This is estimated from numbers produced - numbers consumed.
This is based on data available using Enzymes produced by the bacteria. Some probiotics may have no information. Numbers are based on being present in probiotics and not CFU declared to be in the probiotic(often missing on labels). The intent is to help identify possible causes for a particular response to a probiotic.
| Compound Name | Estimate | Known As |
|---|---|---|
| (2E,4E)-2,4-Dienoyl-CoA | 1 | trans,trans-2,3,4,5-Tetradehydroacyl-CoA |
| (2E,4Z)-2,4-Dienoyl-CoA | 1 | |
| (2'R)-2'-Hydroxyphytoceramide | 1 | |
| (2R)-3-Sulfolactate | 1 | (R)-3-Sulfolactate |
| (2R,3S)-2-Alkyl-3-hydroxyalkanoate | -1 | |
| (2R,3S)-3-Isopropylmalate | -2 | 3-Isopropylmalate 3-Carboxy-2-hydroxy-4-methylpentanoate 2-D-threo-Hydroxy-3-carboxy-isocaproate |
| (2S)-2-Isopropyl-3-oxosuccinate | 0 | 3-Carboxy-4-methyl-2-oxopentanoate 2-Oxo-4-methyl-3-carboxypentanoate |
| (2S,3R)-3-Hydroxybutane-1,2,3-tricarboxylate | -1 | Methylisocitrate Methylisocitric acid |
| (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate | 2 | (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate HTPA |
| (3,4-Dihydroxybenzoyl)adenylate | 0 | |
| (3E)-3-Enoyl-CoA | 1 | trans-3-Enoyl-CoA |
| (3R)-3-Hydroxyacyl-[acyl-carrier protein] | -2 | (R)-3-Hydroxyacyl-[acyl-carrier protein] |
| (3S)-3,6-Diaminohexanoate | 0 | L-beta-Lysine |
| (3S)-3-Hydroxyacyl-CoA | -2 | (S)-3-Hydroxyacyl-CoA |
| (3S)-6-Acetamido-3-aminohexanoate | 1 | |
| (8S)-3',8-Cyclo-7,8-dihydroguanosine 5'-triphosphate | 0 | |
| (L-Cysteinyl)adenylate | 0 | L-Cysteinyl-AMP |
| (R)-1-Aminopropan-2-ol | 0 | (R)-1-Amino-2-propanol |
| (R)-2,3-Dihydroxy-3-methylbutanoate | -1 | (R)-2,3-Dihydroxy-isovalerate (R)-2,3-Dihydroxy-isovaleric acid (2R)-2,3-Dihydroxy-3-methylbutanoate |
| (R)-2-Hydroxyacid | 1 | (R)-2-Hydroxycarboxylate (R)-2-Hydroxycarboxylic acid |
| (R)-2-Hydroxyglutarate | -1 | (R)-Hydroxyglutarate |
| (R)-2-Methylmalate | -1 | (R)-2-Methylmalic acid (R)-Citramalate (R)-Citramalic acid (R)-alpha-Hydroxypyrotartaric acid D-Citramalate D-Citramalic acid D-alpha-Hydroxypyrotartaric acid (2R)-2-Hydroxy-2-methylbutanedioate |
| (R)-3-Amino-2-methylpropanoate | -1 | (R)-3-Aminoisobutyrate D-3-Aminoisobutanoate (R)-beta-Aminoisobutyrate |
| (R)-3-Hydroxybutanoate | -1 | (R)-3-Hydroxybutanoic acid (R)-3-Hydroxybutyric acid D-beta-Hydroxybutyric acid |
| (R)-3-Hydroxybutanoyl-CoA | -1 | (3R)-3-Hydroxybutanoyl-CoA |
| (R)-4'-Phosphopantothenoyl-L-cysteine | 0 | N-[(R)-4'-Phosphopantothenoyl]-L-cysteine |
| (R)-Lactate | -3 | D-Lactate D-Lactic acid D-2-Hydroxypropanoic acid D-2-Hydroxypropionic acid |
| (R)-Lipoate | -1 | (R)-Lipoic acid (R)-(+)-Lipoate R-(+)-Lipoic acid 1,2-Dithiolane-3R-pentanoic acid |
| (R)-Methylmalonyl-CoA | -1 | L-Methylmalonyl-CoA |
| (R)-Mevalonate | -1 | Mevalonic acid 3,5-Dihydroxy-3-methylvaleric acid |
| (R)-Pantoate | -2 | Pantoate Pantoic acid |
| (R)-S-Lactoylglutathione | -1 | S-D-Lactoylglutathione |
| (S)-1-Pyrroline-5-carboxylate | 2 | L-1-Pyrroline-5-carboxylate 1-Pyrroline-5-carboxylate |
| (S)-2-Acetolactate | 1 | (S)-2-Hydroxy-2-methyl-3-oxobutanoate (2S)-2-Hydroxy-2-methyl-3-oxobutanoate |
| (S)-2-Haloacid | -1 | |
| (S)-3-Hydroxy-3-methylglutaryl-CoA | 0 | Hydroxymethylglutaryl-CoA Hydroxymethylglutaroyl coenzyme A HMG-CoA 3-Hydroxy-3-methylglutaryl-CoA |
| (S)-3-Hydroxybutanoyl-CoA | -1 | (S)-3-Hydroxybutyryl-CoA |
| (S)-4-Amino-5-oxopentanoate | -2 | L-Glutamate 1-semialdehyde |
| (S)-Dihydroorotate | -2 | (S)-4,5-Dihydroorotate L-Dihydroorotate L-Dihydroorotic acid Dihydro-L-orotic acid |
| (S)-Lactaldehyde | 0 | L-Lactaldehyde L-2-Hydroxypropionaldehyde |
| (S)-Lactate | -1 | L-Lactate L-Lactic acid |
| (S)-Malate | -3 | L-Malate L-Apple acid L-Malic acid L-2-Hydroxybutanedioic acid Malate Malic acid |
| (S)-Methylmalonyl-CoA | 0 | (S)-Methylmalonyl-coenzyme A (2S)-Methylmalonyl-CoA D-Methylmalonyl-CoA |
| (S)-Ureidoglycine | 1 | |
| (S)-Ureidoglycolate | 0 | (-)-Ureidoglycolate |
| (Z)-But-2-ene-1,2,3-tricarboxylate | 1 | cis-2-Methylaconitate |
| [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylpropanoyl)dihydrolipoyllysine | 2 | S-(2-Methylpropanoyl)-dihydrolipoamide-E S-(2-Methylpropionyl)-dihydrolipoamide-E Enzyme N6-(S-[2-methylpropanoyl]dihydrolipoyl)lysine |
| [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine | 2 | S-Acetyldihydrolipoamide-E Enzyme N6-(S-acetyldihydrolipoyl)lysine |
| [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine | 2 | S-Succinyldihydrolipoamide-E Enzyme N6-(S-succinyldihydrolipoyl)lysine |
| [Enzyme]-cysteine | 0 | |
| [Enzyme]-S-sulfanylcysteine | 0 | |
| [Fe-S] cluster scaffold protein | 1 | |
| [Fe-S] cluster scaffold protein carrying a [4Fe-4S]2+ cluster | -1 | |
| [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol | 0 | [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol |
| [Glycine cleavage system H]-N6-octanoyl-L-lysine | -1 | [GcvH]-N6-octanoyl-L-lysine [GCSH]-N6-octanoyl-L-lysine |
| [Lipoyl-carrier protein]-L-lysine | -2 | Apoprotein |
| [Oxidized NADPH---hemoprotein reductase] | 2 | Oxidized flavoprotein |
| [Protein]-FMN-L-Threonine | 1 | [Protein]-flavin mononucleotide-L-threonine [Protein]-riboflavin-5'-phosphate-L-threonine |
| [Protein]-L-cysteine | 0 | Protein L-cysteine |
| [Protein]-L-threonine | -1 | |
| [Protein]-N6-(octanoyl)-L-lysine | 0 | Protein N6-(octanoyl)lysine |
| [Protein]-N6-[(R)-dihydrolipoyl]-L-lysine | 0 | [Lipoyl-carrier protein]-N6-[(R)-dihydrolipoyl]-L-lysine Protein N6-(dihydrolipoyl)lysine |
| [Protein]-S8-aminomethyldihydrolipoyllysine | 0 | H-protein-S-aminomethyldihydrolipoyllysine S-Aminomethyldihydrolipoylprotein [Glycine-cleavage complex H protein]-S-aminomethyl-N6-dihydrolipoyl-L-lysine |
| [Protein]-S-sulfanyl-L-cysteine | 0 | |
| [Reduced NADPH---hemoprotein reductase] | -2 | Reduced flavoprotein |
| 1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate | 0 | |
| 1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate | 0 | 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxylate 1-(5'-Phosphoribosyl)-5-amino-4-carboxyimidazole 5'-Phosphoribosyl-5-amino-4-imidazolecarboxylate 1-(5'-Phosphoribosyl)-4-carboxy-5-aminoimidazole 5'-Phosphoribosyl-4-carboxy-5-aminoimidazole 5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate |
| 1-(5-Phospho-D-ribosyl)-ATP | -2 | Phosphoribosyl-ATP N1-(5-Phospho-D-ribosyl)-ATP 1-(5-Phosphoribosyl)-ATP 1-(5-Phospho-beta-D-ribosyl)-ATP |
| 1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole | 0 | 1-(5'-Phosphoribosyl)-4-(N-succinocarboxamide)-5-aminoimidazole 5'-Phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole (S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate SAICAR |
| 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide | 1 | 5'-Phosphoribosyl-5-amino-4-imidazolecarboxamide 5'-Phospho-ribosyl-5-amino-4-imidazole carboxamide AICAR 5-Aminoimidazole-4-carboxamide ribotide 5-Phosphoribosyl-4-carbamoyl-5-aminoimidazole 5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide 5-Amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide |
| 1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide | 2 | 5'-Phosphoribosyl-5-formamido-4-imidazolecarboxamide 5-Formamido-1-(5-phosphoribosyl)imidazole-4-carboxamide 5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide FAICAR |
| 1,2-Diacyl-sn-glycerol | 2 | 1,2-Diacylglycerol L-1,2-Diacylglycerol |
| 1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one | -1 | 1,2-Dihydroxy-5-(methylsulfanyl)pent-1-en-3-one |
| 1,6-Anhydro-N-acetyl-beta-muramate | -1 | |
| 10-Formyltetrahydrofolate | -2 | 10-Formyl-THF |
| 12,18-Didecarboxysiroheme | 1 | |
| 15-Oxo-beta-bilirubin | 1 | beta-Staphylobilin |
| 1-Acyl-sn-glycerol 3-phosphate | 0 | 2-Lysophosphatidate Lysophosphatidate Lysophosphatidic acid |
| 1-Deoxy-D-xylulose 5-phosphate | 1 | |
