spirochaetae   2   0
phylum Synergistetes   3   0
phylum Tenericutes   2   0
phylum Verrucomicrobia   9   4
species [Bacteroides] pectinophilus   3   0
species [Clostridium] alkalicellulosi   1   0
species [Clostridium] asparagiforme   1   0
species [Clostridium] citroniae   2   0
species [Clostridium] colinum   1   0
species [Clostridium] hiranonis   2   0
species [Clostridium] scindens   5   0
species [Clostridium] spiroforme   2   0
species [Eubacterium] dolichum   1   0
species [Eubacterium] infirmum   1   0
species [Eubacterium] saphenum   1   0
species [Hallella] seregens   3   0
species Abiotrophia adiacens   4   0
species Abiotrophia defectiva   2   0
species Abiotrophia sp.   3   0
species Acetanaerobacterium elongatum   1   0
species Acetivibrio ethanolgignens   1   0
species Achromobacter georgiopolitanum   1   0
species Acidaminococcus fermentans   2   0
species Acidaminococcus intestini   4   0
species Acidaminococcus sp.   3   0
species Acidivorax temperans   2   0
species Acidovorax sp. 121606   1   0
species Acinetobacter baumannii   2   0
species Acinetobacter calcoaceticus/baumannii complex   1   0
species Acinetobacter genomosp. 5   1   0
species Acinetobacter soli   1   0
species Acinetobacter sp.   2   0
species ACM 3611   4   0
species Actinobacterium israeli   3   0
species Actinobaculum massiliense   1   0
species Actinomyces cardiffensis   3   0
species Actinomyces dentalis   3   0
species Actinomyces graevenitzii   4   0
species Actinomyces hongkongensis   3   0
species Actinomyces johnsonii   3   0
species Actinomyces massiliensis   2   0
species Actinomyces meyeri   2   0
species Actinomyces naeslundii   4   0
species Actinomyces naeslundii genospecies 2   3   0
species Actinomyces radicidentis   2   0
species Actinomyces sp.   4   0
species Actinomyces timonensis   3   0
species Actinomyces turicensis   1   0
species Actinomyces viscosus   2   0
species Acuformis perennis   1   0
species Adlercreutzia equolifaciens   3   0
species Adlercreutzia sp.   1   0
species Aerobacter aerogenes   3   0
species Aerococcus christensenii   1   0
species Aeromonas shigelloides   3   0
species Agathobaculum butyriciproducens   3   0
species Aggregatibacter actinomycetemcomitans   1   0
species Aggregatibacter aphrophilus   1   0
species Aggregatibacter segnis   2   0
species Agrobacterium pusense   1   0
species AHU 1763   1   0
species Akkermansia muciniphila   14   2
species Akkermansia sp.   4   0
species Alcaligenes sp. (strain BR60)   1   0
species Alistipes finegoldii   4   0
species Alistipes indistinctus   3   0
species Alistipes obesi   1   0
species Alistipes onderdonkii   4   0
species Alistipes putredinis   4   0
species Alistipes senegalensis Mishra et al. 2012   1   0
species Alistipes shahii   2   0
species Alistipes sp.   4   0
species Alistipes sp. NML05A004   0   4
species Alistipes timonensis   3   0
species Allisonella histaminiformans   2   0
species Allobaculum sp. Alo17   1   0
species Alloprevotella rava   4   0
species Alloprevotella tannerae   1   0
species Alloscardovia omnicolens   2   0
species Anaerobacillus macyae (Santini et al. 2004) Zavarzina et al. 2009   1   0
species Anaerococcus obesiensis   1   0
species Anaerococcus octavius   1   0
species Anaerococcus prevotii   1   0
species Anaerococcus sp.   2   0
species Anaerococcus vaginalis   2   0
species Anaerocolumna aminovalerica   1   0
species Anaerofustis stercorihominis   1   0
species Anaeroglobus geminatus   2   0
species Anaeroglobus sp.   1   0
species Anaeromassilibacillus senegalensis   1   0
species Anaeromassilibacillus sp.   2   0
species Anaerosporobacter mobilis   2   1
