Interactions with Corynebacterium

Data Source:

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There are several ways of doing association. At the bottom is trying linear regression on the percentiles. Doing linear regression of actual counts produce few results. For a blog post describing the process see Bacteria interacting with bacteria.

Above this is the association using Kalthrop-Moldrup Limits (Patent Pending) to determine non parametric association between High Levels and Low Levels. High levels may cause changes in other bacteria (for example, due to amount of natural antibiotics released) but no effect with low levels. Similarly the reverse.

Chi2 is truncated to 10000. Example Expected Count was 13.4, observed was 540


Calculated from Fy(y)=a + (slope) Fx(x). F(x) are custom monotonic functions. See this post for technical notes on computation

RankBacteriaSlope
Relative Impact
Percentage ExplainedImpact
family Brevibacteriaceae 45.9% 23.4% 10.7%
family Campylobacteraceae 42.2% 19.6% 8.3%
family Clostridiales Family XI. Incertae Sedis 68.2% 46.2% 31.5%
family Corynebacteriaceae 99.8% 99.2% 99%
family Dermabacteraceae 53.8% 34.4% 18.5%
family Peptoniphilaceae 54.5% 33% 18%
genus Aerosphaera 74.2% 30.3% 22.5%
genus Anaerococcus 65.4% 42.9% 28.1%
genus Campylobacter 44.5% 19.7% 8.7%
genus Dermabacter 75% 47.4% 35.5%
genus Fastidiosipila 55.8% 46.9% 26.2%
genus Finegoldia 68.1% 46.1% 31.4%
genus Gallicola 48.2% 19.2% 9.3%
genus Gardnerella 56.7% 26.4% 14.9%
genus Mobiluncus 44.6% 20.5% 9.1%
genus Peptoniphilus 46.2% 22.8% 10.5%
genus Peptostreptococcus 43.9% 19.2% 8.4%
genus Propionibacterium 44.7% 23.3% 10.4%
genus Varibaculum 44.6% 20.9% 9.3%
kingdom Mobiluncus/Falcivibrio group 45% 20.9% 9.4%
no rank Lactobacillales incertae sedis 74.2% 30.3% 22.5%
no rank unclassified Corynebacterium 87.2% 57.8% 50.4%
no rank unclassified Negativicoccus 54.2% 20.3% 11%
no rank unclassified Peptoniphilus 33% 26.7% 8.8%
order Actinomycetales 55.7% 31.6% 17.6%
order Campylobacterales 42.6% 19.6% 8.3%
order Mycobacteriales 97.7% 93.1% 91%
order Tissierellales 54.9% 32.8% 18%
phylum Campylobacterota 43.1% 20.3% 8.8%
species Actinomyces sp. 2002-2301122 53.1% 18.8% 10%
species Aerosphaera taetra 74.2% 30.3% 22.5%
species Anaerococcus hydrogenalis 47.9% 22.7% 10.9%
species Anaerococcus murdochii 51.8% 27% 14%
species Anaerococcus octavius 64.4% 32.3% 20.8%
species Anaerococcus provencensis 65.7% 29.5% 19.4%
species Anaerococcus sp. 8405254 59% 18% 10.6%
species Anaerococcus sp. S8 87-3 54.7% 22.6% 12.4%
species Anaerococcus sp. S8 F2 61.9% 28.4% 17.6%
species Anaerococcus vaginalis 53.6% 27.8% 14.9%
species Brevibacterium paucivorans 62% 25.6% 15.9%
species Campylobacter hominis 44.9% 20.9% 9.4%
species Corynebacterium canis 55.2% 18.9% 10.4%
species Corynebacterium diphtheriae 70.4% 44% 31%
species Corynebacterium epidermidicanis 81.4% 43.2% 35.2%
species Corynebacterium mastitidis 79.9% 48.8% 39%
species Corynebacterium sp. 713182/2012 72.5% 40% 29%
species Corynebacterium sp. jw37 85.9% 53.6% 46%
species Corynebacterium spheniscorum 85.4% 55.8% 47.7%
species Dermabacter hominis 74.3% 49.6% 36.9%
species Dialister pneumosintes 58.2% 39.4% 22.9%
species Dialister propionicifaciens 46.1% 19.6% 9%
species Facklamia languida 86.6% 21.1% 18.3%
species Finegoldia magna 67.4% 44.1% 29.8%
species Finegoldia sp. S9 AA1-5 75.8% 56.8% 43.1%
species Hoylesella buccalis 47.5% 22.1% 10.5%
species Lactobacillus crispatus 47.2% 18.5% 8.7%
species Mobiluncus curtisii 53.5% 27.7% 14.8%
species Negativicoccus sp. S5-A15 54.2% 20.3% 11%
species Peptoniphilus lacrimalis 50.1% 24.2% 12.1%
species Peptoniphilus sp. 1-14 53.7% 25.9% 13.9%
species Peptoniphilus sp. 2002-38328 45.3% 19.8% 9%
species Peptoniphilus sp. gpac018A 54.8% 25.3% 13.9%
species Peptoniphilus sp. oral taxon 375 51.2% 19.3% 9.9%
species Peptostreptococcus anaerobius 50.6% 25.3% 12.8%
species Porphyromonas asaccharolytica 45.7% 22.8% 10.4%
species Porphyromonas bennonis 56.4% 30.5% 17.2%
species Porphyromonas uenonis 45.3% 19.7% 8.9%
species Prevotella disiens 57.8% 31.5% 18.2%
species Schaalia radingae 65.9% 24.4% 16.1%
species Schaalia turicensis 46.1% 24.2% 11.2%
species Varibaculum cambriense 46.7% 25.1% 11.7%

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