Bacteria Associated with Symptoms (Citizen Science)

The tables below were determined from results detected by Symptom Explorer and then recorded to the database. Second are Conditions, which are the bacteria counts reported as abnormal by published studies. If a strain was detected as significant, then we included its parents(genus,family,order,class, phylum) in the count.

These bacteria are shifted in some manner (may be high, low, or just shifted). The purpose is to attempt to identify what bacteria that seems most associated with poor health. The number is the number of times it was reported in studies or in Explorer. It is not a count of the bacteria.

Association of Taxa with Symptoms or Conditions

Tax_rank	tax_name	Symptom References	Condition References
class	Acidimicrobiia	1	0
class	Acidobacteria	1	0
class	Acidobacteriia	24	42
class	Alphaproteobacteria	1	1
class	Anaerolineae	1	0
class	Bacilli	10	4
class	Bacteroidetes	21	55
class	Betaproteobacteria	2	8
class	Chlamydiia	1	0
class	Chloroflexia	2	0
class	Clostridia	21	6
class	Coriobacteriia	4	44
class	Cytophagia	0	38
class	Deferribacteres	2	2
class	Deinococci	0	1
class	Deltaproteobacteria	5	18
class	Dothideomycetes	1	0
class	Epsilonproteobacteria	1	1
class	Erysipelotrichia	1	0
class	Fibrobacteria	0	2
class	Flavobacteriia	0	12
class	Fusobacteriia	5	0
class	Gammaproteobacteria	8	5
class	Kiritimatiellae	2	0
class	Lentisphaeria	0	1
class	Mollicutes	1	0
class	Negativicutes	3	23
class	Sphingobacteriia	0	19
class	Spirochaetia	1	13
class	Tissierellia	0	132
class	Verrucomicrobiae	4	6
family	Acidaminococcaceae	9	11
family	Actinomycetaceae	2	28
family	Aerococcaceae	2	1
family	Aeromonadaceae	1	0
family	Akkermansiaceae	2	3
family	Alcaligenaceae	1	7
family	Anaerolineaceae	1	0
family	Aphanizomenonaceae	0	9
family	Atopobiaceae	3	1
family	Bacillaceae	0	1
family	Bacillales Family X. Incertae Sedis	0	12
family	Bacteroidaceae	16	2
family	Barnesiellaceae	6	81
family	Bifidobacteriaceae	12	4
family	Burkholderiaceae	1	82
family	Campylobacteraceae	1	1
family	Carnobacteriaceae	3	0
family	Catabacteriaceae	2	0
family	Chitinophagaceae	1	0
family	Christensenellaceae	14	0
family	Clostridiaceae	15	2
family	Clostridiales Family IV. Incertae Sedis	1	0
family	Clostridiales Family XI. Incertae Sedis	1	0
family	Clostridiales Family XIII. Incertae Sedis	0	1
family	Clostridiales incertae sedis	0	29
family	Comamonadaceae	2	3
family	Coriobacteriaceae	8	20
family	Corynebacteriaceae	3	8
family	Dermabacteraceae	2	0
family	Desulfobulbaceae	2	0
family	Desulfovibrionaceae	7	21
family	Dysgonamonadaceae	0	58
family	Eggerthellaceae	6	7
family	Elusimicrobiaceae	2	0
family	Enterobacteriaceae	29	12
family	Enterococcaceae	7	0
family	Erysipelotrichaceae	20	0
family	Eubacteriaceae	4	70
family	Flavobacteriaceae	0	11
family	Fusobacteriaceae	2	0
family	Gracilibacteraceae	1	0
family	Helicobacteraceae	1	0
family	Hungateiclostridiaceae	1	178
family	Hymenobacteraceae	0	1
family	Lachnospiraceae	43	3
family	Lactobacillaceae	14	7
family	Leptospiraceae	1	0
family	Leuconostocaceae	1	0
family	Listeriaceae	0	1
family	Marinifilaceae	1	0
family	Marinilabiliaceae	0	1
family	Methanobacteriaceae	1	0
family	Methylobacteriaceae	1	0
family	Micrococcaceae	1	28
family	Moraxellaceae	1	7
family	Morganellaceae	0	34
family	Muribaculaceae	6	0
family	Mycoplasmataceae	1	13
family	Neisseriaceae	1	0
family	Nitrospiraceae	1	0
family	Nocardiaceae	2	0
family	Odoribacteraceae	2	13
family	Oscillospiraceae	12	15
family	Oxalobacteraceae	0	9
family	Paenibacillaceae	1	0
family	Paludibacteraceae	4	0
family	Pasteurellaceae	3	1
family	Peptococcaceae	6	6
family	Peptoniphilaceae	0	9
family	Peptostreptococcaceae	8	17
family	Planococcaceae	0	21
family	Porphyromonadaceae	13	3
family	Prevotellaceae	16	1
family	Propionibacteriaceae	1	2
family	Pseudomonadaceae	2	7
family	Rhodanobacteraceae	0	7
family	Rhodocyclaceae	1	0
family	Rikenellaceae	17	0
family	Ruminococcaceae	43	9
family	Selenomonadaceae	1	17
family	Sphingobacteriaceae	0	14
family	Sphingomonadaceae	2	22
family	Spirochaetaceae	0	2
family	Staphylococcaceae	2	0
family	Sterolibacteriaceae	0	2
family	Streptococcaceae	8	1
family	Streptomycetaceae	1	0
family	Sutterellaceae	6	7
family	Syntrophobacteraceae	0	1
family	Syntrophomonadaceae	1	0
family	Tannerellaceae	2	1
family	Thermoanaerobacterales Family III. Incertae Sedis	0	7
family	Thermotogaceae	1	0
family	Tissierellaceae	2	0
family	Veillonellaceae	16	3
family	Verrucomicrobiaceae	5	3
family	Vibrionaceae	1	0
family	Victivallaceae	1	2
family	Xanthomonadaceae	0	1
family	Yersiniaceae	0	13
family	Zoogloeaceae	0	56
genus	Abiotrophia	5	0
genus	Absiella	0	66
genus	Acetitomaculum	0	1
genus	Acetivibrio	2	0
genus	Acetobacter	1	0
genus	Acetobacterium	0	25
genus	Acetobacteroides	1	0
genus	Acidaminococcus	10	10
genus	Acidipropionibacterium	1	0
genus	Acidovorax	1	0
genus	Acinetobacter	4	0
genus	Actinobacillus	4	0
genus	Actinomyces	15	0
genus	Actinopolyspora	1	0
genus	Adlercreutzia	13	4
genus	Aeriscardovia	1	0
genus	Aerococcus	1	0
genus	Aeromonas	2	0
genus	Aestuariispira	1	0
genus	Agathobacter	10	0
genus	Agathobaculum	0	123
genus	Aggregatibacter	4	0
genus	Akkermansia	24	3
genus	Alistipes	32	3
genus	Alkaliphilus	1	5
genus	Allobaculum	3	0
genus	Alloprevotella	7	0
genus	Alloscardovia	3	0
genus	Anaerobutyricum	0	119
genus	Anaerococcus	4	3
genus	Anaerofilum	2	7
genus	Anaerofustis	3	1
genus	Anaeroglobus	2	0