species Anaerostipes caccae   4   0
species Anaerostipes hadrus   5   0
species Anaerostipes sp.   5   0
species Anaerotruncus colihominis   2   0
species Anaerotruncus sp.   2   0
species Anaerovibrio sp.   1   0
species Angelakisella massiliensis   2   0
species Aquaspirillum dispar   1   0
species ATCC 13146 [[Leuconostoc amelibiosum Schillinger et al. 1989]]   4   0
species ATCC 15483   1   0
species ATCC 25258   2   0
species ATCC 27780   1   0
species ATCC 29062   1   0
species ATCC 29935   1   0
species ATCC 33028   2   0
species ATCC 33072   2   0
species ATCC 33110   2   0
species ATCC 33199   1   0
species ATCC 33241   1   0
species ATCC 33257   1   0
species ATCC 35046   1   0
species ATCC 35313 [[Koserella trabulsii Hickman-Brenner et al. 1985]]   1   0
species ATCC 35469   3   0
species ATCC 35539   1   0
species ATCC 43838   1   0
species ATCC 43921   1   0
species ATCC 43994   2   0
species ATCC 49062   2   0
species ATCC 49124   4   0
species ATCC 49372   1   0
species ATCC 49427   2   0
species ATCC 49559   1   0
species ATCC 49918   3   0
species ATCC 51112   1   0
species ATCC 51114   2   0
species ATCC 51146   1   0
species ATCC 51230   1   0
species ATCC 51266   1   0
species ATCC 51502   2   0
species ATCC 51523   1   0
species ATCC 51767   3   0
species ATCC 51939   1   0
species ATCC 700018   1   0
species ATCC 700285   2   0
species ATCC 700332   2   0
species ATCC 700337   1   0
species ATCC 700542   1   0
species ATCC 700632   2   0
species ATCC 700666   1   0
species ATCC 700779   3   0
species ATCC 8043   2   0
species ATCC BAA-102   2   0
species ATCC BAA-1200   2   0
species ATCC BAA-1383   1   0
species ATCC BAA-303   3   0
species ATCC BAA-960   3   0
species Atlantibacter subterranea (Shelobolina et al. 2005) Hata et al. 2016   1   0
species Atopobium parvulum   5   0
species Atopobium rimae   3   0
species Atopobium sp.   2   0
species Aureobacterium sp.   2   0
species Bacillus aeruginosus   4   0
species Bacillus aminoglucosidicus   1   0
species Bacillus amylolyticus Choukevitch 1911   1   0
species Bacillus coagulans   1   0
species Bacillus fordii   1   0
species Bacillus megaterium   2   0
species Bacillus okuhidaensis   1   0
species Bacillus pseudalcalophilus Nielsen et al. 1995   1   0
species Bacillus simplex   1   0
species Bacillus sp.   2   0
species Bacteridium luteum   1   0
species Bacterium sonnei Levine 1920   1   0
species Bacteroides barnesiae   3   0
species Bacteroides caccae   1   1
species Bacteroides caecimuris   2   0
species Bacteroides cellulosilyticus   3   0
species Bacteroides clarus   3   2
species Bacteroides coagulans   1   0
species Bacteroides coprocola   2   2
species Bacteroides coprophilus   3   0
species Bacteroides dorei   2   2
species Bacteroides eggerthii   3   0
species Bacteroides faecichinchillae   2   0
species Bacteroides faecis   3   2
species Bacteroides finegoldii   3   0
species Bacteroides fluxus   2   0
species Bacteroides fragilis   18   0
species Bacteroides gallinarum   2   0
species Bacteroides graminisolvens   2   0
species Bacteroides helcogenes   3   0
species Bacteroides intestinalis   5   0
species Bacteroides massiliensis   3   8
species Bacteroides mediterraneensis Mailhe et al. 2016   1   0
species Bacteroides nordii   3   0
species Bacteroides oleiciplenus   1   0
species Bacteroides ovatus   7   0
species Bacteroides paurosaccharolyticus   1   0
species Bacteroides plebeius   2   2
species Bacteroides pyogenes   4   0
species Bacteroides reticulotermitis   2   0
species Bacteroides rodentium   3   0
species Bacteroides salanitronis   1   0
species Bacteroides salyersiae   3   8