| 1D-myo-Inositol 3-phosphate | 1 | D-myo-Inositol 3-phosphate myo-Inositol 3-phosphate Inositol 3-phosphate 1D-myo-Inositol 3-monophosphate D-myo-Inositol 3-monophosphate myo-Inositol 3-monophosphate Inositol 3-monophosphate 1L-myo-Inositol 1-phosphate L-myo-Inositol 1-phosphate |
| 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate | -1 | (E)-4-Hydroxy-3-methyl-but-2-enyl diphosphate (E)-4-Hydroxy-3-methylbut-2-en-1-yl diphosphate |
| 1-Phosphatidyl-D-myo-inositol | -1 | 1-Phosphatidyl-1D-myo-inositol 1-Phosphatidyl-myo-inositol Phosphatidyl-1D-myo-inositol (3-Phosphatidyl)-1-D-inositol 1,2-Diacyl-sn-glycero-3-phosphoinositol Phosphatidylinositol |
| 2-(2-Carboxy-4-methylthiazol-5-yl)ethyl phosphate | 0 | 4-Methyl-5-[2-(phosphonooxy)ethyl]-1,3-thiazole-2-carboxylate cThz-P |
| 2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine | 0 | 1-(5'-Phosphoribosyl)-N-formylglycinamidine 5'-Phosphoribosyl-N-formylglycinamidine 5'-Phosphoribosylformylglycinamidine 2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine |
| 2,3,4,5-Tetrahydrodipicolinate | -2 | Delta1-Piperidine-2,6-dicarboxylate L-2,3,4,5-Tetrahydrodipicolinate (S)-2,3,4,5-Tetrahydropyridine-2,6-dicarboxylate |
| 2,3-Bisphospho-D-glycerate | 0 | 2,3-Diphospho-D-glycerate D-Greenwald ester DPG |
| 2',3'-Cyclic nucleotide | -1 | Nucleoside 2',3'-cyclic phosphate |
| 2,3-Dihydroxy-3-methylbutanoate | -1 | 2,3-Dihydroxy-isovalerate 2,3-Dihydroxy-isovaleric acid |
| 2,3-Diketo-5-methylthiopentyl-1-phosphate | 0 | 5-(Methylthio)-2,3-dioxopentyl phosphate 5-(Methylsulfanyl)-2,3-dioxopentyl phosphate |
| 2,4,6/3,5-Pentahydroxycyclohexanone | 1 | scyllo-Inosose 2-Inosose |
| 2-[(2R,5Z)-2-Carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate | -1 | cThz*-P |
| 21-Phosphorifampicin | 1 | |
| 2-Acetolactate | 1 | |
| 2-Aminobut-2-enoate | 0 | (2Z)-2-Aminobut-2-enoic acid 2-Ammoniobut-2-enoate |
| 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate | 3 | 3-Methyl-1,2,3,4-tetrahydroxybutane-1,3-cyclic bisphosphate |
| 2-C-Methyl-D-erythritol 4-phosphate | -2 | |
| 2-Dehydro-3-deoxy-6-phospho-D-gluconate | 0 | 6-Phospho-2-dehydro-3-deoxy-D-gluconate 2-Keto-3-deoxy-6-phosphogluconate 2-Dehydro-3-deoxy-D-gluconate 6-phosphate |
| 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate | 0 | 3-Deoxy-D-arabino-hept-2-ulosonate 7-phosphate 3-Deoxy-arabino-heptulonate 7-phosphate 3-Deoxy-D-arabino-heptulosonic acid 7-phosphate DAHP 2-Dahp |
| 2-Dehydropantoate | 2 | |
| 2-Deoxy-D-ribose 1-phosphate | 2 | 2-Deoxy-alpha-D-ribose 1-phosphate |
| 2-Deoxy-D-ribose 5-phosphate | -1 | |
| 2'-Deoxyinosine 5'-phosphate | 1 | dIMP |
| 2'-Deoxyribonucleoside diphosphate | -1 | 2'-Deoxyribonucleoside 5'-diphosphate |
| 2-Hydroxy carboxylate | 1 | |
| 2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate | 1 | 2-Hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate 2-Hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl phosphate |
| 2-Hydroxymuconate semialdehyde | 1 | 2-Hydroxymuconic semialdehyde 2-Hydroxymuconate-6-semialdehyde |
| 2-Iminobutanoate | -1 | |
| 2-Iminopropanoate | -1 | |
| 2-Isopropylmaleate | 0 | beta-Isopropylmaleate |
| 2-Methoxy-6-all-trans-polyprenyl-1,4-benzoquinol | -1 | |
| 2-Methyl-3-oxopropanoate | 2 | 3-Oxo-2-methylpropanoate Methylmalonate semialdehyde |
| 2-Methylcitrate | -1 | (2S,3S)-2-Methylcitrate 2-Hydroxybutane-1,2,3-tricarboxylate (2S,3S)-2-Hydroxybutane-1,2,3-tricarboxylate |
| 2-Methylmaleate | 1 | Citraconate Citraconic acid Methylmaleic acid |
| 2-Methylpropanoyl-CoA | -2 | 2-Methylpropionyl-CoA Isobutyryl-CoA |
| 2-Oxo acid | -2 | 2-Oxocarboxylate 2-Oxocarboxylic acid 2-Oxo carboxylate |
| 2-Oxobutanoate | 4 | 2-Ketobutyric acid 2-Oxobutyric acid 2-Oxobutyrate 2-Oxobutanoic acid alpha-Ketobutyric acid alpha-Ketobutyrate |
| 2-Oxoglutaramate | 1 | 2-Oxoglutaramic acid alpha-Ketoglutaramate 2-Ketoglutaramate |
| 2-Oxoglutarate | -7 | Oxoglutaric acid 2-Ketoglutaric acid alpha-Ketoglutaric acid |
| 2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol | 0 | |
| 2-Phospho-D-glycerate | -2 | D-Glycerate 2-phosphate 2-Phospho-(R)-glycerate |
| 2-Phosphoglycolate | -1 | Phosphoglycolic acid |
| 2-Polyprenylphenol | 1 | 2-(all-trans-Polyprenyl)phenol |
| 2-Protocatechoylphloroglucinolcarboxylate | 1 | 2-(3,4-Dihydroxybenzoyloxy)-4,6-dihydroxybenzoate |
| 3-(4-Hydroxyphenyl)pyruvate | 0 | 4-Hydroxyphenylpyruvate p-Hydroxyphenylpyruvic acid |
| 3-(Imidazol-4-yl)-2-oxopropyl phosphate | 2 | Imidazole-acetol phosphate |
| 3-(Methylthio)propanoate | 1 | 3-(Methylthio)propionic acid 3-Methylthiopropionate 3-(Methylsulfanyl)propanoate |
| 3,4-Dihydroxybenzoate | 0 | 3,4-Dihydroxybenzoic acid Protocatechuate Protocatechuic acid |
| 3,4-Dihydroxybenzoyl-[aryl-carrier protein] | 1 | 3,4-Dihydroxybenzoyl-[acp] |
| 3',5'-Cyclic diGMP | 1 | cdiGMP 3',5'-Cyclic diguanylic acid Bis-(3',5')-cyclic diGMP Cyclic di-3',5'-guanylate |
| 3-[(1-Carboxyvinyl)oxy]benzoate | 0 | 3-[(1-Carboxyethenyl)oxy]benzoic acid |
| 3-Dehydroquinate | 0 | 3-Dehydroquinic acid 5-Dehydroquinate 5-Dehydroquinic acid |
| 3-Dehydroshikimate | 2 | |
| 3-D-Glucosyl-1,2-diacylglycerol | -1 | 1,2-Diacyl-3-beta-D-glucosyl-sn-glycerol Monoglucosyldiglyceride Monoglucosyldiacylglycerol Glcbeta1->3acyl2Gro 1,2-Diacyl-3-O-(beta-D-glucopyranosyl)-sn-glycerol |
| 3-Hydroxy-2-methylpropanoate | -1 | 3-Hydroxyisobutyrate 3-Hydroxyisobutyric acid |
| 3-Methyl-2-oxobutanoic acid | -2 | 3-Methyl-2-oxobutyric acid 3-Methyl-2-oxobutanoate 2-Oxo-3-methylbutanoate 2-Oxoisovalerate 2-Oxoisopentanoate alpha-Ketovaline 2-Ketovaline 2-Keto-3-methylbutyric acid |
| 3-Oxo acid | -1 | 3-Keto acid |
| 3-Oxoacyl-[acyl-carrier protein] | 1 | |
| 3-Oxoacyl-CoA | 3 | |
| 3-Oxopropanoate | -1 | Malonate semialdehyde |
| 3'-Phosphoadenylyl sulfate | 2 | 3'-Phosphoadenosine 5'-phosphosulfate 3'-Phospho-5'-adenylyl sulfate PAPS |
| 3-Phospho-D-glycerate | 1 | D-Glycerate 3-phosphate 3-Phospho-(R)-glycerate 3-Phosphoglycerate |
| 3-Phospho-D-glyceroyl phosphate | 2 | 1,3-Bisphospho-D-glycerate (R)-2-Hydroxy-3-(phosphonooxy)-1-monoanhydride with phosphoric propanoic acid D-Glycerate 1,3-diphosphate |
| 3-Phosphonooxypyruvate | 1 | 3-Phosphonooxypyruvic acid 3-Phosphohydroxypyruvate 3-Phosphohydroxypyruvic acid 3-Phosphooxypyruvate |
| 3-Phosphonopyruvate | 0 | |
| 3'-Ribonucleotide | -1 | 3'-Phosphomononucleotides 3'-Nucleoside monophosphate |
| 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol | 0 | |
| 4a-Hydroxy-5,6,7,8-tetrahydropteridine | 1 | |
| 4-Amino-2-methyl-5-(phosphooxymethyl)pyrimidine | 1 | (4-Amino-2-methylpyrimidin-5-yl)methyl phosphate 4-Amino-5-hydroxymethyl-2-methylpyrimidine phosphate HMP-P |
| 4-Amino-4-deoxychorismate | 0 | ADC |
| 4-Amino-5-aminomethyl-2-methylpyrimidine | -1 | Amino-HMP |
| 4-Amino-5-hydroxymethyl-2-methylpyrimidine | 0 | Toxopyrimidine 4-Amino-2-methyl-5-pyrimidinemethanol HMP |
| 4-Amino-5-hydroxymethyl-2-methylpyrimidine diphosphate | 0 | 4-Amino-2-methyl-5-(diphosphooxymethyl)pyrimidine HMP-PP |
| 4-Aminobenzoate | 0 | ABEE 4-Aminobenzoic acid p-Aminobenzoate |
| 4-Aminobutanoate | -1 | 4-Aminobutanoic acid 4-Aminobutyrate 4-Aminobutyric acid gamma-Aminobutyric acid GABA |
| 4-Fumarylacetoacetate | -1 | 4-Fumarylacetoacetic acid Fumarylacetoacetate |
| 4-Hydroxy-3-polyprenylbenzoate | 0 | 4-Hydroxy-3-all-trans-polyprenylbenzoate 3-Polyprenyl-4-hydroxybenzoate |
| 4-Hydroxybenzoate | -2 | Hydroxybenzoic acid 4-Hydroxybenzoic acid Hydroxybenzenecarboxylic acid |
| 4-Maleylacetoacetate | 1 | 4-Maleylacetoacetic acid |
| 4-Methyl-2-oxopentanoate | 3 | 2-Oxoisocaproate |
| 4-Methyl-5-(2-phosphooxyethyl)thiazole | -1 | 4-Methyl-5-(2-phosphonooxyethyl)thiazole 5-(2-Hydroxyethyl)-4-methylthiazole phosphate HET-P |
| 4-Methylthio-2-oxobutanoic acid | 0 | 4-Methylthio-2-oxobutanoate 4-(Methylsulfanyl)-2-oxobutanoate 2-Keto-4-methylthiobutyric acid 2-Oxo-4-methylthiobutanoate 2-Oxo-4-methylthiobutanoic acid |
| 4-Nitrophenol | 1 | p-Nitrophenol PNP Niphen 4-Hydroxynitrobenzene |
| 4-Nitrophenyl phosphate | -1 | |
| 4-Phospho-L-aspartate | 2 | L-4-Aspartyl phosphate |