genus	Anaeromassilibacillus	2	0
genus	Anaeroplasma	2	0
genus	Anaerosporobacter	1	1
genus	Anaerostipes	21	8
genus	Anaerotaenia	1	0
genus	Anaerotignum	0	124
genus	Anaerotruncus	15	17
genus	Angelakisella	3	0
genus	Asaccharobacter	1	0
genus	Atopobium	9	0
genus	Atopostipes	1	0
genus	Bacillus	5	1
genus	Bacillus	4	0
genus	Bacteroides	48	2
genus	Barnesiella	12	11
genus	Bifidobacterium	46	5
genus	Bilophila	19	3
genus	Bittarella	1	0
genus	Blautia	36	26
genus	Bradyrhizobium	2	0
genus	Brevibacterium	1	0
genus	Bulleidia	1	0
genus	Burkholderia	4	0
genus	Butyricicoccus	17	0
genus	Butyricimonas	12	6
genus	Butyrivibrio	9	2
genus	c2-like viruses	1	0
genus	Caloramator	1	2
genus	Campylobacter	10	1
genus	Candida	1	0
genus	Candidatus Homeothermus	4	0
genus	Candidatus Microthrix	1	0
genus	Candidatus Phytoplasma	0	1
genus	Candidatus Rhabdochlamydia	1	0
genus	Candidatus Saccharimonas	1	0
genus	Candidatus Soleaferrea	1	1
genus	Candidatus Stoquefichus	3	0
genus	Capnocytophaga	3	0
genus	Cardiobacterium	3	0
genus	Carnobacterium	1	0
genus	Catabacter	2	0
genus	Catenibacterium	10	2
genus	Catenisphaera	1	0
genus	Catonella	0	8
genus	Cellulosibacter	1	0
genus	Cellulosilyticum	1	0
genus	Centipeda	3	0
genus	Centipeda	3	0
genus	Cereus	1	0
genus	Cetobacterium	3	0
genus	Christensenella	3	0
genus	Chryseobacterium	2	0
genus	Cloacibacterium	1	0
genus	Clostridium	38	1
genus	Colidextribacter	1	0
genus	Collinsella	21	18
genus	Comamonas	2	0
genus	Coprobacillus	12	6
genus	Coprobacter	3	0
genus	Coprococcus	28	2
genus	Coriobacterium	1	0
genus	Corynebacterium	9	6
genus	Criibacterium	2	0
genus	Cronobacter	1	0
genus	Cryptobacterium	2	0
genus	Cutibacterium	2	0
genus	Dehalobacterium	3	0
genus	Deinococcus	1	0
genus	Desulfofarcimen	0	48
genus	Desulfotomaculum	1	0
genus	Desulfovibrio	21	0
genus	Dialister	22	2
genus	Dielma	1	0
genus	Dolichospermum	0	1
genus	Dorea	23	4
genus	Dyadobacter	0	2
genus	Dysgonomonas	1	2
genus	Edwardsiella	1	0
genus	Eggerthella	17	8
genus	Eggerthia	1	0
genus	Eikenella	1	0
genus	Eisenbergiella	5	1
genus	Elusimicrobium	1	0
genus	Emergencia	4	0
genus	Enhydrobacter	1	0
genus	Enterobacter	14	0
genus	Enterococcus	27	1
genus	Enterorhabdus	1	0
genus	Epulopiscium	2	0
genus	Erwinia	2	0
genus	Erysipelatoclostridium	12	24
genus	Escherichia	31	0
genus	Eubacterium	25	41
genus	Ezakiella	2	0
genus	Facklamia	1	1
genus	Faecalibacterium	45	32
genus	Faecalibaculum	2	0
genus	Faecalicatena	0	90
genus	Faecalicoccus	1	0
genus	Faecalitalea	2	0
genus	Fibrobacter	0	2
genus	Finegoldia	5	1
genus	Flavobacterium	5	0
genus	Flavonifractor	13	6
genus	Fournierella	5	0
genus	Fretibacterium	2	0
genus	Fusicatenibacter	5	2
genus	Fusobacterium	20	0
genus	Gallibacterium	1	0
genus	Gardnerella	1	0
genus	Gelria	1	0
genus	Gemella	11	1
genus	Gemmiger	5	0
genus	Geosporobacter	1	0
genus	Gordonibacter	9	2
genus	Gracilibacter	1	0
genus	Granulicatella	7	0
genus	Haemophilus	21	1
genus	Hafnia	1	0
genus	Halomonas	1	0
genus	Hathewaya	0	38
genus	Helicobacter	6	0
genus	Hespellia	0	4
genus	Holdemanella	4	1
genus	Holdemania	6	1
genus	Howardella	1	1
genus	Hungateiclostridium	0	143
genus	Hungatella	1	0
genus	Hyphomicrobium	1	0
genus	Insolitispirillum	0	7
genus	Intestinibacter	6	8
genus	Intestinimonas	5	3
genus	Johnsonella	3	0
genus	Jonquetella	1	0
genus	Klebsiella	21	0
genus	Lachnoanaerobaculum	3	0
genus	Lachnobacterium	1	0
genus	Lachnoclostridium	8	0
genus	Lachnospira	20	2
genus	Lactobacillus	40	0
genus	Lactococcus	8	0
genus	Lactonifactor	1	0
genus	Lambda-like viruses	1	0
genus	Lautropia	1	0
genus	Lawsonella	1	0
genus	Leclercia	1	0
genus	Leptotrichia	7	0
genus	Leucobacter	1	0
genus	Leuconostoc	4	0
genus	Levinea Young et al. 1971	11	0
genus	Levyella	1	0
genus	Libanicoccus	2	0
genus	Mannheimia	1	0
genus	Marvinbryantia	2	16
genus	Massilioclostridium	2	0
genus	Megamonas	18	0
genus	Megasphaera	16	18
genus	Merdibacter	4	0
genus	Methanobrevibacter	17	0
genus	Methanosphaera	3	0
genus	Methylobacterium	1	0
genus	Microbacterium	2	0
genus	Mitsuokella	6	0
genus	Mogibacterium	7	1
genus	Monoglobus	1	0
genus	Moraxella	1	0
genus	Morganella	3	0
genus	Morganella	2	0
genus	Morganella Cockerell, 1897	2	0
genus	Moryella	0	12
genus	Murdochiella	1	0
genus	Murimonas	1	0
genus	Mycobacterium	3	0
genus	Mycoplana	1	0
genus	Mycoplasma	1	7
genus	Neglecta	3	0
genus	Neisseria	7	0
genus	Nissabacter	1	0
genus	Novispirillum	1	0
genus	Odoribacter	20	7
genus	Olivibacter	0	1
genus	Olsenella	8	0
genus	Oribacterium	9	8
genus	Oscillibacter	17	2
genus	Oscillospira	10	11
genus	Ottowia	2	0
genus	Oxalobacter	6	0
genus	Pachytichospora	1	0
genus	Paenibacillus	4	0
genus	Pantoea	4	0
genus	Papillibacter	0	2
genus	Parabacteroides	33	1
genus	Paraburkholderia	2	0
genus	Paraprevotella	14	6
genus	Parascardovia	1	0
genus	Parasutterella	13	0
genus	Parvimonas	12	0
genus	Pectinatus	0	1
genus	Pediococcus	2	0
genus	Pedobacter	1	23
genus	Pelagibacterium	1	0
genus	Peptoclostridium	1	1
genus	Peptococcus	2	6
genus	Peptoniphilus	5	6
genus	Peptostreptococcus	9	0
genus	Phascolarctobacterium	17	1
genus	Phocea	3	0
genus	Porphyromonas	15	2
genus	Prevotella	45	11
genus	Prevotellamassilia	4	0
genus	Propionibacterium	6	0
genus	Propionispora	0	2
genus	Proteiniborus	1	0
genus	Proteus	1	0
genus	Proteus	6	46
genus	Providencia	1	0
genus	Pseudobutyrivibrio	6	42
genus	Pseudoclostridium	0	7
genus	Pseudoflavonifractor	6	14
genus	Pseudomonas	13	0
genus	Pseudopropionibacterium	2	0
genus	Pseudoramibacter	1	0