species Bacteroides sartorii   1   0
species Bacteroides sp.   7   0
species Bacteroides sp. JCM 17101   2   1
species Bacteroides stercoris   6   1
species Bacteroides thetaiotaomicron   5   13
species Bacteroides uniformis   8   2
species Bacteroides vulgatus   11   14
species Bacteroides xylanisolvens   4   0
species Barnesiella intestinihominis   2   11
species Barnesiella viscericola   1   0
species beta proteobacterium KSP3   1   0
species Bifidobacterium adolescentis   5   0
species Bifidobacterium animalis   4   0
species Bifidobacterium bifidum   5   0
species Bifidobacterium breve   3   0
species Bifidobacterium catenulatum   2   0
species Bifidobacterium dentium   3   0
species Bifidobacterium longum   9   0
species Bifidobacterium pseudocatenulatum   4   0
species Bifidobacterium pseudolongum   2   0
species Bifidobacterium pseudolongum   4   0
species Bifidobacterium sp.   5   0
species Bilophila sp.   1   0
species Bilophila wadsworthia   3   1
species Blautia coccoides   2   0
species Blautia faecis   2   2
species Blautia glucerasea   0   2
species Blautia hansenii   0   2
species Blautia hydrogenotrophica   3   5
species Blautia luti   0   2
species Blautia obeum   4   8
species Blautia producta   3   0
species Blautia sp.   6   0
species Blautia sp. YHC-4   0   2
species Blautia wexlerae   0   1
species Bradyrhizobium sp.   2   0
species Brucella tularensis   6   0
species Bulleidia extructa   1   0
species Butyricicoccus pullicaecorum   5   0
species Butyricicoccus sp.   4   0
species Butyricimonas faecihominis   0   2
species Butyricimonas sp.   4   0
species Butyricimonas sp. 214-4   0   5
species Butyricimonas synergistica   2   0
species Butyricimonas virosa   4   0
species Butyrivibrio crossotus   1   0
species Butyrivibrio fibrisolvens   1   0
species Butyrivibrio sp.   1   0
species Campylobacter concisus   2   0
species Campylobacter curvus   2   0
species Campylobacter gracilis   1   0
species Campylobacter sp.   2   0
species Campylobacter ureolyticus   1   0
species Candidatus Bacteroides periocalifornicus McLean et al. 2015   1   0
species Candidatus Methanomethylophilus alvus Borrel et al. 2012   1   0
species Candidatus Prevotella conceptionensis Fenollar et al. 2006   2   0
species Capnocytophaga gingivalis   3   0
species Capnocytophaga leadbetteri   2   0
species Capnocytophaga sp.   3   0
species Capnocytophaga sputigena   2   0
species Cardiobacterium hominis   1   0
species Cardiobacterium sp.   3   0
species Catabacter hongkongensis   3   0
species Catenibacterium sp.   1   0
species Catonella morbi   2   1
species CAV   1   0
species CCM 3540   1   0
species CCM 7299   2   0
species CCUG 353   1   0
species CCUG 41967   3   0
species CCUG 45813   1   0
species CCUG 45998 A   1   0
species CCUG 46149   3   0
species CCUG 46150   1   0
species CCUG 47503   1   0
species CCUG 48363   2   0
species CCUG 48456   2   0
species CCUG 48460   1   0
species CCUG 54362   1   0
species CCUG 556   1   0
species CCUG 55896   1   0
species CCUG 57945   2   0
species CCUG 60371   2   0
species CCUG 64422   1   0
species CECT 5975   3   0
species Cetobacterium sp.   1   0
species Christensenella minuta   1   1
species Christensenella sp.   1   0
species Chryseobacterium sp.   2   0
species CIP 106922   2   0
species CIP 109788   2   0
species CIP 109839   1   0
species CIP 110771   2   0
species CIPP II   3   0
species Citrobacter freundii   3   0
species Citrobacter sp.   2   0
species Cloacibacillus evryensis   1   0
species Cloacibacillus porcorum   3   0
species Cloacibacterium sp.   1   0
species Clostridiaceae bacterium JC118   1   0
