Interactions with Porphyromonas bennonis

Data Source:

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There are several ways of doing association. At the bottom is trying linear regression on the percentiles. Doing linear regression of actual counts produce few results. For a blog post describing the process see Bacteria interacting with bacteria.

Above this is the association using Kalthrop-Moldrup Limits (Patent Pending) to determine non parametric association between High Levels and Low Levels. High levels may cause changes in other bacteria (for example, due to amount of natural antibiotics released) but no effect with low levels. Similarly the reverse.

Chi2 is truncated to 10000. Example Expected Count was 13.4, observed was 540


Calculated from Fy(y)=a + (slope) Fx(x). F(x) are custom monotonic functions. See this post for technical notes on computation

RankBacteriaSlope
Relative Impact
Percentage ExplainedImpact
class Tissierellia 43% 19.3% 8.3%
family Actinomycetaceae 50.3% 17.7% 8.9%
family Campylobacteraceae 56% 33.5% 18.8%
family Clostridiales Family XI. Incertae Sedis 58.1% 46% 26.7%
family Corynebacteriaceae 52.3% 20.9% 10.9%
family Dermabacteraceae 50% 19.5% 9.7%
family Peptoniphilaceae 57% 36.8% 21%
genus Anaerococcus 65.5% 33.1% 21.7%
genus Campylobacter 55.8% 33.2% 18.5%
genus Corynebacterium 54.1% 24.1% 13%
genus Finegoldia 62.1% 16.4% 10.2%
genus Mobiluncus 57.4% 23.6% 13.6%
genus Murdochiella 50.6% 38.4% 19.5%
genus Negativicoccus 42.5% 21.2% 9%
genus Varibaculum 51.5% 17% 8.7%
kingdom Mobiluncus/Falcivibrio group 50.1% 26.6% 13.3%
no rank unclassified Murdochiella 62% 37.8% 23.4%
no rank unclassified Negativicoccus 48.5% 20.9% 10.2%
no rank unclassified Peptoniphilus 29% 35% 10.2%
no rank unclassified Porphyromonas 40.7% 28.2% 11.5%
order Campylobacterales 56.7% 32.6% 18.5%
order Tissierellales 56.5% 35.2% 19.9%
phylum Campylobacterota 56% 32.8% 18.4%
species Anaerococcus provencensis 62.2% 34.8% 21.6%
species Anaerococcus sp. S8 87-3 56.8% 33% 18.8%
species Anaerococcus vaginalis 57.8% 34% 19.7%
species Campylobacter hominis 45.7% 21.6% 9.9%
species Corynebacterium canis 55.8% 20.8% 11.6%
species Dialister propionicifaciens 54.1% 16.2% 8.8%
species Finegoldia magna 65.3% 24.3% 15.9%
species Hoylesella buccalis 62.8% 36.7% 23.1%
species Hoylesella timonensis 46% 18.3% 8.4%
species Murdochiella sp. S9 PR-10 62% 37.8% 23.4%
species Negativicoccus sp. S5-A15 48.5% 20.9% 10.2%
species Peptococcus sp. S9 Pr-12 54.9% 19.4% 10.6%
species Peptoniphilus lacrimalis 59.1% 27.2% 16.1%
species Peptoniphilus sp. 1-14 50.2% 28.5% 14.3%
species Peptoniphilus sp. BV3AC2 68.2% 44.3% 30.2%
species Peptoniphilus sp. DNF00192 89.6% 20.2% 18.1%
species Peptoniphilus sp. gpac018A 74.8% 43.7% 32.6%
species Peptoniphilus sp. oral taxon 375 75.2% 37.3% 28%
species Peptoniphilus sp. S4-A10 53.2% 28.1% 14.9%
species Porphyromonas asaccharolytica 61.9% 39.8% 24.7%
species Porphyromonas somerae 47.2% 17.7% 8.3%
species Porphyromonas sp. 2024b 57.8% 34.9% 20.2%
species Schaalia turicensis 50.6% 28.3% 14.3%
species Varibaculum sp. CCUG 45114 55.5% 29.7% 16.5%

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