genus	Psychrobacillus	1	0
genus	Pyramidobacter	6	0
genus	Ralstonia	1	0
genus	Raoultella	4	0
genus	Rhodococcus	2	0
genus	Rhodococcus	4	0
genus	Robinsoniella	1	1
genus	Romboutsia	13	0
genus	Roseburia	35	15
genus	Rothia	10	5
genus	Rothia	10	0
genus	Ruminiclostridium	12	2
genus	Ruminococcus	36	1
genus	Ruthenibacterium	4	0
genus	Salmonella	4	0
genus	Sarcina	2	6
genus	Scardovia	3	0
genus	Schaalia	0	175
genus	Sedimentibacter	0	25
genus	Selenomonas	1	0
genus	Sellimonas	5	0
genus	Senegalimassilia	3	2
genus	Serratia	1	0
genus	Shigella	22	0
genus	Shuttleworthia	3	0
genus	Siccibacter	1	0
genus	Slackia	9	0
genus	Solobacterium	8	0
genus	Sphingobacterium	2	11
genus	Sphingomonas	1	0
genus	Sporobacter	3	1
genus	Sporosarcina	0	6
genus	Staphylococcus	16	0
genus	Stomatobaculum	3	0
genus	Streptococcus	34	1
genus	Subdoligranulum	17	47
genus	Succinatimonas	4	0
genus	Succiniclasticum	2	0
genus	Succinivibrio	6	0
genus	Sutterella	18	1
genus	Syntrophomonas	1	0
genus	T1-like viruses	1	0
genus	Tannerella	2	0
genus	Tepidanaerobacter	0	1
genus	Terrisporobacter	1	18
genus	Thermoanaerobacter	1	0
genus	Thermoclostridium	0	21
genus	Thermus	1	0
genus	Tindallia	0	1
genus	Treponema	2	0
genus	Trichococcus	1	0
genus	Tsukamurella	1	0
genus	Turicibacter	19	0
genus	Tyzzerella	5	0
genus	unclassified Ruminococcaceae	0	126
genus	Vagococcus	1	0
genus	Vampirovibrio	1	0
genus	Varibaculum	2	1
genus	Variovorax	3	0
genus	Veillonella	26	1
genus	Vibrio	3	0
genus	Victivallis	0	1
genus	Weissella	8	1
no rank	Bacillales Family XI. Incertae Sedis	0	21
no rank	Bacillales incertae sedis	0	15
no rank	Chlamydiae/Verrucomicrobia group	0	24
no rank	Clostridium beijerinckii NRRL B-598	1	0
no rank	Cyanobacteria/Melainabacteria group	0	98
no rank	FCB group	0	118
no rank	Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884	1	0
no rank	Moorella group	0	11
no rank	Terrabacteria group	0	30
no rank	unclassified Bacteroidales	0	34
no rank	unclassified Clostridiales	0	108
no rank	unclassified Firmicutes sensu stricto	0	90
no rank	unclassified Lachnospiraceae	0	90
no rank	unclassified Oscillatoriales	0	68
no rank	unclassified Peptostreptococcaceae	0	131
order	Acholeplasmatales	1	0
order	Actinomycetales	4	33
order	Agaricales	1	0
order	Anaerolineales	1	0
order	Anaeroplasmatales	1	0
order	Bacillales	0	60
order	Bacteroidales	14	55
order	Bacteroidetes Order II. Incertae sedis	0	34
order	Bifidobacteriales	3	3
order	Burkholderiales	0	12
order	Campylobacterales	1	1
order	Caulobacterales	1	0
order	Chlorobiales	0	37
order	Clostridiales	18	8
order	Coriobacteriales	1	25
order	Corynebacteriales	0	2
order	Cytophagales	1	46
order	Deferribacterales	0	2
order	Desulfovibrionales	2	14
order	Eggerthellales	1	6
order	Enterobacterales	5	4
order	Erysipelotrichales	1	0
order	Fibrobacterales	0	2
order	Flavobacteriales	6	11
order	Lactobacillales	6	2
order	Marinilabiliales	1	92
order	Methanobacteriales	0	3
order	Methylophilales	0	66
order	Micrococcales	1	23
order	Mycoplasmatales	0	32
order	Neisseriales	0	1
order	Nevskiales	0	9
order	Nostocales	0	1
order	Opitutales	4	0
order	Pasteurellales	0	1
order	Pseudomonadales	4	18
order	Puniceicoccales	0	2
order	Rhizobiales	0	1
order	Rhodocyclales	1	19
order	Selenomonadales	4	40
order	Sphingobacteriales	0	15
order	Sphingomonadales	1	25
order	Spirochaetales	1	0
order	Thermoanaerobacterales	0	59
order	Tissierellales	1	14
order	unclassified Tissierellia	0	45
order	Veillonellales	0	1
order	Verrucomicrobiales	2	6
order	Victivallales	0	1
order	Xanthomonadales	0	4
phylum	Acidobacteria	5	3
phylum	Actinobacteria	35	50
phylum	ascomycetes	1	0
phylum	Bacteroidota	25	67
phylum	basidiomycetes	1	0
phylum	Chlamydaeota	1	1
phylum	Cyanobacteria	7	3
phylum	Deferribacteres	1	2
phylum	Deinococcus-Thermus	0	10
phylum	Euryarchaeota	3	0
phylum	Firmicutes	6	61
phylum	Firmicutes	36	4
phylum	Fusobacteria	9	0
phylum	Gemmatimonadetes	0	40
phylum	Lentisphaerae	5	1
phylum	Proteobacteria	34	38
phylum	Spirochaetes	2	1
phylum	Synergistetes	5	0
phylum	Tenericutes	6	0
phylum	Thermomicrobia	1	41
phylum	Verrucomicrobia	17	13
species	[Bacteroides] coagulans	1	0
species	[Bacteroides] pectinophilus	3	0
species	[Clostridium] alkalicellulosi	0	7
species	[Clostridium] asparagiforme	2	0
species	[Clostridium] bolteae	6	0
species	[Clostridium] citroniae	1	0
species	[Clostridium] citroniae	2	0
species	[Clostridium] clostridioforme	4	0
species	[Clostridium] cocleatum	1	0
species	[Clostridium] colinum	1	0
species	[Clostridium] glycyrrhizinilyticum	2	0
species	[Clostridium] glycyrrhizinilyticum	2	0
species	[Clostridium] hiranonis	2	0
species	[Clostridium] hylemonae	2	0
species	[Clostridium] innocuum	5	0
species	[Clostridium] leptum	7	0
species	[Clostridium] methylpentosum	3	1
Species	[Clostridium] papyrosolvens	1	0
species	[Clostridium] scindens	5	0
species	[Clostridium] spiroforme	1	0
species	[Clostridium] spiroforme	2	0
species	[Clostridium] sporosphaeroides	0	1
species	[Clostridium] straminisolvens	1	0
species	[Clostridium] symbiosum	8	0
species	[Eubacterium] brachy	1	0
species	[Eubacterium] dolichum	1	0
species	[Eubacterium] eligens	7	0
species	[Eubacterium] hallii	9	0
species	[Eubacterium] infirmum	1	0
species	[Eubacterium] rectale	8	0
species	[Eubacterium] saphenum	1	0
species	[Eubacterium] siraeum	4	1
species	[Hallella] seregens	3	0
species	[Ruminococcus] gnavus	19	3
species	[Ruminococcus] torques	9	0
species	Abiotrophia adiacens	5	0