species Clostridiales bacterium 1_7_47FAA   2   0
species Clostridiales bacterium L2-14   2   0
species Clostridium bolteae   6   0
species Clostridium butyricum   8   0
species Clostridium celatum   1   0
species Clostridium chartatabidum   0   2
species Clostridium citroniae   1   0
species Clostridium clostridioforme   4   0
species Clostridium cocleatum   1   0
species Clostridium difficile   4   0
species Clostridium glycyrrhizinilyticum   2   0
species Clostridium hylemonae   1   0
species Clostridium innocuum   4   0
species Clostridium lactatifermentans   0   1
species Clostridium leptum   6   0
species Clostridium methylpentosum   3   0
species Clostridium neonatale Bouvet et al. 2014   1   0
species Clostridium paraputrificum   1   0
species Clostridium perfringens   5   0
species Clostridium sp.   6   0
species Clostridium spiroforme   1   0
species Clostridium symbiosum   7   0
species Clostridium tertium   2   0
species Clostridium ventriculi   1   0
species Coccobacillus pfeifferi   5   0
species Collinsella aerofaciens   2   8
species Collinsella intestinalis   2   0
species Collinsella sp.   5   0
species Collinsella tanakaei   1   1
species Coprobacter fastidiosus   2   0
species Coprobacter sp.   3   0
species Coprococcus catus   4   0
species Coprococcus comes   3   0
species Coprococcus eutactus   5   0
species Coprococcus sp.   4   0
species Corynebacterium ammoniagenes   1   0
species Corynebacterium durum   1   0
species Corynebacterium sp.   4   0
species CRBIP 24.179   3   0
species Cronobacter sakazakii   2   0
species Cryptobacterium curtum   1   0
species CSUR P3241   1   0
species Cutibacterium sp.   2   0
species Desulfomicrobium orale   1   0
species Desulfovibrio desulfuricans   2   0
species Desulfovibrio piger   2   11
species Desulfovibrio sp.   3   0
species Desulfovibrio vulgaris   1   0
species Dialister invisus   4   0
species Dialister pneumosintes   2   0
species Dialister sp.   4   0
species Dolosigranulum pigrum   2   0
species Dorea formicigenerans   5   33
species Dorea longicatena   4   6
species Dorea sp.   5   0
species DSM 102344   1   0
species DSM 103034   3   0
species DSM 1135   1   0
species DSM 14437   2   0
species DSM 17055   3   0
species DSM 19284   2   0
species DSM 20284   3   0
species DSM 21459   1   0
species DSM 22759   2   0
species DSM 22761   1   0
species DSM 24301   2   0
species DSM 26109   2   0
species DSM 28989   2   0
species DSM 39   2   0
species DSM 4782   1   0
species DSM 7271   3   0
species Dysgonomonas capnocytophagoides   2   0
species Dysgonomonas sp.   1   0
species Effusibacillus pohliae   1   0
species Eggerthella lenta   8   12
species Eggerthella sp.   1   0
species Eggerthia catenaformis   2   0
species Eikenella corrodens   2   0
species Eisenbergiella sp.   4   0
species Eisenbergiella tayi   2   1
species Emergencia sp.   5   0
species Enorma massiliensis   3   0
species Enorma sp.   1   0
species Enterobacter hormaechei   1   0
species Enterobacter oryzaendophyticus   2   0
species Enterobacter sp.   2   0
species Enterococcus asini   1   0
species Enterococcus cecorum   1   0
species Enterococcus faecalis   7   0
species Enterococcus faecium   4   0
species Enterococcus gallinarum   5   0
species Enterococcus mundtii   1   0
species Enterococcus sp.   1   0
species Erysipelatoclostridium ramosum   4   0
species Escherichia albertii   2   0
species Escherichia citrophila (Asai et al. 1957) Asai et al. 1962   1   0
species Escherichia coli   18   1
species Escherichia sp.   3   0
species Eubacterium brachy   1   0
species Eubacterium desmolans   1   0
species Eubacterium eligens   5   0
species Eubacterium hallii   6   0
