National Library of Medicine Citations for Autism

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low.

Pseudomonadota ⬆️ ⬆️ ⬇️
Shewanellaceae ⬇️
Shewanella ⬇️
Actinobacillus ⬆️
Haemophilus ⬆️ ⬇️ ⬇️
Haemophilus parainfluenzae ⬇️
Moraxellaceae ⬆️
Acinetobacter ⬆️
Acinetobacter rhizosphaerae ⬆️
Acinetobacter johnsonii ⬆️
Thiotrichaceae ⬇️
Thiothrix ⬇️
Proteus mirabilis ⬇️
Enterobacteriaceae ⬆️ ⬆️ ⬆️ ⬆️ ⬇️
Klebsiella ⬇️
Klebsiella pneumoniae ⬆️
Citrobacter ⬆️ ⬇️
Enterobacter ⬆️ ⬆️
Enterobacter cloacae ⬇️
Escherichia ⬆️ ⬇️ ⬇️
Shigella ⬆️ ⬇️ ⬇️
Alphaproteobacteria ⬆️
Caulobacterales ⬇️
Caulobacteraceae ⬇️
Enhydrobacter ⬆️
Methylobacteriaceae ⬆️
Devosia ⬇️
Phyllobacterium ⬆️
Betaproteobacteria ⬇️
Neisseria ⬆️
Burkholderia ⬆️
Ralstonia ⬆️ ⬇️
Alcaligenaceae ⬆️
Sutterellaceae ⬆️ ⬆️
Sutterella ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬇️
Parasutterella ⬇️
Victivallales ⬆️
Verrucomicrobiota ⬇️ ⬇️
Akkermansia ⬆️ ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️
Akkermansia muciniphila ⬆️ ⬇️ ⬇️ ⬇️ ⬇️
Coraliomargarita akajimensis ⬇️
Rhodothermus ⬇️
Bacteroidota ⬆️ ⬆️ ⬇️
Chryseobacterium ⬆️
Sphingobacterium shayense ⬇️
Sphingobacterium bambusae ⬇️
Olivibacter ⬇️
Bacteroidia ⬆️
Bacteroidales ⬇️
Rikenellaceae ⬆️
Alistipes ⬆️ ⬆️ ⬇️ ⬇️ ⬇️
Porphyromonas canis ⬇️
Prevotellaceae ⬇️ ⬇️
Segatella copri ⬆️ ⬇️
Hoylesella timonensis ⬇️
Paraprevotella ⬇️
Prevotella ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Odoribacter ⬆️ ⬆️
Odoribacter denticanis ⬇️
Butyricimonas ⬆️
Coprobacter ⬆️
Barnesiella ⬆️ ⬆️ ⬆️
Dysgonomonas wimpennyi ⬇️
Parabacteroides ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️
Bacteroides ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Bacteroides sp. ⬇️
Bacteroides fragilis ⬇️
Bacteroides stercorirosoris ⬇️
Phocaeicola vulgatus ⬆️ ⬆️ ⬆️ ⬇️
Amoebophilaceae ⬇️
Candidatus Amoebophilus ⬇️
Candidatus Amoebophilus asiaticus ⬇️
Hymenobacteraceae ⬇️
Hymenobacter ⬇️
Hymenobacter xinjiangensis ⬇️
Bacillota ⬇️ ⬇️ ⬇️ ⬇️
Finegoldia magna ⬇️
Peptoniphilus methioninivorax ⬇️
Anaerococcus ⬆️
Ezakiella ⬇️
Eubacteriales ⬆️
Lachnospiraceae ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Eisenbergiella ⬇️ ⬇️
Lachnoclostridium ⬆️ ⬇️
Tyzzerella ⬇️
Agathobacter rectalis ⬇️
Dorea ⬆️ ⬆️ ⬆️ ⬆️ ⬇️
Anaerostipes ⬇️ ⬇️
Anaerostipes caccae ⬆️
[Ruminococcus] gnavus ⬆️
[Ruminococcus] torques ⬆️
Enterocloster clostridioformis ⬆️
Enterocloster bolteae ⬆️ ⬆️
Lachnospira ⬇️
Lachnospira eligens ⬇️ ⬇️
Lachnospiraceae incertae sedis ⬆️
Coprococcus ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Pseudobutyrivibrio xylanivorans ⬇️
Blautia ⬇️ ⬇️ ⬇️ ⬇️
Blautia coccoides ⬇️
Butyrivibrio proteoclasticus ⬇️
Roseburia ⬆️ ⬆️ ⬇️ ⬇️
Peptostreptococcus ⬆️
Romboutsia ilealis ⬆️
Intestinibacter ⬆️
Intestinibacter bartlettii ⬆️ ⬆️
Clostridioides difficile ⬆️ ⬆️