| 5-(2-Hydroxyethyl)-4-methylthiazole | 1 | 4-Methyl-5-(2'-hydroxyethyl)-thiazole 4-Methyl-5-(2-hydroxyethyl)thiazole HET |
| 5-(5-Phospho-D-ribosylaminoformimino)-1-(5-phosphoribosyl)-imidazole-4-carboxamide | 0 | N-(5'-Phospho-D-ribosylformimino)-5-amino-1-(5''-phospho-D-ribosyl)-4-imidazolecarboxamide N-(5'-Phosphoribosylformimino)-5-amino-1-(5''-phosphoribosyl)-4-imidazolecarboxamide Phosphoribosyl-formimino-AICAR-phosphate 1-(5-Phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide 1-(5-Phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide |
| 5,10-Methenyltetrahydrofolate | 1 | |
| 5,10-Methylenetetrahydrofolate | -3 | (6R)-5,10-Methylenetetrahydrofolate 5,10-Methylene-THF |
| 5-Amino-6-(1-D-ribitylamino)uracil | 0 | 5-Amino-6-(D-ribitylamino)uracil 6-(1-D-Ribitylamino)-5-amino-2,4-dihydroxypyrimidine 6-(1-D-Ribitylamino)-5-aminouracil 4-(1-D-Ribitylamino)-5-amino-2,6-dihydroxypyrimidine |
| 5-Amino-6-(5'-phospho-D-ribitylamino)uracil | -1 | 5-Amino-2,6-dioxy-4-(5'-phospho-D-ribitylamino)pyrimidine 5-Amino-6-(5-phospho-D-ribitylamino)uracil |
| 5-Aminolevulinate | 0 | 5-Amino-4-oxopentanoate 5-Amino-4-oxovaleric acid |
| 5-Aminopentanoate | -1 | 5-Aminopentanoic acid 5-Aminovaleric acid |
| 5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole | 0 | |
| 5-Dehydro-4-deoxy-D-glucarate | 1 | (2R,3S)-2,3-Dihydroxy-5-oxohexanedioate |
| 5'-Deoxyadenosine | 11 | |
| 5-Deoxy-D-ribose | 1 | |
| 5-Methyltetrahydrofolate | -2 | |
| 5-Methyltetrahydropteroyltri-L-glutamate | -1 | |
| 5'-Methylthioadenosine | -1 | Methylthioadenosine S-Methyl-5'-thioadenosine 5-Methylthioadenosine 5'-Deoxy-5'-(methylthio)adenosine Thiomethyladenosine MTA 5'-Deoxy-5'-(methylsulfanyl)adenosine |
| 5-Methylthio-D-ribose | 0 | S-Methyl-5-thio-D-ribose 5-(Methylsulfanyl)-D-ribose |
| 5-O-(1-Carboxyvinyl)-3-phosphoshikimate | 0 | O5-(1-Carboxyvinyl)-3-phosphoshikimate |
| 5'-O-Phosphonoadenylyl-(3'->5')-adenosine | 1 | pApA |
| 5-Oxo-delta-bilirubin | 1 | delta-Staphylobilin |
| 5-Oxopentanoate | 1 | Glutarate semialdehyde |
| 5-Oxoproline | -1 | Pidolic acid Pyroglutamic acid 5-Pyrrolidone-2-carboxylic acid Pyroglutamate 5-Oxo-L-proline L-Pyroglutamic acid L-5-Pyrrolidone-2-carboxylic acid |
| 5-Phospho-alpha-D-ribose 1-diphosphate | 9 | 5-Phosphoribosyl diphosphate 5-Phosphoribosyl 1-pyrophosphate PRPP |
| 5-Phosphoribosylamine | -2 | 5-Phospho-beta-D-ribosylamine 5-Phospho-D-ribosylamine 5-Phosphoribosyl-1-amine |
| 5'-Phosphoribosylglycinamide | 0 | GAR N1-(5-Phospho-D-ribosyl)glycinamide Glycinamide ribonucleotide N1-(5-Phospho-beta-D-ribosyl)glycinamide |
| 5'-Phosphoribosyl-N-formylglycinamide | 0 | N-Formyl-GAR N-Formylglycinamide ribonucleotide N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide N2-Formyl-N1-(5-phospho-beta-D-ribosyl)glycinamide |
| 5'-Ribonucleotide | -1 | |
| 5'-S-Methyl-5'-thioinosine | 1 | 5'-Deoxy-5'-methylthioinosine S-Methyl-5'-thioinosine |
| 6-(Hydroxymethyl)-7,8-dihydropterin | 0 | 6-Hydroxymethyl-7,8-dihydropterin 2-Amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine |
| 6,7-Dimethyl-8-(D-ribityl)lumazine | 1 | |
| 6-Amino-6-deoxyfutalosine | 1 | |
| 6-Carboxy-5,6,7,8-tetrahydropterin | 0 | 6-Carboxytetrahydropterin |
| 6-Hydroxymethyl-7,8-dihydropterin diphosphate | 0 | (7,8-Dihydropterin-6-yl)methyl diphosphate 2-Amino-7,8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine 2-Amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate 7,8-Dihydropterin pyrophosphate |
| 6-Methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol | 1 | |
| 6-Phospho-beta-D-glucosyl-(1,4)-D-glucose | 0 | Cellobiose 6'-phosphate Cellobiose 6-phosphate |
| 6-Pyruvoyltetrahydropterin | 1 | 6-(1,2-Dioxopropyl)-5,6,7,8-tetrahydropterin 6-Pyruvoyl-5,6,7,8-tetrahydropterin |
| 7,8-Diaminononanoate | 0 | 7,8-Diaminopelargonic acid DAPA |
| 7,8-Dihydromonapterin | 1 | |
| 7,8-Dihydroneopterin | -3 | Dihydroneopterin 2-Amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine |
| 7,8-Dihydroneopterin 3'-triphosphate | -1 | 2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine triphosphate 6-(L-erythro-1,2-Dihydroxypropyl 3-triphosphate)-7,8-dihydropterin 6-[(1S,2R)-1,2-Dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin |
| 7,8-Dihydroxanthopterin | 1 | |
| 7-Aminomethyl-7-carbaguanine | -2 | 7-Aminomethyl-7-deazaguanine |
| 7-Carboxy-7-carbaguanine | 0 | 7-Carboxy-7-deazaguanine |
| 7-Cyano-7-carbaguanine | 2 | 7-Cyano-7-deazaguanine |
| 8-Amino-7-oxononanoate | 0 | 8-Amino-7-oxononanoic acid 7-Keto-8-aminopelargonic acid KAPA |
| 8-Oxo-dGMP | 1 | 2'-Deoxy-7,8-dihydro-8-oxo-5'-guanylate 8-Hydroxydeoxyguanosine 5'-monophosphate |
| 8-Oxo-dGTP | -1 | 8-Oxodeoxyguanosine triphosphate 8-Oxo-7,8-dihydro-2'-deoxyguanosine 5'-triphosphate |
| Acceptor | 0 | Hydrogen-acceptor A Oxidized donor |
| Acetaldehyde | 4 | Ethanal |
| Acetate | 4 | Acetic acid Ethanoic acid |
| Acetoacetate | 2 | 3-Oxobutanoic acid beta-Ketobutyric acid Acetoacetic acid |
| Acetoacetyl-[acp] | 1 | Acetoacetyl-[acyl-carrier protein] |
| Acetoacetyl-CoA | 3 | Acetoacetyl coenzyme A 3-Acetoacetyl-CoA |
| Acetyl phosphate | 2 | |
| Acetyl-CoA | -18 | Acetyl coenzyme A |
| Acetyl-maltose | 1 | 6-O-Acetyl-alpha-D-glucopyranosyl-(1->4)-D-glucose |
| Acyl phosphate | 1 | Fatty acyl phosphate |
| Acyl-[acyl-carrier protein] | -5 | |
| Acyl-carrier protein | 3 | ACP [Acyl-carrier protein] Holo-[acyl-carrier protein] |
| Acyl-CoA | -1 | Acyl coenzyme A |
| Adenine | 2 | 6-Aminopurine |
| Adenosine | 1 | |
| Adenosine 3',5'-bisphosphate | -2 | PAP 3'-Phosphoadenylate Phosphoadenosine phosphate |
| Adenosine-GDP-cobinamide | 0 | Adenosylcobinamide-GDP |
| Adenosyl cobinamide | -1 | Adenosylcobinamide |
| Adenosyl cobinamide phosphate | 1 | Adenosylcobinamide phosphate |
| Adenosyl cobyrinate a,c diamide | 0 | Adenosyl cobyrinate diamide Adenosylcob(III)yrinic acid a,c-diamide Adenosylcobyrinic acid a,c-diamide |
| Adenosyl cobyrinate hexaamide | 1 | Adenosylcobyric acid |
| Adenosylcobalamin 5'-phosphate | 0 | |
| Adenylated molybdopterin | 0 | Adenylyl-molybdopterin |
| Adenylyl sulfate | 1 | Adenosine 5'-phosphosulfate APS 5'-Adenylyl sulfate |
| ADP | 103 | Adenosine 5'-diphosphate |
| ADP-ribose | -1 | ADP-D-ribose Adenosine diphosphate ribose |
| Agmatine | 0 | (4-Aminobutyl) guanidine |
| Alcohol | 2 | |
| Aldehyde | 0 | RCHO |
| Alkane | -2 | RH |
| Alkane-alpha,omega-diamine | -1 | |
| Allantoate | -1 | Allantoic acid |
| all-trans-Heptaprenyl diphosphate | 0 | |
| all-trans-Polyprenyl diphosphate | -1 | Polyisopentenylpyrophosphate Polyisopentenyldiphosphate trans-Polyisopentenyldiphosphate Polyprenyl diphosphate |
| alpha,alpha-Trehalose | -1 | alpha,alpha'-Trehalose Trehalose |
| alpha,alpha'-Trehalose 6-phosphate | 0 | Trehalose 6-phosphate |
| alpha-D-Aldose 1-phosphate | 1 | beta-L-Aldose 1-phosphate Monosaccharide 1-phosphate |
| alpha-D-Glucosamine 1-phosphate | -2 | D-Glucosamine 1-phosphate |
| alpha-D-Glucose | -1 | |
| alpha-D-Glucose 6-phosphate | -1 | |
| alpha-D-Ribose 1-phosphate | 1 | Ribose 1-phosphate D-Ribose 1-phosphate |
| alpha-Isopropylmalate | 2 | (2S)-2-Isopropylmalate (2S)-2-Hydroxy-2-isopropylsuccinic acid 2-Isopropylmalic acid 3-Carboxy-3-hydroxy-4-methylpentanoate 3-Carboxy-3-hydroxyisocaproate |
| alpha-Ribazole | 0 | N1-(alpha-D-Ribosyl)-5,6-dimethylbenzimidazole |
| Aminoimidazole ribotide | -1 | AIR 1-(5'-Phosphoribosyl)-5-aminoimidazole 5'-Phosphoribosyl-5-aminoimidazole 1-(5-Phospho-D-ribosyl)-5-aminoimidazole 5-Amino-1-(5-phospho-D-ribosyl)imidazole 5-Amino-1-(5-phospho-beta-D-ribosyl)imidazole |
| Ammonia | 27 | NH3 |
| AMP | 48 | Adenosine 5'-monophosphate Adenylic acid Adenylate 5'-AMP 5'-Adenylic acid 5'-Adenosine monophosphate Adenosine 5'-phosphate |
| Anthranilate | 1 | Anthranilic acid o-Aminobenzoic acid Vitamin L1 2-Aminobenzoate |
| Apo-[carboxylase] | -1 | [Biotin carboxyl-carrier protein]-L-lysine |
| Arsenate ion | 1 | Arsenate |