species Eubacterium limosum   3   0
species Eubacterium oxidoreducens   2   2
species Eubacterium oxidoreducens   1   0
species Eubacterium ramulus   1   0
species Eubacterium rectale   7   0
species Eubacterium siraeum   3   0
species Eubacterium sp.   6   0
species Eubacterium uniforme   2   0
species Eubacterium ventriosum   1   0
species Faecalibacterium prausnitzii   18   25
species Faecalibacterium sp.   6   0
species Faecalibacterium sp. canine oral taxon 147   0   1
species Faecalicoccus pleomorphus   2   0
species Faecalitalea cylindroides   3   0
species Filifactor alocis   1   0
species Finegoldia magna   1   0
species Flavibacterium sp.   1   0
species Flavonifractor plautii   3   0
species Flavonifractor sp.   5   0
species Fournierella sp.   4   0
species Fusicatenibacter saccharivorans   1   1
species Fusobacterium mortiferum   1   0
species Fusobacterium nucleatum   5   0
species Fusobacterium periodonticum   1   0
species Fusobacterium sp.   5   0
species Fusobacterium ulcerans   1   0
species Fusobacterium varium   2   0
species Gardnerella vaginalis   3   0
species Gemella asaccharolytica   1   0
species Gemella bergeri   1   0
species Gemella morbillorum   4   0
species Gemella sp.   2   0
species Gemmiger formicilis   2   0
species Gordonibacter pamelaeae   4   1
species Gordonibacter sp.   1   0
species Gordonibacter urolithinfaciens   3   0
species Granulicatella elegans   4   0
species Granulicatella sp.   3   0
species Haemophilus haemolyticus   1   0
species Haemophilus parahaemolyticus   1   0
species Haemophilus parainfluenzae   6   1
species Haemophilus paraphrohaemolyticus   3   0
species Haemophilus pittmaniae   2   0
species Haemophilus quentini Olsen et al. 2005   1   0
species Haemophilus sp.   2   0
species Haemophilus sputorum   1   0
species Helicobacter pylori   1   0
species Holdemanella biformis   2   0
species Holdemanella sp.   4   0
species Holdemania filiformis   2   0
species Holdemania sp.   3   0
species Howardella ureilytica   0   1
species Hungatella hathewayi   5   0
species HUT 6613   1   0
species IMSNU 11154   1   0
species Intestinibacter bartlettii   3   0
species Intestinimonas butyriciproducens   6   0
species Intestinimonas sp.   2   0
species JCM 1039   1   0
species JCM 1093   3   0
species JCM 5829   1   0
species JCM 5830   1   0
species JCM 8722   4   0
species JCM 8725   1   0
species Kingella denitrificans   2   0
species Kingella oralis   2   0
species Klebsiella ornithinolytica   2   0
species Klebsiella pneumoniae aerogenes   7   0
species Klebsiella sp.   1   0
species Kluyvera ascorbata   2   0
species Kluyvera georgiana   2   0
species Kocuria kristinae   1   0
species Kytococcus sedentarius   4   0
species Lachnoanaerobaculum saburreum   3   0
species Lachnoanaerobaculum sp.   3   0
species Lachnoanaerobaculum umeaense   4   0
species Lachnoclostridium sp.   1   0
species Lachnospira pectinoschiza   2   1
species Lachnospira sp.   5   0
species Lachnospiraceae bacterium oral taxon 082   1   0
species Lactobacillus acidophilus   3   0
species Lactobacillus agilis   2   0
species Lactobacillus amylolyticus   1   0
species Lactobacillus curvatus   3   0
species Lactobacillus delbrueckii   2   0
species Lactobacillus equi   2   0
species Lactobacillus fermentum   6   0
species Lactobacillus gasseri   5   0
species Lactobacillus ingluviei   1   0
species Lactobacillus intestinalis   1   0
species Lactobacillus johnsonii   2   0
species Lactobacillus kalixensis   1   0
species Lactobacillus mucosae   4   0
species Lactobacillus murinus   1   0
species Lactobacillus paracasei   3   0
species Lactobacillus plantarum   4   0