species	Abiotrophia defectiva	2	0
species	Abiotrophia sp.	3	0
species	Acetanaerobacterium elongatum	1	0
species	Acetivibrio ethanolgignens	1	0
species	Achromobacter georgiopolitanum	2	0
species	Acidaminococcus fermentans	2	0
species	Acidaminococcus intestini	5	1
species	Acidaminococcus sp.	3	0
species	Acidovorax sp. 121606	1	0
species	Acidovorax temperans	2	0
species	Acinetobacter baumannii	2	0
species	Acinetobacter calcoaceticus/baumannii complex	1	0
species	Acinetobacter junii	1	0
species	Acinetobacter soli	1	0
species	Acinetobacter sp.	2	0
species	Actinobacterium israeli	3	0
species	Actinobaculum massiliense	1	0
species	Actinomyces cardiffensis	3	0
species	Actinomyces dentalis	3	0
species	Actinomyces graevenitzii	5	0
species	Actinomyces hongkongensis	3	0
species	Actinomyces johnsonii	3	0
species	Actinomyces massiliensis	3	0
species	Actinomyces meyeri	2	0
species	Actinomyces naeslundii	4	0
species	Actinomyces oris	3	0
species	Actinomyces radicidentis	2	0
species	Actinomyces sp.	4	0
species	Actinomyces timonensis	3	0
species	Actinomyces turicensis	1	0
species	Actinomyces viscosus	2	0
species	Acuformis perennis	1	0
species	Adlercreutzia equolifaciens	3	4
species	Adlercreutzia sp.	1	0
species	Aerococcus christensenii	1	0
species	Aeromonas shigelloides	3	0
species	Agathobaculum butyriciproducens	4	0
species	Aggregatibacter actinomycetemcomitans	2	0
species	Aggregatibacter aphrophilus	1	0
species	Aggregatibacter segnis	2	0
species	AHU 1763	1	0
species	Akkermansia muciniphila	22	4
species	Akkermansia sp.	4	0
species	Alistipes finegoldii	4	1
species	Alistipes indistinctus	3	0
species	Alistipes inops	1	0
species	Alistipes obesi	2	0
species	Alistipes onderdonkii	6	0
species	Alistipes putredinis	4	0
species	Alistipes senegalensis Mishra et al. 2012	1	0
species	Alistipes shahii	2	0
species	Alistipes sp.	4	0
species	Alistipes sp. NML05A004	0	2
species	Alistipes timonensis	3	0
species	Alkaliphilus oremlandii	1	0
species	Allisonella histaminiformans	2	0
species	Allobaculum sp. Alo17	1	0
species	Alloprevotella rava	4	0
species	Alloprevotella tannerae	1	0
species	Alloscardovia omnicolens	2	0
species	Anaerobacillus macyae	1	0
species	Anaerococcus obesiensis	1	0
species	Anaerococcus octavius	1	0
species	Anaerococcus prevotii	1	0
species	Anaerococcus sp.	2	0
species	Anaerococcus vaginalis	2	1
species	Anaerocolumna aminovalerica	1	0
species	Anaerofustis stercorihominis	1	1
species	Anaeroglobus geminatus	2	0
species	Anaeroglobus sp.	1	0
species	Anaeromassilibacillus sp.	2	0
species	Anaerosporobacter mobilis	2	0
species	Anaerostipes caccae	4	2
species	Anaerostipes hadrus	5	1
species	Anaerostipes sp.	5	0
species	Anaerotruncus colihominis	3	6
species	Anaerotruncus sp.	2	0
species	Anaerovibrio sp.	1	0
species	Aquaspirillum dispar	1	0
species	AS 1.2274	0	1
species	ATCC 15483	1	0
species	ATCC 33028	2	0
species	ATCC 33257	1	0
species	ATCC 35469	3	0
species	ATCC 35539	1	0
species	ATCC 43994	2	0
species	ATCC 49918	3	0
species	ATCC 51230	1	0
species	ATCC 700337	1	0
species	ATCC 700632	2	0
species	ATCC 700666	1	0
species	ATCC BAA-1383	1	0
species	Atlantibacter subterranea (Shelobolina et al. 2005) Hata et al. 2016	1	0
species	Atopobium parvulum	6	0
species	Atopobium rimae	4	0
species	Atopobium sp.	2	0
species	Aureobacterium sp.	2	0
species	Bacillus coagulans	1	0
species	Bacillus fordii	1	0
species	Bacillus megaterium	2	0
species	Bacillus mesentericus	1	0
species	Bacillus okuhidensis	1	0
species	Bacillus pseudalcaliphilus	1	0
species	Bacillus simplex	1	0
species	Bacillus sp.	2	0
species	Bacillus subtilis group	0	4
species	Bacterium freundii	3	0
species	Bacteroides acidifaciens	0	1
species	Bacteroides barnesiae	3	0
species	Bacteroides caccae	3	4
species	Bacteroides caecigallinarum	1	0
species	Bacteroides caecimuris	2	0
species	Bacteroides cellulosilyticus	3	0
species	Bacteroides clarus	3	4
species	Bacteroides coprocola	4	2
species	Bacteroides coprophilus	4	0
species	Bacteroides dorei	3	6
species	Bacteroides eggerthii	3	1
species	Bacteroides faecichinchillae	2	0
species	Bacteroides faecis	3	1
species	Bacteroides finegoldii	3	3
species	Bacteroides fluxus	2	0
species	Bacteroides fragilis	23	1
species	Bacteroides gallinarum	2	1
species	Bacteroides graminisolvens	2	2
species	Bacteroides helcogenes	3	0
species	Bacteroides intestinalis	5	0
species	Bacteroides massiliensis	4	6
species	Bacteroides mediterraneensis	1	0
species	Bacteroides nordii	3	4
species	Bacteroides oleiciplenus	1	0
species	Bacteroides ovatus	9	1
species	Bacteroides paurosaccharolyticus	1	0
species	Bacteroides plebeius	4	2
species	Bacteroides pyogenes	4	0
species	Bacteroides reticulotermitis	2	3
species	Bacteroides rodentium	3	0
species	Bacteroides salanitronis	1	1
species	Bacteroides salyersiae	3	11
species	Bacteroides sartorii	1	0
species	Bacteroides sp.	7	0
species	Bacteroides sp. JCM 17101	2	1
species	Bacteroides stercoris	6	5
species	Bacteroides thetaiotaomicron	5	22
species	Bacteroides uniformis	13	1
species	Bacteroides vulgatus	12	5
species	Bacteroides xylanisolvens	4	3
species	Barnesiella intestinihominis	2	10
species	Barnesiella viscericola	1	0
species	beta proteobacterium KSP3	1	0
species	Bifidobacterium adolescentis	10	0
species	Bifidobacterium animalis	5	0
species	Bifidobacterium bifidum	8	0
species	Bifidobacterium breve	4	0
species	Bifidobacterium catenulatum	3	0
species	Bifidobacterium dentium	3	0