| Arsenite | -1 | Trisoxylatoarsine |
| Aryl-carrier protein | -1 | [Aryl-carrier protein] Holo-[aryl-carrier protein] |
| Ascorbate | -1 | Ascorbic acid L-Ascorbate L-Ascorbic acid Vitamin C |
| ATP | -157 | Adenosine 5'-triphosphate |
| beta-Alanine | 0 | 3-Aminopropionic acid 3-Aminopropanoate |
| beta-D-Fructose 6-phosphate | 0 | beta-D-Fructofuranose 6-phosphate |
| beta-D-Glucose | 1 | beta-D-Glucopyranose |
| beta-D-Ribofuranose | 1 | |
| beta-D-Ribopyranose | -1 | Ribose |
| beta-Lactam | -1 | |
| Biotin | 0 | D-Biotin Vitamin H Coenzyme R |
| Butanoic acid | 1 | Butanoate Butyrate Butyric acid |
| Butanoyl-CoA | 0 | Butyryl-CoA |
| Carbamate | 0 | Carbamic acid Aminoformic acid |
| Carbamoyl phosphate | 0 | |
| Carbonic acid | -1 | Dihydrogen carbonate H2CO3 |
| Carboxybiotin-carboxyl-carrier protein | 0 | [Biotin carboxyl-carrier protein]-carboxybiotin-N6-L-lysine [Biotin carboxyl-carrier protein]-N6-carboxybiotinyl-L-lysine |
| Carboxylate | 3 | R-COOH Monocarboxylate Carboxylic acid |
| Carboxyphosphate | 0 | |
| Cardiolipin | 1 | Diphosphatidylglycerol 1',3'-Bis(1,2-diacyl-sn-glycero-3-phospho)-sn-glycerol |
| Catechol | -1 | 1,2-Benzenediol o-Benzenediol 1,2-Dihydroxybenzene Brenzcatechin Pyrocatechol |
| CDP-4-dehydro-6-deoxy-D-glucose | 1 | |
| CDP-diacylglycerol | -2 | CDP-1,2-diacylglycerol 1,2-Diacyl-sn-glycero-3-cytidine-5'-diphosphate |
| CDP-glucose | 0 | CDP-D-Glucose |
| Cellobiose | -1 | 1-beta-D-Glucopyranosyl-4-D-glucopyranose |
| Chitobiose | -1 | Diacetylchitobiose N,N'-Diacetylchitobiose |
| Choline phosphate | 1 | Phosphorylcholine Phosphocholine O-Phosphocholine |
| Chorismate | -3 | Chorismic acid (3R,4R)-3-[(1-Carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylate |
| cis-3-Alkyl-4-alkyloxetan-2-one | 1 | |
| cis-Aconitate | 0 | cis-Aconitic acid |
| Citrate | 0 | Citric acid 2-Hydroxy-1,2,3-propanetricarboxylic acid 2-Hydroxytricarballylic acid |
| Cl- | -1 | Chloride Chloride ion |
| CMP | 6 | Cytidine-5'-monophosphate Cytidylic acid |
| CO | 2 | Carbon monoxide |
| CO2 | 45 | Carbon dioxide |
| CoA | 18 | Coenzyme A CoA-SH |
| Cob(II)alamin | -1 | Vitamin B12r |
| Cob(II)yrinate a,c diamide | 0 | Cob(II)yrinate diamide Cob(II)yrinic acid a,c-diamide Cobyrinate a,c-diamide Cobyrinic acid a,c-diamide |
| Cobalt ion | 1 | Cobalt(2+) Co2+ Co(II) |
| Cobalt-factor III | 0 | |
| Cobalt-precorrin 4 | -1 | |
| Cobalt-precorrin 5A | 1 | |
| Cobalt-precorrin 8 | 0 | Cobalt-precorrin-8 |
| Cobalt-sirohydrochlorin | -2 | Cobalt-factor II |
| Cobamide coenzyme | 3 | Adenosylcobalamin Adenosylcob(III)alamin Deoxyadenosylcobalamin Cobamamide Vitamin B12 coenzyme 5,6-Dimethylbenzimidazolyl-5-deoxyadenosyl-cobamide (5'-Deoxy-5'-adenosyl)cobamide coenzyme (5,6-Dimethylbenzimidazolyl)cobamide coenzyme alpha-(5,6-Dimethylbenzimidazolyl)cobamide coenzyme 5'-Deoxy-5'-adenosylcobalamin 5'-Deoxy-5'-adenosyl vitamin B12 5'-Deoxy-5'-adenosyl-5,6-dimethylbenzimidazolylcobamide 5,6-Dimethylbenzimidazolyl-Co-5'-deoxy-5'-adenosylcobamide Calomide Cobalamin coenzyme Coenzyme B12 DMBC coenzyme Dibencozide Funacomide |
| Cobyrinate | 0 | Cobyrinic acid Cob(II)yrinate Cob(II)yrinic acid |
| Cobyrinate c-monamide | 0 | Cobyrinic acid c-monoamide |
| Crotonoyl-CoA | 1 | Crotonyl-CoA 2-Butenoyl-CoA trans-But-2-enoyl-CoA But-2-enoyl-CoA (E)-But-2-enoyl-CoA (2E)-But-2-enoyl-CoA |
| CTP | -5 | Cytidine 5'-triphosphate Cytidine triphosphate |
| Cyanide ion | -1 | Prussiate CN- Cyano Cyanide |
| Cyclic di-3',5'-adenylate | 0 | Cyclic di-AMP |
| Cytidine | -3 | |
| Cytidylyl molybdenum cofactor | 1 | Molybdopterin cytosine dinucleotide cofactor |
| Cytosine | 1 | |
| D-1-Aminopropan-2-ol O-phosphate | 0 | (R)-1-Aminopropan-2-yl phosphate |
| D-4'-Phosphopantothenate | 0 | (R)-4'-Phosphopantothenate |
| D-Alanine | -2 | D-2-Aminopropionic acid D-Ala |
| D-Alanyl-D-alanine | 0 | D-Ala-D-Ala |
| D-Amino acid | 2 | |
| dAMP | 1 | 2'-Deoxyadenosine 5'-phosphate 2'-Deoxyadenosine 5'-monophosphate Deoxyadenylic acid Deoxyadenosine monophosphate |
| dCDP | 1 | 2'-Deoxycytidine diphosphate 2'-Deoxycytidine 5'-diphosphate |
| dCMP | -1 | Deoxycytidylic acid Deoxycytidine monophosphate Deoxycytidylate 2'-Deoxycytidine 5'-monophosphate |
| Deamino-NAD+ | 0 | Deamido-NAD+ Deamido-NAD Nicotinic acid adenine dinucleotide |
| Decaprenol phosphate | -1 | mono-trans, poly-cis-Decaprenyl phosphate trans,octacis-Decaprenyl phosphate |
| Decylubiquinol | 1 | 6-Decylubiquinol 2-Decyl-5,6-dimethoxy-3-methyl-1,4-benzenediol |
| Decylubiquinone | -1 | 6-Decylubiquinone 2,3-Dimethoxy-5-methyl-6-decyl-1,4-benzoquinone |
| Dehydroalanine | 0 | 2-Aminoacrylate 2-Aminoprop-2-enoate |
| Dehypoxanthine futalosine | 0 | |
| Demethylmenaquinol | -1 | |
| Deoxyadenosine | -1 | 2'-Deoxyadenosine |
| Deoxycytidine | -2 | 2'-Deoxycytidine |
| Deoxyguanosine | -1 | 2'-Deoxyguanosine |
| Deoxynucleoside triphosphate | -1 | 2'-Deoxyribonucleoside 5'-triphosphate 2'-Deoxyribonucleoside triphosphate |
| Deoxyuridine | 0 | 2-Deoxyuridine 2'-Deoxyuridine |
| Dephospho-CoA | 0 | Dephosphocoenzyme A 3'-Dephospho-CoA |
| D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate | 0 | D-erythro-Imidazole-glycerol 3-phosphate D-erythro-Imidazole-glycerol phosphate |
| D-Erythrose 4-phosphate | 1 | |
| Dethiobiotin | 0 | Desthiobiotin |
| D-Fructose | -2 | Levulose Fruit sugar D-arabino-Hexulose |
| D-Fructose 1,6-bisphosphate | -1 | |
| D-Fructose 1-phosphate | 0 | |
| D-Fructose 6-phosphate | 5 | D-Fructose 6-phosphoric acid Neuberg ester |
| D-Galactaro-1,4-lactone | -1 | |
| D-Glucaro-1,4-lactone | -1 | |
| D-Glucosaminate-6-phosphate | -1 | 2-Amino-2-deoxy-D-gluconate 6-phosphate |
| D-Glucosamine 6-phosphate | 3 | D-Glucosamine phosphate |
| D-Glucose | 0 | Grape sugar Dextrose Glucose D-Glucopyranose |
| D-Glucose 1-phosphate | -2 | alpha-D-Glucose 1-phosphate Cori ester D-Glucose alpha-1-phosphate |
| D-Glucose 6-phosphate | 3 | Glucose 6-phosphate Robison ester |
| D-Glutamate | 1 | D-Glutamic acid D-Glutaminic acid D-2-Aminoglutaric acid |
| D-Glyceraldehyde 3-phosphate | -2 | (2R)-2-Hydroxy-3-(phosphonooxy)-propanal Glyceraldehyde 3-phosphate |
| D-Glycerate | -1 | Glycerate (R)-Glycerate Glyceric acid |
| dGMP | 1 | 2'-Deoxyguanosine 5'-monophosphate 2'-Deoxyguanosine 5'-phosphate Deoxyguanylic acid Deoxyguanosine monophosphate |
| Diacylglycerol | 1 | Diglyceride |
| Dicarboxylate | 1 | Dicarboxylic acid |
| Diglucosyldiacylglycerol | 0 | beta-Gentiobiosyldiacylglycerol Glc-beta1->6Glc-beta1->3acyl2Gro Glcbeta1->6Glcbeta1->3acyl2Gro 1,2-Diacyl-3-O-[beta-D-glucopyranosyl-(1->6)-O-beta-D-glucopyranosyl]-sn-glycerol |
| Dihydroflavodoxin | -1 | |
| Dihydrofolate | 3 | Dihydrofolic acid 7,8-Dihydrofolate 7,8-Dihydrofolic acid 7,8-Dihydropteroylglutamate |
| Dihydropteroate | 0 | 7,8-Dihydropteroate |
| Dihydrourocanate | -1 | Deaminohistidine 3-(1H-Imidazol-4-yl)propanoate |
| Dimethylallyl diphosphate | -2 | 2-Isopentenyl diphosphate Delta2-Isopentenyl diphosphate Dimethylallyl pyrophosphate DMAPP Monoprenyl diphosphate Prenyl diphosphate |
| Dimethylallyl phosphate | -1 | Prenyl phosphate |
| Dimethylbenzimidazole | 0 | 5,6-Dimethylbenzimidazole |
| Diphosphate | 72 | Diphosphoric acid Pyrophosphate Pyrophosphoric acid PPi |
| dITP | -1 | 2'-Deoxyinosine-5'-triphosphate 2'-Deoxyinosine 5'-triphosphate |
| di-trans,poly-cis-Undecaprenyl diphosphate | 1 | Undecaprenyl diphosphate Bactoprenyl diphosphate ditrans,octacis-Undecaprenyl diphosphate |
| di-trans,poly-cis-Undecaprenyl phosphate | 0 | Undecaprenyl phosphate ditrans,octacis-Undecaprenyl phosphate |
| Divinylprotochlorophyllide | 1 | 2,4-Divinylprotochlorophyllide Mg-2,4-Divinyl-phaeoporphyrin a5-monomethylester 3,8-Divinyl protochlorophyllide a |
| D-Mannitol 1-phosphate | 0 | |
| D-Mannose 6-phosphate | -1 | |
| D-myo-Inositol 1,2-cyclic phosphate | 1 | 1D-myo-Inositol 1,2-cyclic phosphate |
| DNA | 2 | DNAn DNAn+1 (Deoxyribonucleotide)n (Deoxyribonucleotide)m (Deoxyribonucleotide)n+m Deoxyribonucleic acid |