species Lactobacillus reuteri   4   0
species Lactobacillus rhamnosus   2   0
species Lactobacillus rogosae   1   0
species Lactobacillus saerimneri   1   0
species Lactobacillus sakei   3   0
species Lactobacillus salivarius   6   0
species Lactobacillus sp.   3   0
species Lactobacillus vaginalis   3   0
species Lactococcus lactis   3   0
species Lactococcus sp.   2   0
species Lactonifactor longoviformis   3   0
species Lautropia mirabilis   2   0
species Leadbetterella byssophila   3   0
species Leclercia adecarboxylata   1   0
species Leclercia sp.   1   0
species Leminorella grimontii   1   0
species Leptotrichia hofstadii   1   0
species Leptotrichia sp.   5   0
species Leptotrichia trevisanii   3   0
species Leptotrichia wadei   1   0
species Leucobacter sp.   1   0
species Leuconostoc lactis   2   0
species Leuconostoc mesenteroides   1   0
species LMG:18984   2   0
species LMG:2665   1   0
species LMG:5290   2   0
species LMG:5313   2   0
species LMG:7884   1   0
species LMG:7944   1   0
species LMG:9496   3   0
species Marvinbryantia sp.   2   0
species Massilimicrobiota timonensis Tall et al.   1   0
species Massilioclostridium sp.   2   0
species Megamonas hypermegale   2   0
species Megamonas sp.   1   0
species Megasphaera elsdenii   1   0
species Megasphaera micronuciformis   4   0
species Megasphaera sp.   4   0
species Merdibacter massiliensis   1   0
species Methanobrevibacter smithii   7   0
species Methanobrevibacter sp.   2   0
species Methanomassiliicoccus luminyensis   1   0
species Methanosphaera cuniculi   2   0
species Methanosphaera stadtmanae   1   0
species Micromonas sp. (in: Bacteria)   3   0
species Mitsuokella jalaludinii   1   0
species Mitsuokella sp.   2   0
species Mogibacterium sp.   4   0
species Moraxella osloensis   2   0
species Morganella morganii   2   0
species Murimonas intestini   1   0
species MUTK 20   2   0
species Mycoplasma hominis   2   0
species Negativicoccus massiliensis Togo et al. 2016   2   0
species Negativicoccus succinicivorans   2   0
species Neglecta sp.   3   0
species Neisseria cinerea   2   0
species Neisseria flavescens   3   0
species Neisseria meningitidis   3   0
species Neisseria sp.   2   0
species Nocardioides dubius   3   0
species Odoribacter laneus   2   0
species Odoribacter sp.   4   0
species Odoribacter splanchnicus   4   4
species Olsenella profusa   3   0
species Olsenella sp.   4   0
species Olsenella uli   3   0
species Oribacterium sinus   2   0
species Oribacterium sp.   4   0
species Oscillibacter ruminantium   1   0
species Oscillibacter sp.   5   0
species Oscillibacter valericigenes   1   3
species Ottowia sp.   2   0
species Oxalobacter formigenes   3   0
species Oxalobacter sp.   2   0
species Paenibacillus sp.   1   0
species Paeniclostridium sordellii   1   0
species Papillibacter cinnamivorans   0   3
species Parabacteroides chinchillae   1   0
species Parabacteroides distasonis   8   1
species Parabacteroides faecis   0   1
species Parabacteroides goldsteinii   2   0
species Parabacteroides gordonii   2   0
species Parabacteroides johnsonii   3   14
species Parabacteroides merdae   5   15
species Parabacteroides sp.   4   0
species Paraburkholderia sp.   1   0
species Paraclostridium bifermentans   2   0
species Paraprevotella clara   2   5
species Paraprevotella sp.   4   0
species Paraprevotella xylaniphila   1   0
species Parascardovia denticolens   2   0
species Parasutterella excrementihominis   1   0
species Parasutterella sp.   3   0
species Parvimonas micra   2   0
species PCU:282   1   0
species Pediococcus pentosaceus   1   0
species Peptococcus niger   1   0