species	Bifidobacterium longum	13	5
species	Bifidobacterium pseudocatenulatum	8	0
species	Bifidobacterium pseudolongum	2	0
species	Bifidobacterium sp.	5	0
species	Bilophila sp.	1	0
species	Bilophila wadsworthia	3	0
species	Blautia coccoides	3	2
species	Blautia faecis	2	1
species	Blautia glucerasea	0	16
species	Blautia hansenii	0	11
species	Blautia hydrogenotrophica	3	4
species	Blautia luti	0	2
species	Blautia massiliensis	1	0
species	Blautia obeum	5	6
species	Blautia producta	4	0
species	Blautia schinkii	0	1
species	Blautia sp.	6	0
species	Blautia sp. YHC-4	0	2
species	Blautia wexlerae	1	3
species	Bradyrhizobium sp.	2	0
species	Brevundimonas diminuta	1	0
species	Bulleidia extructa	1	0
species	Butyricicoccus pullicaecorum	5	0
species	Butyricicoccus sp.	4	0
species	Butyricimonas faecihominis	0	1
species	Butyricimonas sp.	4	0
species	Butyricimonas sp. 214-4	0	4
species	Butyricimonas synergistica	2	0
species	Butyricimonas virosa	5	0
species	Butyrivibrio crossotus	1	0
species	Butyrivibrio fibrisolvens	1	0
species	Butyrivibrio proteoclasticus	0	6
species	Butyrivibrio sp.	1	0
species	Caloramator uzoniensis	0	1
species	Campylobacter concisus	2	0
species	Campylobacter concisus 13826	1	0
species	Campylobacter curvus	2	0
species	Campylobacter gracilis	1	0
species	Campylobacter jejuni	1	0
species	Campylobacter rectus	4	0
species	Campylobacter showae	1	0
species	Campylobacter sp.	2	0
species	Campylobacter ureolyticus	1	0
species	Candida	1	0
species	Candida albicans	1	0
species	Candidatus Bacteroides periocalifornicus	1	0
species	Candidatus Methanomethylophilus alvus	1	0
species	Candidatus Prevotella conceptionensis Fenollar et al. 2006	2	0
species	Capnocytophaga gingivalis	3	0
species	Capnocytophaga granulosa	2	0
species	Capnocytophaga leadbetteri	2	0
species	Capnocytophaga sp.	3	0
species	Capnocytophaga sputigena	2	0
species	Cardiobacterium hominis	1	0
species	Cardiobacterium sp.	3	0
species	Catabacter hongkongensis	3	0
species	Catenibacterium sp.	1	0
species	Catonella morbi	2	2
species	CAV	1	0
species	CCM 3540	1	0
species	CCUG 11878	6	0
species	CCUG 41967	3	0
species	CCUG 45998 A	1	0
species	CCUG 46149	3	0
species	CCUG 46150	1	0
species	CCUG 47503	1	0
species	CCUG 48363	2	0
species	CCUG 48460	1	0
species	CCUG 54362	1	0
species	CCUG 55896	1	0
species	CCUG 57945	2	0
species	CCUG 60371	2	0
species	CCUG 64422	1	0
species	Cetobacterium sp.	1	0
species	Chlamydia pneumoniae	1	0
species	Christensenella minuta	1	0
species	Christensenella sp.	1	0
species	Chryseobacterium sp.	2	0
species	CIP 108692	0	1
species	CIP 110771	2	0
species	Citrobacter farmeri	1	0
species	Citrobacter freundii complex	0	2
species	Citrobacter sp.	2	0
species	Citrobacter werkmanii	2	0
species	Citrobacter youngae	1	0
species	Cloacibacillus evryensis	1	0
species	Cloacibacillus porcorum	3	0
species	Cloacibacterium sp.	1	0
species	Clostridiaceae bacterium	1	0
species	Clostridiaceae bacterium JC118	1	0
species	Clostridiales bacterium 1_7_47FAA	2	0
species	Clostridiales bacterium L2-14	2	0
species	Clostridium botulinum	1	0
species	Clostridium butyricum	8	0
species	Clostridium celatum	1	0
species	Clostridium difficile	4	0
species	Clostridium disporicum	1	0
species	Clostridium neonatale Bouvet et al. 2014	1	0
species	Clostridium paraputrificum	1	0
species	Clostridium perfringens	7	0
species	Clostridium sp.	8	0
species	Clostridium sporogenes	1	0
species	Clostridium tertium	3	0
species	Clostridium ventriculi	1	0
species	Collinsella aerofaciens	6	11
species	Collinsella intestinalis	2	0
species	Collinsella sp.	5	0
species	Collinsella tanakaei	1	5
species	Comamonas testosteroni	1	0
species	Coprobacter fastidiosus	2	1
species	Coprobacter sp.	3	0
species	Coprococcus catus	5	0
species	Coprococcus comes	4	0
species	Coprococcus eutactus	6	0
species	Coprococcus sp.	4	0
species	Corynebacterium ammoniagenes	1	0
species	Corynebacterium durum	1	0
species	Corynebacterium sp.	4	0
species	CRBIP 24.179	3	0
species	Cronobacter sakazakii	3	0
species	Cronobacter turicensis	1	0
species	Cryptobacterium curtum	1	0
species	CSUR P3241	1	0
species	Cutibacterium sp.	2	0
species	Delftia acidovorans	2	0
species	Desulfomicrobium orale	1	0
species	Desulfovibrio desulfuricans	2	0
species	Desulfovibrio piger	2	10
species	Desulfovibrio sp.	3	0
species	Desulfovibrio vulgaris	1	0
species	Dialister invisus	4	0
species	Dialister pneumosintes	2	0
species	Dialister sp.	4	0
species	Dialister succinatiphilus	1	0
species	Dolosigranulum pigrum	2	0
species	Dorea formicigenerans	7	28
species	Dorea longicatena	4	22
species	Dorea sp.	5	0
species	DSM 102344	1	0
species	DSM 103034	3	0
species	DSM 1135	1	0
species	DSM 17055	3	0
species	DSM 19284	2	0
species	DSM 22761	1	0
species	DSM 26109	2	0
species	DSM 28989	2	0
species	DSM 7271	3	0
species	Dysgonomonas capnocytophagoides	2	0
species	Dysgonomonas sp.	1	0
species	Effusibacillus pohliae	1	0
species	Eggerthella lenta	8	3
species	Eggerthella sp.	1	0
species	Eggerthia catenaformis	2	0
species	Eikenella corrodens	2	0
species	Eisenbergiella sp.	4	0
species	Eisenbergiella tayi	2	1
species	Emergencia sp.	5	0
species	Enorma massiliensis	3	0
species	Enorma sp.	1	0
species	Enterobacter cancerogenus	1	0
species	Enterobacter cloacae	5	0
species	Enterobacter hormaechei	1	0
species	Enterobacter oryzaendophyticus	2	0
species	Enterobacter sp.	2	0
species	Enterococcus asini	1	0
species	Enterococcus avium	4	0