| DNA 5-methylcytosine | 1 | DNA containing 5-methylcytosine 5-Methylcytosine (in DNA) |
| DNA 6-methylaminopurine | 1 | N6-Methyladenine in DNA |
| DNA adenine | -1 | Adenine in DNA |
| DNA containing 6-O-methylguanine | -1 | |
| D-Ribose | 0 | |
| D-Ribose 5-phosphate | 0 | Ribose 5-phosphate |
| D-Ribulose 5-phosphate | -1 | |
| D-Serine | 1 | |
| D-Sorbitol | -1 | D-Glucitol L-Gulitol Sorbitol |
| D-Tagatose 1,6-bisphosphate | -1 | |
| dTDP | 1 | Deoxythymidine 5'-diphosphate |
| dTDP-4-dehydro-beta-L-rhamnose | 2 | dTDP-4-dehydro-6-deoxy-beta-L-mannose dTDP-4-oxo-6-deoxy-L-mannose dTDP-4-oxo-L-rhamnose |
| dTDP-4-oxo-6-deoxy-D-glucose | 0 | dTDP-4-dehydro-6-deoxy-D-glucose dTDP-4-dehydro-6-deoxy-alpha-D-glucose dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose dTDP-4-oxo-6-deoxy-alpha-D-glucose dTDP-4-dehydro-6-deoxy-alpha-D-galactose dTDP-4-dehydro-6-deoxy-D-galactose dTDP-6-deoxy-D-xylo-hexos-4-ulose dTDP-6-deoxy-D-xylo-4-hexulose 4,6-Dideoxy-4-oxo-dTDP-D-glucose |
| dTDP-glucose | 0 | dTDP-D-glucose dTDP-alpha-D-glucose |
| dTDP-L-rhamnose | -1 | dTDP-6-deoxy-L-mannose dTDP-6-deoxy-beta-L-mannose dTDP-beta-L-rhamnose |
| dTMP | 1 | Thymidine 5'-phosphate Deoxythymidine 5'-phosphate Thymidylic acid 5'-Thymidylic acid Thymidine monophosphate Deoxythymidylic acid Thymidylate |
| dTTP | -1 | Deoxythymidine triphosphate Deoxythymidine 5'-triphosphate TTP |
| dUMP | 1 | Deoxyuridylic acid Deoxyuridine monophosphate Deoxyuridine 5'-phosphate 2'-Deoxyuridine 5'-phosphate |
| dUTP | -1 | 2'-Deoxyuridine 5'-triphosphate |
| D-Xylulose 5-phosphate | 2 | |
| e- | 0 | Electron |
| Electron-transferring flavoprotein | -1 | Electron-transfer flavoprotein |
| Enzyme N6-(dihydrolipoyl)lysine | -3 | Dihydrolipoamide-E [E2 protein]-N6-[(R)-dihydrolipoyl]-L-lysine [Lipoyl-carrier protein E2]-N6-[(R)-dihydrolipoyl]-L-lysine |
| Enzyme N6-(lipoyl)lysine | -1 | Lipoamide-E [E2 protein]-N6-lipoyl-L-lysine [Lipoyl-carrier protein E2]-N6-lipoyl-L-lysine |
| Ester | -1 | Carboxylic ester |
| Ethanolamine | -1 | Aminoethanol 2-Hydroxyethylamine |
| Ethylnitronate | -1 | |
| FAD | 0 | Flavin adenine dinucleotide |
| Fatty acid | -1 | |
| Fatty acid anion | 1 | Alkanate Alkane acid |
| Fe2+ | 1 | Fe(II) Ferrous ion Iron(2+) |
| Fe3+ | 1 | Fe(III) Ferric ion Iron(3+) |
| Fe-coproporphyrin III | -2 | Coproheme III |
| Ferricytochrome b5 | 1 | |
| Ferricytochrome c | 0 | Cytochrome c3+ |
| Ferrocytochrome b5 | -1 | |
| Ferrocytochrome c | 1 | Cytochrome c2+ Reduced cytochrome c |
| Flavodoxin semiquinone | 1 | |
| FMN | 1 | Riboflavin-5-phosphate Flavin mononucleotide |
| Folinic acid | -1 | Leucovorin 5-Formyltetrahydrofolate L(-)-5-Formyl-5,6,7,8-tetrahydrofolic acid |
| Formaldehyde | 1 | Methanal Oxomethane Oxomethylene Methylene oxide Formalin |
| Formamide | 1 | Methanamide |
| Formate | 6 | Methanoic acid Formic acid |
| Formyl-L-methionyl peptide | -1 | |
| Fructoselysine | -1 | N6-(D-Fructosyl)-L-lysine |
| Fumarate | 7 | Fumaric acid trans-Butenedioic acid |
| Futalosine | -1 | |
| Galactitol | -1 | Dulcitol Dulcose |
| Galactitol 1-phosphate | 1 | L-Galactitol 1-phosphate D-Galactitol 6-phosphate |
| GDP | 5 | Guanosine 5'-diphosphate Guanosine diphosphate |
| Geranyl diphosphate | 0 | |
| Geranylgeranyl diphosphate | 1 | Geranylgeranyl pyrophosphate all-trans-Geranylgeranyl diphosphate all-trans-Geranylgeranyl pyrophosphate (2E,6E,10E)-3,7,11,15-Tetramethylhexadeca-2,6,10,14-tetraen-1-yl diphosphate |
| Glutaminyl-tRNA | 2 | L-Glutaminyl-tRNA(Gln) Glutaminyl-tRNA(Gln) Gln-tRNA(Gln) |
| Glutaredoxin | -1 | |
| Glutathione | 0 | 5-L-Glutamyl-L-cysteinylglycine N-(N-gamma-L-Glutamyl-L-cysteinyl)glycine gamma-L-Glutamyl-L-cysteinyl-glycine GSH Reduced glutathione |
| Glutathione disulfide | 1 | GSSG Oxiglutatione Oxidized glutathione |
| Glycerol | -2 | Glycerin 1,2,3-Trihydroxypropane 1,2,3-Propanetriol |
| Glycerone | 1 | Dihydroxyacetone 1,3-Dihydroxyacetone 1,3-Dihydroxy-2-propanone 1,3-Dihydroxypropan-2-one |
| Glycerone phosphate | 4 | Dihydroxyacetone phosphate 3-Hydroxy-2-oxopropyl phosphate |
| Glycerophosphodiester | -1 | |
| Glycine | -4 | Aminoacetic acid Gly |
| Glycine cleavage system H | 1 | [Glycine cleavage system H]-L-lysine [GcvH]-L-lysine [GCSH]-L-lysine |
| Glycolaldehyde | 2 | Hydroxyacetaldehyde |
| Glycolate | 0 | Glycolic acid Hydroxyacetic acid |
| Glycyl-tRNA(Gly) | 1 | |
| Glyoxylate | 1 | Glyoxalate Glyoxylic acid |
| GMP | 2 | Guanosine 5'-phosphate Guanosine monophosphate Guanosine 5'-monophosphate Guanylic acid |
| GTP | -11 | Guanosine 5'-triphosphate |
| Guanine | 0 | 2-Amino-6-hydroxypurine |
| Guanosine 3',5'-bis(diphosphate) | -1 | Guanosine 3'-diphosphate 5'-diphosphate Guanosine 5'-diphosphate,3'-diphosphate |
| Guanosine 3'-diphosphate 5'-triphosphate | 1 | Guanosine 5'-triphosphate,3'-diphosphate |
| Guanylyl molybdenum cofactor | 1 | Molybdopterin guanine dinucleotide cofactor |
| H+ | 65 | Hydron |
| Halide | 1 | Hydrogen halide HX Halo acid |
| Harderoheme III | 0 | |
| HCO3- | -6 | Hydrogencarbonate Bicarbonate Hydrogen carbonate Acid carbonate |
| Heme | 0 | Haem Protoheme Heme B Protoheme IX |
| Holo-[carboxylase] | 1 | Biotin-carboxyl-carrier protein [Biotin carboxyl-carrier protein]-biotin-N6-L-lysine [Biotin carboxyl-carrier protein]-N6-biotinyl-L-lysine |
| Homogentisate | 0 | Homogentisic acid 2,5-Dihydroxyphenylacetic acid 2,5-Dihydroxyphenylacetate |
| Hydrogen peroxide | -1 | H2O2 Oxydol |
| Hydrogen selenide | 1 | Selenide |
| Hydrogen sulfide | 2 | Hydrogen-sulfide H2S Sulfide |
| Hydrogenobyrinate | 0 | Hydrogenobyrinic acid |
| Hydrogenobyrinate a,c diamide | 1 | Hydrogenobyrinate diamide Hydrogenobyrinic acid a,c-diamide |
| Hydroquinone | 10 | p-Hydroquinone Quinol Reduced quinone |
| Hydroquinone | -1 | p-Benzenediol 1,4-Benzenediol 1,4-Dihydroxybenzene Benzene-1,4-diol Quinol 4-Hydroxyphenol |
| Hydroxylamine | 1 | NH2OH |
| Hydroxymethylbilane | 0 | |
| Hypoxanthine | 3 | Purine-6-ol |
| IDP | 1 | Inosine 5'-diphosphate Inosine diphosphate |
| Iminoaspartate | 0 | Iminoaspartic acid Iminosuccinate |
| Iminoglycine | -1 | Iminoacetic acid 2-Iminoacetate |
| IMP | -3 | Inosinic acid Inosine monophosphate Inosine 5'-monophosphate Inosine 5'-phosphate 5'-Inosinate 5'-Inosinic acid 5'-Inosine monophosphate 5'-IMP |
| Indole | 0 | 2,3-Benzopyrrole |
| Indoleglycerol phosphate | 0 | 1-C-(Indol-3-yl)glycerol 3-phosphate (3-Indolyl)-glycerol phosphate C1-(3-Indolyl)-glycerol 3-phosphate (1S,2R)-1-C-(Indol-3-yl)glycerol 3-phosphate Indole-3-glycerol phosphate |
| Isocitrate | -1 | Isocitric acid 1-Hydroxytricarballylic acid 1-Hydroxypropane-1,2,3-tricarboxylic acid |
| Isopentenyl diphosphate | -7 | Delta3-Isopentenyl diphosphate Delta3-Methyl-3-butenyl diphosphate 3-Methylbut-3-en-1-yl diphosphate |
| ITP | -2 | Inosine 5'-triphosphate Inosine triphosphate Inosine tripolyphosphate |
| Ketone | 1 | R-CO-R' |
| L-2,3-Diaminopropanoate | 1 | L-2,3-Diaminopropionate L-2,3-Diaminopropionic acid L-2,3-Diaminopropanoic acid 3-Amino-L-alanine (S)-2,3-Diaminopropanoate |
| L-2,4-Diaminobutanoate | -1 | alpha,gamma-Diaminobutyrate L-2,4-Diaminobutyrate |
| L-2-Amino-3-oxobutanoic acid | 1 | L-2-Amino-3-oxobutanoate L-2-Amino-acetoacetate (S)-2-Amino-3-oxobutanoic acid |
| L-2-Aminoadipate 6-semialdehyde | 1 | 2-Aminoadipate 6-semialdehyde L-Allysine Allysine (S)-2-Amino-6-oxohexanoate |
| L-3,4-Dihydroxybutan-2-one 4-phosphate | 0 | 1-Deoxy-L-glycero-tetrulose 4-phosphate 2-Hydroxy-3-oxobutyl phosphate |
| L-3-Aminoisobutanoate | -1 | (S)-3-Aminoisobutyrate L-3-Aminoisobutyrate (S)-3-Aminoisobutanoate (S)-3-Amino-2-methylpropanoate (S)-beta-Aminoisobutyrate |
| Lactate | 1 | Lactic acid 2-Hydroxypropanoic acid 2-Hydroxypropionic acid |
| L-Alanine | -3 | L-2-Aminopropionic acid L-alpha-Alanine |
| L-Alanyl-D-glutamate | -1 | |
| L-Alanyl-L-glutamate | 1 | |
| L-Alanyl-tRNA | 1 | L-Alanyl-tRNA(Ala) |
| L-Amino acid | 0 | L-2-Amino acid |