species Peptoniphilus lacrimalis   0   1
species Peptoniphilus rhinitidis Kim et al. 2012   1   0
species Peptoniphilus sp.   5   0
species Peptostreptococcus anaerobius   3   0
species Peptostreptococcus sp.   4   0
species Peptostreptococcus stomatis   3   0
species Phascolarctobacterium faecium   5   0
species Phascolarctobacterium sp.   4   0
species Phascolarctobacterium succinatutens   0   9
species Phocaeicola abscessus   1   0
species Photobacterium damselae   1   0
species Porphyromonas asaccharolytica   1   0
species Porphyromonas bennonis   2   0
species Porphyromonas cangingivalis   1   0
species Porphyromonas catoniae   4   0
species Porphyromonas endodontalis   3   0
species Porphyromonas gingivalis   2   0
species Porphyromonas somerae   4   0
species Porphyromonas sp.   4   0
species Porphyromonas uenonis   2   0
species Prevotella albensis   1   0
species Prevotella amnii   2   0
species Prevotella aurantiaca   2   0
species Prevotella baroniae   2   0
species Prevotella bergensis   1   0
species Prevotella bivia   3   0
species Prevotella buccae   2   0
species Prevotella buccalis   2   2
species Prevotella colorans   1   0
species Prevotella copri   10   0
species Prevotella corporis   2   0
species Prevotella denticola   3   0
species Prevotella disiens   0   1
species Prevotella histicola   5   0
species Prevotella intermedia   2   0
species Prevotella loescheii   2   0
species Prevotella maculosa   3   0
species Prevotella marshii   2   0
species Prevotella melaninogenica   2   0
species Prevotella micans   4   0
species Prevotella multiformis   1   0
species Prevotella multisaccharivorax   2   0
species Prevotella nanceiensis   2   0
species Prevotella nigrescens   3   0
species Prevotella oralis   5   0
species Prevotella oris   2   0
species Prevotella oulorum   2   0
species Prevotella pallens   2   0
species Prevotella paludivivens   1   0
species Prevotella pleuritidis   2   0
species Prevotella saccharolytica   3   0
species Prevotella salivae   3   0
species Prevotella shahii   2   0
species Prevotella sp.   5   0
species Prevotella stercorea   2   0
species Prevotella timonensis   1   0
species Prevotella veroralis   2   0
species Propionibacterium sp.   2   0
species Proteus mirabilis   2   0
species Proteus vulgaris   3   0
species Pseudoflavonifractor capillosus   6   1
species Pseudoflavonifractor sp.   2   0
species Pseudomonas aeruginosa group   2   0
species Pseudomonas putida   1   0
species Pseudopedobacter saltans   1   0
species Pseudopropionibacterium sp.   2   0
species Pseudoramibacter alactolyticus   3   0
species Pseudoramibacter sp.   1   0
species Psychrobacillus sp.   1   0
species Pyramidobacter piscolens   2   0
species Pyramidobacter sp.   1   0
species Raoultella sp.   3   0
species Rikenella microfusus   3   0
species Robinsoniella peoriensis   1   0
species Robinsoniella sp.   1   0
species Romboutsia ilealis   1   0
species Romboutsia sp.   4   0
species Roseburia faecis   3   32
species Roseburia hominis   2   0
species Roseburia intestinalis   3   1
species Roseburia inulinivorans   7   4
species Roseburia sp.   5   0
species Rothia aeria   4   0
species Rothia dentocariosa   5   0
species Rothia mucilaginosa   3   0
species Rothia sp.   3   0
species Ruminiclostridium sp.   5   0
species Ruminococcaceae bacterium D16   3   0
species Ruminococcus albus   1   0
species Ruminococcus bicirculans   1   0
species Ruminococcus bromii   2   0
species Ruminococcus callidus   2   0
species Ruminococcus champanellensis   1   0
species Ruminococcus faecis   0   1
species Ruminococcus gauvreauii   2   0
species Ruminococcus gnavus   10   0