species	Enterococcus casseliflavus	2	0
species	Enterococcus cecorum	1	0
species	Enterococcus devriesei	2	0
species	Enterococcus dispar	1	0
species	Enterococcus durans	1	0
species	Enterococcus faecalis	8	0
species	Enterococcus faecium	5	0
species	Enterococcus gallinarum	5	0
species	Enterococcus hirae	2	0
species	Enterococcus mundtii	1	0
species	Enterococcus pseudoavium	1	0
species	Enterococcus raffinosus	2	0
species	Enterococcus sp.	1	0
species	Enterococcus thailandicus	1	0
species	Erysipelatoclostridium ramosum	5	0
species	Escherichia albertii	2	0
species	Escherichia coli	21	1
species	Escherichia sp.	3	0
species	Eubacterium coprostanoligenes	2	0
species	Eubacterium desmolans	2	0
species	Eubacterium limosum	3	0
species	Eubacterium oxidoreducens	1	0
species	Eubacterium oxidoreducens	4	0
species	Eubacterium ramulus	1	1
species	Eubacterium sp.	6	0
species	Eubacterium uniforme	2	0
species	Eubacterium ventriosum	2	0
species	Eubacterium xylanophilum	2	0
species	Faecalibacterium prausnitzii	23	9
species	Faecalibacterium sp.	6	0
species	Faecalibacterium sp. canine oral taxon 147	0	1
species	Faecalicoccus pleomorphus	2	0
species	Faecalitalea cylindroides	3	0
species	Filifactor alocis	1	0
species	Finegoldia magna	1	0
species	Flavibacterium sp.	1	0
species	Flavonifractor plautii	4	0
species	Flavonifractor sp.	5	0
species	Fournierella sp.	4	0
species	Francisella tularensis	6	0
species	Fusicatenibacter saccharivorans	1	0
species	Fusobacterium mortiferum	1	0
species	Fusobacterium nucleatum	5	0
species	Fusobacterium periodonticum	1	0
species	Fusobacterium sp.	5	0
species	Fusobacterium ulcerans	1	0
species	Fusobacterium varium	2	0
species	Gardnerella vaginalis	3	0
species	Gemella asaccharolytica	1	0
species	Gemella bergeri	1	0
species	Gemella haemolysans	2	0
species	Gemella morbillorum	4	0
species	Gemella sp.	2	0
species	Gemmiger formicilis	2	0
species	Gordonibacter pamelaeae	5	2
species	Gordonibacter sp.	1	0
species	Gordonibacter urolithinfaciens	4	0
species	Granulicatella elegans	4	0
species	Granulicatella sp.	3	0
species	Haemophilus haemolyticus	1	0
species	Haemophilus influenzae	6	0
species	Haemophilus influenzae 10810	1	0
species	Haemophilus parahaemolyticus	1	0
species	Haemophilus parainfluenzae	9	1
species	Haemophilus paraphrohaemolyticus	4	0
species	Haemophilus pittmaniae	3	0
species	Haemophilus quentini Olsen et al. 2005	1	0
species	Haemophilus sp.	2	0
species	Haemophilus sputorum	1	0
species	Hafnia alvei	2	0
species	Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989	2	0
species	Helicobacter rodentium	2	0
species	Hespellia porcina	0	1
species	Holdemanella biformis	3	0
species	Holdemanella sp.	4	0
species	Holdemania filiformis	2	0
species	Holdemania sp.	3	0
species	Howardella ureilytica	0	1
species	Hungatella hathewayi	5	0
species	IMSNU 11154	1	0
species	Intestinibacter bartlettii	3	0
species	Intestinimonas butyriciproducens	7	0
species	Intestinimonas sp.	2	0
species	Isoptericola variabilis	3	0
species	JCM 1093	3	0
species	JCM 5829	1	0
species	Kingella denitrificans	2	0
species	Kingella oralis	2	0
species	Klebsiella aerogenes	3	0
species	Klebsiella oxytoca	4	0
species	Klebsiella pneumoniae aerogenes	9	0
species	Klebsiella sp.	1	0
species	Kluyvera ascorbata	2	0
species	Kluyvera cryocrescens	1	0
species	Kluyvera georgiana	2	0
species	Kluyvera intermedia	2	0
species	Kocuria kristinae	1	0
species	Kytococcus sedentarius	5	0
species	Lachnoanaerobaculum saburreum	3	0
species	Lachnoanaerobaculum sp.	3	0
species	Lachnoanaerobaculum umeaense	5	0
species	Lachnoclostridium sp.	1	0
species	Lachnospira pectinoschiza	3	3
species	Lachnospira sp.	5	0
species	Lachnospiraceae bacterium oral taxon 082	1	0
species	Lactobacillus acidophilus	4	0
species	Lactobacillus agilis	2	0
species	Lactobacillus amylolyticus	1	0
species	Lactobacillus animalis	1	0
species	Lactobacillus antri	2	0
species	Lactobacillus brevis	2	0
species	Lactobacillus crispatus	3	0
species	Lactobacillus curvatus	4	0
species	Lactobacillus delbrueckii	2	0
species	Lactobacillus equi	2	0
species	Lactobacillus fermentum	8	0
species	Lactobacillus frumenti	2	0
species	Lactobacillus gallinarum	1	0
species	Lactobacillus gasseri	6	0
species	Lactobacillus ingluviei	1	0
species	Lactobacillus intestinalis	2	0
species	Lactobacillus jensenii	2	0
species	Lactobacillus johnsonii	2	0
species	Lactobacillus kalixensis	1	0
species	Lactobacillus kitasatonis	1	0
species	Lactobacillus mucosae	5	0
species	Lactobacillus murinus	1	0
species	Lactobacillus oris	2	0
species	Lactobacillus paracasei	3	0
species	Lactobacillus reuteri	6	0
species	Lactobacillus rhamnosus	2	0
species	Lactobacillus rogosae	1	0
species	Lactobacillus ruminis	3	0
species	Lactobacillus saerimneri	1	0
species	Lactobacillus sakei	3	0
species	Lactobacillus salivarius	7	0
species	Lactobacillus saniviri	2	0
species	Lactobacillus sp.	3	0
species	Lactobacillus vaginalis	4	0
species	Lactobacillus zeae	1	0
species	Lactococcus garvieae	1	0
species	Lactococcus lactis	4	0
species	Lactococcus piscium	1	0
species	Lactococcus sp.	2	0
species	Lactonifactor longoviformis	4	1
species	Laribacter hongkongensis	1	0
species	Lautropia mirabilis	2	0
species	Leadbetterella byssophila	3	0
species	Leclercia adecarboxylata	1	0
species	Leclercia sp.	1	0
species	Lelliottia amnigena	2	0
species	Leminorella grimontii	1	0
species	Leptotrichia hofstadii	1	0