| L-Arginine | -2 | (S)-2-Amino-5-guanidinovaleric acid L-Arg |
| L-Arginyl-tRNA(Arg) | 1 | L-Arginyl-tRNA |
| L-Ascorbate 6-phosphate | 1 | |
| L-Asparagine | -1 | 2-Aminosuccinamic acid |
| L-Asparaginyl-tRNA(Asn) | 2 | Asn-tRNA(Asn) Asparaginyl-tRNA(Asn) |
| L-Aspartate | -10 | L-Aspartic acid 2-Aminosuccinic acid L-Asp |
| L-Aspartate 4-semialdehyde | 1 | Aspartate beta-semialdehyde L-Aspartic 4-semialdehyde |
| L-Aspartyl-tRNA(Asn) | -1 | Asp-tRNA(Asn) Aspartyl-tRNA(Asn) |
| L-Aspartyl-tRNA(Asp) | 1 | |
| L-Citrulline | 0 | 2-Amino-5-ureidovaleric acid Citrulline |
| L-Cystathionine | 1 | |
| L-Cysteine | -2 | L-2-Amino-3-mercaptopropionic acid |
| L-Cysteine-S-conjugate | -1 | S-Aryl-L-cysteine |
| L-Cysteinyl-tRNA(Cys) | 1 | |
| L-Fuculose 1-phosphate | -1 | |
| L-Glutamate | 17 | L-Glutamic acid L-Glutaminic acid Glutamate |
| L-Glutamate 5-semialdehyde | -1 | L-Glutamate gamma-semialdehyde |
| L-Glutamine | -15 | L-2-Aminoglutaramic acid |
| L-Glutamyl 5-phosphate | 2 | L-Glutamate 5-phosphate |
| L-Glutamyl-tRNA(Gln) | -1 | Glu-tRNA(Gln) Glutamyl-tRNA(Gln) |
| L-Glutamyl-tRNA(Glu) | 1 | |
| L-Histidine | -1 | (S)-alpha-Amino-1H-imidazole-4-propionic acid |
| L-Histidinol | -1 | |
| L-Histidinol phosphate | -1 | |
| L-Histidyl-tRNA(His) | 1 | |
| L-Homocysteine | -3 | L-2-Amino-4-mercaptobutyric acid Homocysteine |
| L-Homoserine | -4 | 2-Amino-4-hydroxybutyric acid |
| Linoleoyl-[glycerolipid] | 1 | (9Z,12Z)-Octadeca-9,12-dienoyl-[glycerolipid] |
| Lipoyl-AMP | 0 | |
| Lipoylprotein | -1 | H-Protein-lipoyllysine [GCSH]-N6-lipoyl-L-lysine [GcvH]-N6-lipoyl-L-lysine [Glycine cleavage system H]-N6-lipoyl-L-lysine [Glycine-cleavage complex H protein]-N6-lipoyl-L-lysine |
| L-Isoleucine | -1 | 2-Amino-3-methylvaleric acid |
| L-Isoleucyl-tRNA(Ile) | 1 | |
| LL-2,6-Diaminoheptanedioate | 1 | LL-2,6-Diaminopimelate LL-2,6-Diaminopimelic acid |
| L-Leucine | -3 | 2-Amino-4-methylvaleric acid (2S)-alpha-2-Amino-4-methylvaleric acid (2S)-alpha-Leucine |
| L-Leucyl-tRNA | 1 | L-Leucyl-tRNA(Leu) |
| L-Lysine | -2 | Lysine acid 2,6-Diaminohexanoic acid |
| L-Lysyl-tRNA | 1 | L-Lysyl-tRNA(Lys) |
| L-Methionine | 16 | Methionine L-2-Amino-4methylthiobutyric acid |
| L-Methionine (R)-S-oxide | 1 | |
| L-Methionyl-tRNA | 1 | L-Methionyl-tRNA(Met) |
| Long-chain acyl-[acyl-carrier protein] | 1 | |
| Long-chain fatty acid | -2 | Higher fatty acid |
| L-Ornithine | 0 | (S)-2,5-Diaminovaleric acid (S)-2,5-Diaminopentanoic acid (S)-2,5-Diaminopentanoate |
| L-Phenylalanine | -2 | (S)-alpha-Amino-beta-phenylpropionic acid |
| L-Phenylalanyl-tRNA(Phe) | 1 | |
| L-Proline | -3 | 2-Pyrrolidinecarboxylic acid |
| L-Prolyl-tRNA(Pro) | 1 | |
| L-Selenocysteine | -1 | |
| L-Serine | -4 | L-2-Amino-3-hydroxypropionic acid L-3-Hydroxy-alanine Serine |
| L-Seryl-tRNA(Ser) | 1 | |
| L-Threonine | -2 | 2-Amino-3-hydroxybutyric acid |
| L-Threonine O-3-phosphate | -1 | L-Threonine phosphate O-Phospho-L-threonine |
| L-Threonylcarbamoyladenylate | 0 | L-Threonylcarbamoyl-AMP TC-AMP |
| L-Threonyl-tRNA(Thr) | 1 | |
| L-Tryptophan | 0 | Tryptophan (S)-alpha-Amino-beta-(3-indolyl)-propionic acid |
| L-Tyrosine | 0 | (S)-3-(p-Hydroxyphenyl)alanine (S)-2-Amino-3-(p-hydroxyphenyl)propionic acid Tyrosine |
| L-Tyrosyl-tRNA(Tyr) | 1 | |
| L-Valine | -1 | 2-Amino-3-methylbutyric acid |
| L-Valyl-tRNA(Val) | 1 | |
| Magnesium protoporphyrin monomethyl ester | -1 | Magnesium-protoporphyrin IX 13-monomethyl ester Mg-Protoporphyrin IX 13-monomethyl ester Magnesium protoporphyrin IX 13-methyl ester |
| Malonyl-[acp] methyl ester | 1 | Malonyl-[acyl-carrier protein] methyl ester |
| Malonyl-[acyl-carrier protein] | -2 | Malonyl-[acp] |
| Malonyl-CoA | 1 | Malonyl coenzyme A |
| Maltose | -1 | Malt sugar alpha-D-Glucopyranosyl-(1->4)-D-glucopyranose |
| Maltose 6'-phosphate | 0 | |
| Manganese(2+) | -1 | Mn2+ Mn(II) |
| Manganese(3+) | 0 | Mn3+ Mn(III) |
| Mannitol | -1 | D-Mannitol |
| Membrane-derived-oligosaccharide 6-(glycerophospho)-D-glucose | 1 | |
| Membrane-derived-oligosaccharide D-glucose | -1 | |
| Menaquinol | 0 | Reduced menaquinone Vitamin K2 hydroquinone Reduced vitamin K2 |
| Menaquinone | 1 | Vitamin K2 |
| Mercaptopyruvate | -1 | 2-Oxo-3-sulfanylpropanoate 3-Mercaptopyruvic acid 3-Mercaptopyruvate |
| meso-2,6-Diaminoheptanedioate | -1 | meso-2,6-Diaminopimelate meso-2,6-Diaminopimelic acid meso-Diaminoheptanedioate |
| Methanethiol | -1 | Methylmercaptan |
| Methanol | 2 | Methyl alcohol CH3OH |
| Methionyl peptide | 1 | |
| Methyl red | 1 | o-Methyl red 2-(4-Dimethylaminophenyl)diazenylbenzoate |
| Methylglyoxal | 3 | Pyruvaldehyde Pyruvic aldehyde 2-Ketopropionaldehyde 2-Oxopropanal |
| Molybdate | -1 | |
| Molybdoenzyme molybdenum cofactor | -1 | Molybdenum cofactor |
| Molybdopterin | 0 | Pyranopterin H2Dtpp-mP |
| Monoamide of dicarboxylate | -1 | Monoamide of dicarboxylic acid |
| myo-Inositol | 1 | D-myo-Inositol 1D-myo-Inositol L-myo-Inositol 1L-myo-Inositol meso-Inositol Inositol Dambose Cyclohexitol Meat sugar Bios I |
| myo-Inositol phosphate | -1 | |
| N-(5'-Phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-D-ribosyl)-4-imidazolecarboxamide | 0 | 5-[(5-Phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide Phosphoribulosyl-formimino-AICAR-phosphate 5-[(5-Phospho-1-deoxy-D-ribulos-1-ylamino)methylideneamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide |
| N-(5-Phospho-D-ribosyl)anthranilate | -1 | N-(5-Phospho-beta-D-ribosyl)anthranilate N-(5-Phosphoribosyl)anthranilic acid |
| N-(L-Arginino)succinate | 0 | 2-(Nomega-L-Arginino)succinate L-Argininosuccinate L-Argininosuccinic acid L-Arginosuccinic acid |
| N,N'-Diacetylchitobiose 6'-phosphate | 1 | |
| N,N-Dimethyl-1,4-phenylenediamine | -1 | N,N-Dimethyl-p-phenylenediamine p-Amino-N,N-dimethylaniline |
| N-[(2S)-2-Amino-2-carboxyethyl]-L-glutamate | 0 | |
| N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole | -1 | alpha-Ribazole 5'-phosphate |
| N6-(1,2-Dicarboxyethyl)-AMP | 0 | N6-(1,2-Dicarboxyethyl)AMP Adenylosuccinate Adenylosuccinic acid |
| N6-(L-1,3-Dicarboxypropyl)-L-lysine | -1 | Saccharopine L-Saccharopine N-[(S)-5-Amino-5-carboxypentyl]-L-glutamic acid |
| N6-Acetyl-LL-2,6-diaminoheptanedioate | -1 | N2-Acetyl-LL-2,6-diaminoheptanedioate N6-Acetyl-LL-2,6-diaminopimelate N2-Acetyl-LL-2,6-diaminopimelate N6-Acetyl-L-2,6-diaminoheptanedioate N6-Acetyl-L-2,6-diaminopimelate N-Acetyl-LL-2,6-diaminoheptanedioate |
| N6-L-Threonylcarbamoyladenine in tRNA | 1 | t6A in tRNA |
| N-Acetoxyarylamine | 1 | |
| N-Acetyl-alpha-D-glucosamine 1-phosphate | 0 | |
| N-Acetyl-alpha-D-glucosaminyl-diphospho-trans,octacis-decaprenol | 1 | |
| N-Acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenol | 1 | N-Acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol |
| N-Acetyl-D-glucosamine | -1 | N-Acetylchitosamine 2-Acetamido-2-deoxy-D-glucose GlcNAc |
| N-Acetyl-D-glucosamine 6-phosphate | -1 | |
| N-Acetyl-D-glucosaminyldiphosphoundecaprenol | 0 | N-Acetyl-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol N-Acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol Lipid I |
| N-Acetyldiamine | 1 | |
| N-Acetyl-L-2-amino-6-oxopimelate | 1 | L-2-Acetamido-6-oxoheptanedioate L-2-Acetamido-6-oxopimelate |
| N-Acetyl-L-glutamate | 0 | N-Acetyl-L-glutamic acid |
| N-Acetyl-L-glutamate 5-phosphate | 2 | N-Acetyl-L-glutamyl 5-phosphate |
| N-Acetyl-L-glutamate 5-semialdehyde | 0 | 2-Acetamido-5-oxopentanoate |
| N-Acetylmuramic acid 6-phosphate | 2 | N-Acetylmuramate 6-phosphate MurNAc 6-phosphate |
| N-Acetylornithine | -2 | N2-Acetyl-L-ornithine |
| N-Acyl-D-glucosamine 6-phosphate | -1 | |
| N-Acyl-D-mannosamine 6-phosphate | 1 | |
| NAD+ | -39 | NAD Nicotinamide adenine dinucleotide DPN Diphosphopyridine nucleotide Nadide beta-NAD+ |
| NADH | 38 | DPNH Reduced nicotinamide adenine dinucleotide |
| NADP+ | -28 | NADP Nicotinamide adenine dinucleotide phosphate beta-Nicotinamide adenine dinucleotide phosphate TPN Triphosphopyridine nucleotide beta-NADP+ |