species Ruminococcus lactaris   1   0
species Ruminococcus sp.   7   0
species Ruminococcus torques   8   0
species Salmonella enterica   1   0
species Sanguibacteroides justesenii Sydenham et al. 2015   3   0
species Scardovia inopinata   3   0
species Scardovia wiggsiae   3   0
species Selenomonas artemidis   3   0
species Selenomonas flueggei   1   0
species Selenomonas noxia   2   0
species Selenomonas sputigena   3   0
species Shuttleworthia satelles   2   0
species Siccibacter sp.   1   0
species Slackia exigua   3   0
species Slackia piriformis   1   3
species Slackia sp.   1   0
species Sneathia sanguinegens   1   0
species Solobacterium moorei   2   0
species Sphingobacterium sp.   1   0
species Staphylococcus aureus   5   0
species Staphylococcus capitis   2   0
species Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916   2   0
species Staphylococcus pasteuri   2   0
species Staphylococcus xylosus   2   0
species Stenotrophomonas maltophilia   1   0
species Stenotrophomonas maltophilia complex   1   0
species Stomatobaculum longum   3   0
species Streptococcus agalactiae   1   0
species Streptococcus anginosus   3   0
species Streptococcus australis   2   0
species Streptococcus constellatus   2   0
species Streptococcus cristatus   3   0
species Streptococcus dysgalactiae   1   0
species Streptococcus G418   6   0
species Streptococcus gordonii   3   0
species Streptococcus intermedius   2   0
species Streptococcus massiliensis   2   0
species Streptococcus mitis   6   0
species Streptococcus mutans   2   0
species Streptococcus oralis   3   0
species Streptococcus oralis   3   0
species Streptococcus orisratti   1   0
species Streptococcus parauberis   1   0
species Streptococcus peroris   2   0
species Streptococcus pneumoniae   3   0
species Streptococcus pyogenes   1   0
species Streptococcus salivarius   3   0
species Streptococcus sanguinis   4   0
species Streptococcus sobrinus   2   0
species Streptococcus thermophilus   5   0
species Streptomyces cattleya   2   0
species Subdoligranulum sp.   4   0
species Subdoligranulum variabile   2   15
species Succinatimonas hippei   1   0
species Succinivibrio sp.   4   0
species Sutterella sp.   6   0
species Sutterella stercoricanis   0   2
species Sutterella wadsworthensis   5   1
species Synergistes jonesii   1   0
species Syntrophomonas sp.   1   0
species Tannerella forsythia   2   0
species Tannerella sp.   2   0
species Terrisporobacter sp.   2   0
species Torulopsis   1   0
species Treponema socranskii   1   0
species Trichococcus sp.   1   0
species Trueperella pyogenes   2   0
species Turicibacter sanguinis   1   0
species Tyzzerella nexilis   3   1
species Tyzzerella sp.   4   0
species Varibaculum sp.   2   0
species Variovorax sp.   2   0
species Veillonella atypica   3   0
species Veillonella dispar   3   0
species Veillonella montpellierensis   1   0
species Veillonella parvula   3   0
species Veillonella rogosae   5   0
species Veillonella sp.   5   0
species Veillonella tobetsuensis   3   0
species Vibrio jejuni   1   0
species Victivallis vadensis   2   0
species VPI 1550   1   0
species Weissella paramesenteroides   1   0
species Wolinella recta   4   0
species Yersinia ruckeri   1   0
strain 'Streptococcus oralis subsp. tigurinus'   2   0
strain Anaerobutyricum hallii ATCC 27751   1   0
strain Clostridium beijerinckii NCIMB 8052   1   0
strain Saccharomyces cerevisiae   1   0
suborder Coriobacterineae   1   0
subspecies Bifidobacterium animalis subsp. lactis   1   0
subspecies Bifidobacterium longum subsp. infantis   1   0
superphylum Bacteroidetes/Chlorobi group   0   8

Anonymous (Legacy User)