species	Leptotrichia sp.	5	0
species	Leptotrichia trevisanii	3	0
species	Leptotrichia wadei	1	0
species	Leucobacter sp.	1	0
species	Leuconostoc citreum	5	0
species	Leuconostoc lactis	2	0
species	Leuconostoc mesenteroides	1	0
species	LMG:7884	1	0
species	LMG:9496	3	0
species	Lysinibacillus sphaericus	1	0
species	Marvinbryantia sp.	2	0
species	Massilioclostridium sp.	2	0
species	Massiliomicrobiota timonensis	1	0
species	Megamonas hypermegale	3	0
species	Megamonas rupellensis	3	0
species	Megamonas sp.	2	0
species	Megasphaera elsdenii	1	0
species	Megasphaera micronuciformis	4	0
species	Megasphaera sp.	4	0
species	Meiothermus silvanus	1	0
species	Merdibacter massiliensis	1	0
species	Methanobrevibacter smithii	9	0
species	Methanobrevibacter sp.	2	0
species	Methanomassiliicoccus luminyensis	1	0
species	Methanosphaera cuniculi	2	0
species	Methanosphaera stadtmanae	1	0
species	Micrococcus luteus	1	0
species	Micromonas sp. (in: Bacteria)	4	0
species	Mitsuokella jalaludinii	1	0
species	Mitsuokella sp.	2	0
species	Mogibacterium sp.	4	0
species	Moraxella catarrhalis	1	0
species	Moraxella osloensis	2	0
species	Morganella morganii	2	0
species	Mucispirillum schaedleri	1	0
species	Murimonas intestini	2	0
species	Mycoplasma fermentans	2	0
species	Mycoplasma hominis	2	0
species	NBRC 15891	4	0
species	Negativicoccus massiliensis Togo et al. 2016	2	0
species	Negativicoccus succinicivorans	2	0
species	Neglecta sp.	3	0
species	Neisseria bacilliformis	2	0
species	Neisseria cinerea	2	0
species	Neisseria flavescens	3	0
species	Neisseria meningitidis	3	0
species	Neisseria sicca	2	0
species	Neisseria sp.	2	0
species	Neisseria subflava	2	0
species	Nocardioides dubius	5	0
species	Odoribacter laneus	2	2
species	Odoribacter sp.	4	0
species	Odoribacter splanchnicus	5	4
species	Olsenella profusa	3	0
species	Olsenella sp.	4	0
species	Olsenella uli	3	0
species	Oribacterium sinus	2	1
species	Oribacterium sp.	5	0
species	Oscillibacter ruminantium	1	0
species	Oscillibacter sp.	5	0
species	Oscillibacter valericigenes	2	3
species	Ottowia sp.	2	0
species	Oxalobacter formigenes	4	0
species	Oxalobacter sp.	2	0
species	Paenibacillus amylolyticus	1	0
species	Paenibacillus sp.	1	0
species	Paeniclostridium sordellii	1	0
species	Pantoea ananatis	1	0
species	Pantoea calida	2	0
species	Papillibacter cinnamivorans	0	1
species	Parabacteroides chinchillae	1	0
species	Parabacteroides distasonis	10	1
species	Parabacteroides faecis	0	2
species	Parabacteroides goldsteinii	2	3
species	Parabacteroides gordonii	3	0
species	Parabacteroides johnsonii	3	4
species	Parabacteroides merdae	5	7
species	Parabacteroides sp.	4	0
species	Paraburkholderia sp.	2	0
species	Paraclostridium bifermentans	2	0
species	Paraprevotella clara	2	2
species	Paraprevotella sp.	4	0
species	Paraprevotella xylaniphila	1	0
species	Parascardovia denticolens	2	0
species	Parasutterella excrementihominis	1	1
species	Parasutterella sp.	3	0
species	Parvimonas micra	2	0
species	Pediococcus acidilactici	3	0
species	Pediococcus pentosaceus	2	0
species	Pelotomaculum isophthalicum Qiu et al. 2006	0	2
species	Peptococcus niger	1	1
species	Peptoniphilus lacrimalis	0	1
species	Peptoniphilus rhinitidis	1	0
species	Peptoniphilus sp.	5	0
species	Peptostreptococcus anaerobius	3	0
species	Peptostreptococcus sp.	4	0
species	Peptostreptococcus stomatis	3	0
species	Phascolarctobacterium faecium	2	3
species	Phascolarctobacterium sp.	4	0
species	Phascolarctobacterium succinatutens	0	10
species	Phocaeicola abscessus	1	0
species	Photobacterium damselae	1	0
species	Porphyromonas asaccharolytica	1	0
species	Porphyromonas bennonis	2	1
species	Porphyromonas cangingivalis	1	0
species	Porphyromonas catoniae	4	0
species	Porphyromonas endodontalis	3	0
species	Porphyromonas somerae	4	0
species	Porphyromonas sp.	4	0
species	Porphyromonas uenonis	2	0
species	Prevotella albensis	1	0
species	Prevotella amnii	2	0
species	Prevotella aurantiaca	2	0
species	Prevotella baroniae	2	0
species	Prevotella bergensis	1	0
species	Prevotella bivia	3	0
species	Prevotella buccae	2	0
species	Prevotella buccalis	2	0
species	Prevotella colorans	1	0
species	Prevotella copri	17	1
species	Prevotella corporis	2	0
species	Prevotella dentalis	1	0
species	Prevotella denticola	3	0
species	Prevotella disiens	0	1
species	Prevotella histicola	6	0
species	Prevotella intermedia	2	0
species	Prevotella loescheii	2	0
species	Prevotella maculosa	3	0
species	Prevotella marshii	2	0
species	Prevotella melaninogenica	2	0
species	Prevotella micans	4	0
species	Prevotella multiformis	1	0
species	Prevotella multisaccharivorax	2	0
species	Prevotella nanceiensis	2	0
species	Prevotella nigrescens	3	0
species	Prevotella oralis	5	0
species	Prevotella oris	2	0
species	Prevotella oulorum	2	0
species	Prevotella pallens	2	0
species	Prevotella paludivivens	1	0
species	Prevotella pleuritidis	2	0
species	Prevotella saccharolytica	3	0
species	Prevotella salivae	3	0
species	Prevotella shahii	2	0
species	Prevotella sp.	5	0
species	Prevotella stercorea	3	0
species	Prevotella timonensis	1	0
species	Prevotella veroralis	2	0
species	Propionibacterium sp.	2	0
species	Proteus hauseri	2	0
species	Proteus mirabilis	2	0
species	Proteus vulgaris	3	0
species	Pseudoflavonifractor capillosus	6	3
species	Pseudoflavonifractor sp.	2	0
species	Pseudomonas aeruginosa	5	0
species	Pseudomonas aeruginosa group	3	0
species	Pseudomonas extremaustralis	2	0