| NADPH | 29 | TPNH Reduced nicotinamide adenine dinucleotide phosphate |
| N-Carbamoyl-L-aspartate | 2 | |
| NDP | 2 | Nucleoside diphosphate Nucleoside 5'-diphosphate |
| N-D-Ribosylpurine | -2 | Purine nucleoside Purine ribonucleoside |
| N-Formimino-L-glutamate | 0 | N-Formimidoyl-L-glutamate |
| N-Hydroxyarylamine | -1 | |
| Ni(II)-pyridinium-3,5-bisthiocarboxylate mononucleotide | -1 | |
| Nickel(2+) | 1 | Ni2+ Ni(II) |
| Nicotinamide D-ribonucleotide | -1 | NMN Nicotinamide mononucleotide Nicotinamide ribonucleotide Nicotinamide nucleotide beta-Nicotinamide D-ribonucleotide beta-Nicotinamide ribonucleotide beta-Nicotinamide mononucleotide |
| Nicotinate | 0 | Nicotinic acid Niacin 3-Pyridinecarboxylic acid |
| Nicotinate D-ribonucleotide | -1 | beta-Nicotinate D-ribonucleotide Nicotinate ribonucleotide Nicotinic acid ribonucleotide |
| Nitrate | 1 | Nitric acid |
| Nitric oxide | -1 | NO Nitrogen monoxide |
| Nitrite | 3 | |
| N-Substituted amino acid | 1 | |
| N-Substituted aminoacyl-tRNA | -1 | |
| N-Succinyl-2-L-amino-6-oxoheptanedioate | 1 | N-Succinyl-L-2-amino-6-oxoheptanedioate N-Succinyl-L-2-amino-6-oxopimelate N-Succinyl-2-amino-6-oxo-L-pimelic acid N-Succinyl-epsilon-keto-L-aminopimelic acid (S)-2-(Succinylamino)-6-oxoheptanedioate |
| N-Succinyl-LL-2,6-diaminoheptanedioate | -2 | N-Succinyl-LL-2,6-diaminopimelate N-Succinyl-L-2,6-diaminoheptanedioate N-Succinyl-L-2,6-diaminopimelate |
| Nucleoside 3',5'-bisphosphate | -1 | |
| Nucleoside 3'-phosphate | 1 | |
| Nucleoside 5'-phosphate | 1 | |
| Nucleoside triphosphate | -2 | NTP Nucleoside 5'-triphosphate |
| O-Acetyl-L-homoserine | 0 | O-Acetylhomoserine |
| O-Acetyl-L-serine | -1 | O3-Acetyl-L-serine |
| Octanoyl-[acp] | -1 | Octanoyl-[acyl-carrier protein] |
| O-D-Alanyl-poly(ribitol phosphate) | 1 | |
| O-Phospho-D-serine | -1 | D-O-Phosphoserine |
| O-Phospho-L-homoserine | 0 | |
| O-Phospho-L-serine | -1 | L-O-Phosphoserine 3-Phosphoserine Dexfosfoserine 3-Phospho-L-serine |
| Orotate | 2 | Orotic acid Uracil-6-carboxylic acid |
| Orotidine 5'-phosphate | -2 | Orotidylic acid |
| Orthophosphate | 85 | Phosphate Phosphoric acid Orthophosphoric acid |
| O-Succinyl-L-homoserine | 0 | O4-Succinyl-L-homoserine O-Succinylhomoserine |
| Oxalate | -1 | Oxalic acid Ethanedioic acid |
| Oxaloacetate | 1 | Oxalacetic acid Oxaloacetic acid 2-Oxobutanedioic acid 2-Oxosuccinic acid keto-Oxaloacetate |
| Oxalosuccinate | 0 | Oxalosuccinic acid |
| Oxalureate | 1 | Oxaluric acid Monooxalylurea Oxalurate N-Carbamoyl-2-oxoglycine |
| Oxidized [2Fe-2S] ferredoxin | 2 | |
| Oxidized azurin | -1 | Azurinox |
| Oxidized ferredoxin | -2 | Oxidized ferredoxin [iron-sulfur] cluster |
| Oxidized flavodoxin | 0 | |
| Oxygen | -21 | O2 |
| Pantetheine 4'-phosphate | -1 | 4'-Phosphopantetheine Phosphopantetheine D-Pantetheine 4'-phosphate |
| Pantothenate | 0 | Pantothenic acid (R)-Pantothenate |
| p-Benzoquinone | 1 | Quinone Chinone 2,5-Cyclohexadiene-1,4-dione 1,4-Benzoquinone |
| Peptidoglycan-D-glucosamine | 1 | Deacetylated peptidoglycan |
| Peptidylproline (omega=0) | 1 | |
| Peptidylproline (omega=180) | -1 | |
| Phenol | 1 | Benzenol Hydroxybenzene Phenic acid Phenylic acid |
| Phenylpyruvate | 1 | Phenylpyruvic acid alpha-Ketohydrocinnamic acid keto-Phenylpyruvate 3-Phenyl-2-oxopropanoate 2-Oxo-3-phenylpropanoate |
| Phosphatidate | 1 | Phosphatidic acid 1,2-Diacyl-sn-glycerol 3-phosphate 3-sn-Phosphatidate |
| Phosphatidylcholine | -1 | Lecithin Phosphatidyl-N-trimethylethanolamine 1,2-Diacyl-sn-glycero-3-phosphocholine Choline phosphatide 3-sn-Phosphatidylcholine |
| Phosphatidylethanolamine | 0 | (3-Phosphatidyl)ethanolamine (3-Phosphatidyl)-ethanolamine Cephalin O-(1-beta-Acyl-2-acyl-sn-glycero-3-phospho)ethanolamine 1-Acyl-2-acyl-sn-glycero-3-phosphoethanolamine L-1-Phosphatidylethanolamine |
| Phosphatidylglycerol | -2 | 3-(3-sn-Phosphatidyl)glycerol 3(3-Phosphatidyl-)glycerol PtdGro |
| Phosphatidylglycerophosphate | 1 | 1-(3-sn-Phosphatidyl)-sn-glycerol 3-phosphate 3-(3-Phosphatidyl)-D-glycerol 1-phosphate 1,2-Diacyl-sn-glycero-3-phospho-sn-glycerol 3'-phosphate |
| Phosphatidyl-N-dimethylethanolamine | 1 | |
| Phosphatidyl-N-methylethanolamine | 0 | |
| Phosphatidylserine | -1 | Phosphatidyl-L-serine 1,2-Diacyl-sn-glycerol 3-phospho-L-serine 3-O-sn-Phosphatidyl-L-serine O3-Phosphatidyl-L-serine L-1-Phosphatidylserine |
| Phosphoenolpyruvate | -1 | Phosphoenolpyruvic acid PEP |
| Phosphonoacetaldehyde | 1 | 2-Phosphonoacetaldehyde 2-Oxoethylphosphonate |
| Phosphoprotein | 1 | |
| Phosphoribosyl-AMP | 0 | N1-(5-Phospho-D-ribosyl)-AMP 1-(5-Phosphoribosyl)-AMP 1-(5-Phospho-beta-D-ribosyl)-AMP |
| Phytoceramide | -1 | Ceramide II N-Acyl-4-hydroxysphinganine (4R)-4-Hydroxysphinganine ceramide |
| Pimeloyl-[acyl-carrier protein] | 0 | Pimeloyl-[acp] Pimelyl-[acyl-carrier protein] Pimelyl-[acp] 7-Hydroxy-7-oxoheptanoyl-[acyl-carrier protein] |
| Pimeloyl-[acyl-carrier protein] methyl ester | -1 | Pimeloyl-[acp] methyl ester Pimelyl-[acyl-carrier protein] methyl ester Pimelyl-[acp] methyl ester |
| Poly(ribitol phosphate) | -1 | Poly-1,5-ribitol phosphate (Ribitol phosphate)n (Ribitol phosphate)n+1 |
| Polysulfide | 1 | (Sulfide)n Polysulfane |
| Porphobilinogen | 0 | |
| Precorrin 1 | 0 | |
| Precorrin 2 | -1 | Dihydrosirohydrochlorin |
| Precorrin 3A | 1 | |
| Precorrin 4 | -1 | |
| Precorrin 5 | 1 | |
| Precorrin 6X | 1 | Precorrin 6A |
| Precorrin 6Y | -2 | Precorrin 6B |
| Precorrin 8X | 0 | Precorrin 8 Precorrin-8X |
| Precursor Z | 0 | Cyclic pyranopterin monophosphate Cyclic pyranopterin phosphate cPMP |
| Prenylated FMNH2 | 1 | Reduced prFMN |
| Prephenate | -1 | Prephenic acid |
| Primary alcohol | -1 | 1-Alcohol |
| Procollagen L-proline | -1 | [Procollagen]-L-proline |
| Procollagen trans-4-hydroxy-L-proline | 1 | |
| Propanoyl-CoA | 1 | Propionyl-CoA Propionyl coenzyme A |
| Protein | -1 | |
| Protein glutamate | 1 | Protein L-glutamate |
| Protein glutamate methyl ester | 0 | Protein L-glutamate methyl ester Protein L-glutamate O5-methyl ester |
| Protein glutamine | -1 | Protein L-glutamine |
| Protein histidine | 9 | Protein L-histidine [Protein]-L-histidine |
| Protein lysine | 1 | Peptidyl-L-lysine [Protein]-L-lysine |
| Protein N(omega)-phospho-L-arginine | 0 | [Protein]-N(omega)-phospho-L-arginine |
| Protein N(pi)-phospho-L-histidine | -10 | Protein N-pros-phospho-L-histidine Protein N-pros-phosphohistidine Protein Npi-phospho-L-histidine |
| Protein N6-(lipoyl)lysine | 2 | [Lipoyl-carrier protein]-N6-(lipoyl)lysine |
| Protein S-methyl-L-cysteine | 1 | |
| Protein tyrosine | 1 | [Protein]-L-tyrosine |
| Protein tyrosine phosphate | -1 | [Protein]-L-tyrosine phosphate |
| Protein-L-arginine | 1 | Peptide L-arginine |
| Pseudouridine | -1 | |
| Pseudouridine 5'-phosphate | 2 | |
| Psicoselysine | 1 | N6-(D-Psicosyl)-L-lysine |
| Purine | 2 | Purine base |
| Purine deoxyribonucleoside | -1 | Purine 2'-deoxyribonucleoside |
| Putrescine | 0 | 1,4-Butanediamine 1,4-Diaminobutane Tetramethylenediamine Butane-1,4-diamine |
| Pyridinium-3,5-bisthiocarboxylate mononucleotide | 1 | P2TMN Pyridin-1-ium-3,5-bisthiocarboxylate mononucleotide |
| Pyridoxal | -1 | |
| Pyridoxal phosphate | 2 | Pyridoxal 5'-phosphate Pyridoxal 5-phosphate PLP |
| Pyruvate | 9 | Pyruvic acid 2-Oxopropanoate 2-Oxopropanoic acid Pyroracemic acid |
| Quercetin | -1 | 3,3',4,5,7-Pentahydroxyflavone 3,5,7,3',4'-Pentahydroxyflavone |
| Quinolinate | 2 | Pyridine-2,3-dicarboxylate Quinolinic acid 2,3-Pyridinedicarboxylic acid |
| Quinone | -11 | |
| RCl | 1 | |
| Reduced [2Fe-2S] ferredoxin | -2 | |
| Reduced acceptor | -1 | AH2 Hydrogen-donor Donor |
| Reduced azurin | 1 | Azurinred |
| Reduced electron-transferring flavoprotein | 1 | Reduced electron-transfer flavoprotein |
| Reduced ferredoxin | 2 | Reduced ferredoxin [iron-sulfur] cluster |
| Reduced flavodoxin | 0 | |
| Reduced FMN | -3 | FMNH2 |
| Riboflavin | 0 | Lactoflavin 7,8-Dimethyl-10-ribitylisoalloxazine Vitamin B2 |
| Ribonucleoside | 2 | |
| Ribonucleoside diphosphate | 1 | Ribonucleoside 5'-diphosphate |
| Ribonucleoside triphosphate | -1 | Ribonucleoside 5'-triphosphate |
| Rifampicin | -1 | Rifampin |
| RNA | 1 | RNAn RNAn+1 RNA(linear) (Ribonucleotide)n (Ribonucleotide)m (Ribonucleotide)n+m Ribonucleic acid |
| RNA 2'-terminal-phosphate | 1 | (Ribonucleotide)n-2'-phosphate |
| ROH | 2 | |
| ROOH | -1 | Hydroperoxide |
| S-(2-Hydroxyacyl)glutathione | -1 | |
| S-Adenosyl-L-homocysteine | 41 | S-Adenosylhomocysteine |
| S-Adenosyl-L-methionine | -54 | S-Adenosylmethionine AdoMet SAM |
| S-Adenosylmethioninamine | 0 | (5-Deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium (5-Deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium cation S-Adenosyl-(5')-3-methylthiopropylamine S-Adenosyl 3-(methylthio)propylamine S-Adenosyl 3-(methylsulfanyl)propylamine Decarboxy-AdoMet |
| scyllo-Inositol | -1 | Scyllitol |
| Secondary alcohol | -1 | R-CHOH-R' |
| Sedoheptulose 7-phosphate | -2 | D-Sedoheptulose 7-phosphate D-altro-Heptulose 7-phosphate altro-Heptulose 7-phosphate |
| Semiquinone | 1 | Semiquinone radical Semidione Benzosemiquinone |
| Shikimate | -2 | Shikimic acid 3,4,5-Trihydroxy-1-cyclohexenecarboxylic acid |
| Short-chain acyl-CoA | -1 | |
| Short-chain trans-2,3-dehydroacyl-CoA | 1 | |
| S-Inosyl-L-homocysteine | 1 | |
| Siroheme | -1 | |
| Sirohydrochlorin | 2 | |
| S-Methyl-5-thio-D-ribose 1-phosphate | 0 | S-Methyl-5-thio-alpha-D-ribose 1-phosphate S-Methyl-5-thio-5-deoxy-D-ribose 1-phosphate |
| S-Methyl-5-thio-D-ribulose 1-phosphate | 0 | 5-(Methylsulfanyl)-D-ribulose 1-phosphate |
| sn-Glycerol 1-phosphate | 1 | sn-Gro-1-P L-Glycerol 1-phosphate |
| sn-Glycerol 3-phosphate | -2 | Glycerophosphoric acid D-Glycerol 1-phosphate |
| Sorbitol 6-phosphate | 1 | D-Sorbitol 6-phosphate D-Glucitol 6-phosphate |
| Spermidine | 1 | N-(3-Aminopropyl)-1,4-butane-diamine |
| Sporulenol | -1 | (1R,2R,4aS,4bR,6aS,10aS,10bR,12aS)-2,4b,7,7,10a,12a-Hexamethyl-1-[(3R)-3-(4-methylcyclohexa-1,4-dien-1-yl)butyl]octadecahydrochrysen-2-ol |
| S-Ribosyl-L-homocysteine | 1 | S-D-Ribosyl-L-homocysteine Ribose-5-S-homocysteine S-Ribosylhomocysteine S-(5-Deoxy-D-ribos-5-yl)-L-homocysteine |
| Substituted beta-amino acid | 1 | |
| Succinate | 3 | Succinic acid Butanedionic acid Ethylenesuccinic acid |
| Succinate semialdehyde | 1 | Succinic semialdehyde 4-Oxobutanoate |
| Succinyl-CoA | 0 | Succinyl coenzyme A |
| Sulfate | -1 | Sulfuric acid |
| Sulfite | 0 | Sulfurous acid |
| Sulfur-carrier protein | 2 | [Sulfur-carrier protein] [Sulfur-carrier protein]-Gly-Gly |
| Superoxide | -1 | O2.- Superoxide anion O2- |
| Tetrahydrofolate | 5 | 5,6,7,8-Tetrahydrofolate Tetrahydrofolic acid THF (6S)-Tetrahydrofolate (6S)-Tetrahydrofolic acid (6S)-THFA |
| Tetrahydropteridine | -1 | 5,6,7,8-Tetrahydropteridine |
| Tetrahydropteroyltri-L-glutamate | 1 | (6S)-H4PteGlu3 |
| Tetraprenyl-beta-curcumene | 2 | |
| Tetrathionate | 1 | Tetrathionic acid |
| THF-polyglutamate | 0 | Tetrahydropteroyl-[gamma-Glu]n Tetrahydrofolyl-[Glu](n-1) (6S)-H4PteGlu(n) Tetrahydropteroyl-[gamma-Glu]n+1 Tetrahydrofolyl-[Glu](n) |
| Thiamin diphosphate | 1 | Thiamine diphosphate Thiamin pyrophosphate TPP ThPP |
| Thiamin monophosphate | 0 | Thiamine monophosphate Thiamin phosphate Thiamine phosphate TMP |
| Thiamine | -1 | Thiamin Vitamin B1 Aneurin Antiberiberi factor |
| Thiocarboxy-[sulfur-carrier protein] | -2 | [Sulfur-carrier protein]-Gly-NH-CH2-C(O)SH |
| Thiocyanate | 1 | Thiocyanic acid |
| Thiol | 1 | Mercaptan |
| Thioredoxin | 1 | Reduced thioredoxin |
| Thioredoxin disulfide | -1 | Oxidized thioredoxin Thioredoxin sulfide |
| Thiosulfate | -2 | Hyposulfite |
| Thymidine | -2 | Deoxythymidine |
| Thymine | 1 | 5-Methyluracil |
| trans,trans-Farnesyl diphosphate | -3 | Farnesyl diphosphate Farnesyl pyrophosphate 2-trans,6-trans-Farnesyl diphosphate (2E,6E)-Farnesyl diphosphate |
| trans-2,3-Dehydroacyl-[acyl-carrier protein] | 4 | trans-2-Enoyl-[acyl-carrier protein] |
| trans-2,3-Dehydroacyl-CoA | 0 | trans-2-Enoyl-CoA trans-2,3-Didehydroacyl-CoA trans-Didehydroacyl-CoA (2E)-2-Enoyl-CoA |
| Triacylglycerol | -1 | Triglyceride |
| Triglucosyldiacylglycerol | 1 | 1,2-Diacyl-3-O-[beta-D-glucopyranosyl-(1->6)-beta-D-glucopyranosyl-(1->6)-O-beta-D-glucopyranosyl]-sn-glycerol |
| Triphosphate | 3 | Triphosphoric acid Tripolyphosphate Inorganic triphosphate |
| tRNA | 2 | tRNA(n) tRNA(n+1) transfer RNA |
| tRNA adenine | -1 | Adenosine in tRNA |
| tRNA precursor | -1 | |
| tRNA uridine | -1 | Uracil in tRNA |
| tRNA with a 3' CC end | 0 | tRNA with a 3' CC |
| tRNA with a 3' CCA end | 1 | |
| tRNA with a 3' cytidine | -1 | |
| tRNA(Ala) | 0 | |
| tRNA(Arg) | -1 | |
| tRNA(Asn) | -1 | |
| tRNA(Asp) | -1 | |
| tRNA(Cys) | -1 | |
| tRNA(Gln) | -1 | |
| tRNA(Glu) | -1 | |
| tRNA(Gly) | -1 | |
| tRNA(His) | -1 | |
| tRNA(Ile) | -1 | |
| tRNA(Leu) | -1 | |
| tRNA(Lys) | -1 | |
| tRNA(Met) | -1 | |
| tRNA(Phe) | -1 | |
| tRNA(Pro) | -1 | |
| tRNA(Ser) | -1 | |
| tRNA(Thr) | -1 | |
| tRNA(Trp) | -1 | |
| tRNA(Tyr) | -1 | |
| tRNA(Val) | -1 | |
| Ubiquinol | 1 | QH2 CoQH2 Ubiquinol-n |
| Ubiquinone | -1 | Coenzyme Q CoQ |
| UDP | 4 | Uridine 5'-diphosphate |
| UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-glucuronate | 1 | UDP-alpha-D-GlcNAc3NAcA UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-glucuronic acid |
| UDP-2-acetamido-3-amino-2,3-dideoxy-alpha-D-glucuronate | -1 | |
| UDP-D-xylose | 1 | UDP-xylose UDP-alpha-D-xylose |
| UDP-glucose | -2 | UDPglucose UDP-D-glucose Uridine diphosphate glucose UDP-alpha-D-glucose |
| UDP-glucuronate | 0 | UDPglucuronate UDP-D-glucuronate UDP-alpha-D-glucuronate |
| UDPMurNAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala) | 1 | UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine |
| UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine | 2 | UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine UDP-N-acetylglucosamine-3-O-pyruvateether UDP-N-acetylglucosamine enolpyruvate UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine |
| UDP-N-acetyl-alpha-D-glucosamine | -4 | UDP-N-acetyl-D-glucosamine UDP-N-acetylglucosamine |
| UDP-N-acetyl-D-mannosamine | -1 | UDP-N-acetyl-alpha-D-mannosamine |
| UDP-N-acetyl-D-mannosaminouronate | 1 | UDP-N-acetyl-2-amino-2-deoxy-D-mannuronate UDP-N-acetyl-D-mannosaminuronic acid UDP-N-acetyl-alpha-D-mannosaminuronate |
| UDP-N-acetylmuramate | -2 | UDP-N-acetyl-alpha-D-muramate UDP-N-acetylmuramic acid UDP-MurNAc |
| UDP-N-acetylmuramoyl-L-alanine | 0 | UDP-N-acetyl-alpha-D-muramoyl-L-alanine |
| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate | 0 | UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate |
| UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysine | -1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-L-lysine |
| UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimelate | 1 | UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diamino-heptanedioate |
| UDP-sugar | -1 | UDP-monosaccharide |
| UMP | 4 | Uridylic acid Uridine monophosphate Uridine 5'-monophosphate 5'Uridylic acid |
| Undecaprenol | -1 | |
| Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine | -1 | GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol GlcNAc-(1->4)-MurNAc(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol beta-D-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphospho-ditrans,octacis-undecaprenol |
| Uracil | 1 | |
| Urea | 2 | Carbamide |
| Uridine | -1 | |
| Urocanate | 3 | Urocanic acid |
| Uroporphyrinogen III | 0 | |
| UTP | -2 | Uridine 5'-triphosphate Uridine triphosphate |
| Water | -123 | Water |
| Xanthine | 2 | |
| Xanthosine 5'-phosphate | 0 | Xanthylic acid XMP (9-D-Ribosylxanthine)-5'-phosphate |
| XDP | 1 | Xanthosine 5'-pyrophosphate Xanthosine 5'-diphosphate |
| XTP | -2 | Xanthosine 5'-triphosphate |
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