species	Pseudomonas fragi	1	0
species	Pseudomonas putida	1	0
species	Pseudopropionibacterium propionicum	1	0
species	Pseudopropionibacterium sp.	2	0
species	Pseudoramibacter alactolyticus	3	0
species	Pseudoramibacter sp.	1	0
species	Psychrobacillus sp.	1	0
species	Pyramidobacter piscolens	2	0
species	Pyramidobacter sp.	1	0
species	Raoultella ornithinolytica	2	0
species	Raoultella sp.	3	0
species	Rhizobium pusense	1	0
species	Rikenella microfusus	3	0
species	Robinsoniella peoriensis	1	0
species	Robinsoniella sp.	1	0
species	Romboutsia ilealis	1	0
species	Romboutsia sp.	4	0
species	Roseburia faecis	3	27
species	Roseburia hominis	4	0
species	Roseburia intestinalis	4	1
species	Roseburia inulinivorans	8	7
species	Roseburia sp.	5	0
species	Rothia aeria	4	0
species	Rothia dentocariosa	5	0
species	Rothia mucilaginosa	6	0
species	Rothia sp.	3	0
species	Ruminiclostridium sp.	5	0
species	Ruminococcaceae bacterium D16	4	0
species	Ruminococcus albus	1	1
species	Ruminococcus bicirculans	1	0
species	Ruminococcus bromii	3	1
species	Ruminococcus callidus	2	0
species	Ruminococcus champanellensis	1	0
species	Ruminococcus flavefaciens	1	0
species	Ruminococcus gauvreauii	4	0
species	Ruminococcus lactaris	2	0
species	Ruminococcus sp.	8	0
species	Ruthenibacterium lactatiformans	1	0
species	Salmonella enterica	2	0
species	Sanguibacter keddieii	3	0
species	Sanguibacteroides justesenii	3	0
species	Scardovia inopinata	3	0
species	Scardovia wiggsiae	3	0
species	Sedimentibacter hydroxybenzoicus	0	3
species	Selenomonas artemidis	3	0
species	Selenomonas flueggei	1	0
species	Selenomonas noxia	2	0
species	Selenomonas sputigena	3	0
species	Serratia marcescens	1	0
species	Shigella flexneri	1	0
species	Shigella sonnei	1	0
species	Shuttleworthia satelles	3	0
species	Siccibacter sp.	1	0
species	Slackia exigua	3	0
species	Slackia piriformis	1	2
species	Slackia sp.	1	0
species	Sneathia sanguinegens	1	0
species	Solobacterium moorei	2	0
species	Sphingobacterium sp.	1	0
species	spotted fever group	0	17
species	Staphylococcus aureus	6	0
species	Staphylococcus capitis	2	0
species	Staphylococcus epidermidis	2	0
species	Staphylococcus pasteuri	2	0
species	Staphylococcus sciuri	1	0
species	Staphylococcus xylosus	3	0
species	Stenotrophomonas maltophilia	1	0
species	Stenotrophomonas maltophilia complex	2	0
species	Stomatobaculum longum	3	0
species	Streptococcus agalactiae	1	0
species	Streptococcus anginosus	4	0
species	Streptococcus anginosus group	0	1
species	Streptococcus australis	3	0
species	Streptococcus constellatus	2	0
species	Streptococcus cristatus	3	0
species	Streptococcus dysgalactiae	1	0
species	Streptococcus G418	7	0
species	Streptococcus gallolyticus	4	0
species	Streptococcus gordonii	3	0
species	Streptococcus infantarius	2	0
species	Streptococcus infantis	3	0
species	Streptococcus intermedius	2	0
species	Streptococcus massiliensis	2	0
species	Streptococcus mitis	6	0
species	Streptococcus mutans	2	0
species	Streptococcus oralis	3	0
species	Streptococcus oralis	3	0
species	Streptococcus orisratti	1	0
species	Streptococcus parauberis	1	0
species	Streptococcus peroris	2	0
species	Streptococcus pneumoniae	3	0
species	Streptococcus pseudopneumoniae	3	1
species	Streptococcus pyogenes	2	0
species	Streptococcus sanguinis	4	0
species	Streptococcus sobrinus	2	0
species	Streptococcus thermophilus	5	0
species	Streptococcus vestibularis	5	0
species	Streptomyces albus	1	0
species	Streptomyces cattleya	2	0
species	Subdoligranulum sp.	4	0
species	Subdoligranulum variabile	2	11
species	Succinatimonas hippei	1	0
species	Succinivibrio sp.	4	0
species	Sutterella sp.	6	0
species	Sutterella stercoricanis	1	4
species	Sutterella wadsworthensis	7	2
species	Synergistes jonesii	1	0
species	Syntrophomonas sp.	1	0
species	Tannerella forsythia	2	0
species	Tannerella sp.	2	0
species	Tepidanaerobacter syntrophicus	0	1
species	Terrisporobacter sp.	2	0
species	Tetragenococcus doogicus	0	3
species	Treponema lecithinolyticum	2	0
species	Treponema maltophilum	1	0
species	Treponema socranskii	1	0
species	Trichococcus sp.	1	0
species	Trueperella pyogenes	2	0
species	Turicibacter sanguinis	2	0
species	Tyzzerella nexilis	4	0
species	Tyzzerella sp.	4	0
species	Vagococcus teuberi	1	0
species	Varibaculum sp.	2	0
species	Variovorax sp.	3	0
species	Veillonella atypica	4	0
species	Veillonella dispar	3	0
species	Veillonella montpellierensis	1	0
species	Veillonella parvula	4	0
species	Veillonella rogosae	6	0
species	Veillonella sp.	6	0
species	Veillonella tobetsuensis	4	0
species	Victivallis vadensis	2	0
species	Weissella hellenica	1	0
species	Weissella paramesenteroides	1	0
species	Xylanimonas cellulosilytica	3	0
species	Yersinia ruckeri	1	0
species	Yokenella regensburgei	1	0
strain	Anaerobutyricum hallii ATCC 27751	1	0
strain	Clostridium beijerinckii NCIMB 8052	1	0
strain	Klebsiella pneumoniae 1162281	1	0
strain	Porphyromonas gingivalis str. ATCC 33277	1	0
strain	Saccharomyces cerevisiae	1	0
strain	Streptococcus oralis subsp. tigurinus	2	0
subclass	Oscillatoriophycideae	0	40
suborder	Coriobacterineae	1	0
suborder	Cystobacterineae	0	85
subphylum	delta/epsilon subdivisions	0	13
subspecies	Bifidobacterium animalis subsp. lactis	1	0
subspecies	Bifidobacterium infantis	1	0
superkingdom	Eucarya	0	4
superphylum	Bacteroidetes/Chlorobi group	0	74
tribe	Rickettsieae	0	67

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