Eubacteriaceae ⬆️
Pseudoramibacter ⬇️
Eubacterium ⬇️ ⬇️ ⬇️ ⬇️
Oscillospiraceae ⬆️ ⬆️
Oscillospira ⬆️ ⬆️ ⬇️
Oscillospira guilliermondii ⬇️
Ruminococcus ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️
Ruminiclostridium ⬆️
Ruminiclostridium cellulolyticum ⬆️
Ruminiclostridium cellobioparum ⬇️
Ruminiclostridium cellobioparum subsp. termitidis ⬇️
Faecalibacterium ⬆️ ⬆️ ⬆️ ⬇️
Faecalibacterium prausnitzii ⬇️ ⬇️
Thermoclostridium caenicola ⬇️
Pseudoclostridium ⬇️
Pseudoclostridium thermosuccinogenes ⬇️
Anaerotruncus ⬇️
[Clostridium] leptum ⬇️
[Eubacterium] siraeum ⬇️
Flavonifractor ⬇️ ⬇️ ⬇️
Alkaliphilus crotonatoxidans ⬇️
Sarcina ⬆️ ⬆️ ⬆️ ⬆️
Clostridium ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️ ⬇️
Clostridium botulinum ⬆️
Clostridium cellulovorans ⬆️
Clostridium perfringens ⬆️ ⬆️ ⬆️ ⬆️
Hathewaya ⬇️
Hathewaya histolytica ⬆️ ⬆️ ⬆️ ⬇️
Caloramator ⬆️ ⬆️
Butyricicoccus ⬇️
Butyricicoccus pullicaecorum ⬇️
Tindallia magadiensis ⬇️
Clostridiales Family XVI. Incertae Sedis ⬇️
Carboxydocella ⬇️
Carboxydocella ferrireducens ⬇️
Symbiobacteriaceae ⬇️
Caldicellulosiruptor ⬇️
Erysipelotrichaceae ⬆️ ⬆️ ⬆️ ⬇️
Erysipelothrix muris ⬇️
Turicibacter ⬆️ ⬇️
Acidaminococcaceae ⬇️
Phascolarctobacterium ⬆️ ⬆️
Phascolarctobacterium succinatutens ⬇️
Acidaminococcus ⬇️
Acidaminococcus fermentans ⬇️
Veillonellaceae ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Veillonella ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Dialister ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Dialister invisus ⬇️
Megasphaera ⬆️ ⬆️
Selenomonadales ⬇️
Propionispora ⬇️
Propionispora hippei ⬇️
Megamonas ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️
Megamonas funiformis ⬆️
Anaerovibrio ⬇️
Anaerovibrio lipolyticus ⬇️
Selenomonas ⬇️
Selenomonas infelix ⬇️
Bacillus ⬆️ ⬆️
Amphibacillus ⬆️
Brochothrix ⬇️
Brochothrix thermosphacta ⬇️
Planifilum ⬇️
Planifilum fimeticola ⬇️
Staphylococcus ⬆️
Streptococcus ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Streptococcus mutans ⬆️
Abiotrophia ⬆️
Lactobacillaceae ⬆️
Lactobacillus ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Lacticaseibacillus rhamnosus ⬇️
Weissella ⬇️
Enterococcus ⬇️ ⬇️
Enterococcus faecalis ⬇️
Enterococcus gallinarum ⬇️
Tetragenococcus doogicus ⬇️
Cyanobacteriota ⬆️
Nostocaceae ⬇️
Aphanizomenonaceae ⬇️
Dolichospermum ⬇️
Oscillatoriaceae ⬇️
Actinomycetota ⬆️ ⬇️ ⬇️
Actinomyces ⬆️ ⬆️
Bifidobacteriaceae ⬇️
Bifidobacterium ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Bifidobacterium adolescentis ⬇️
Bifidobacterium angulatum ⬆️
Bifidobacterium catenulatum ⬆️
Bifidobacterium catenulatum subsp. kashiwanohense ⬆️
Bifidobacterium longum ⬇️
Bifidobacterium thermacidophilum ⬆️
Bifidobacterium pseudocatenulatum ⬆️
Bifidobacterium boum ⬆️
Corynebacterium ⬆️ ⬆️ ⬆️
Corynebacterium durum ⬆️
Adlercreutzia ⬇️
Adlercreutzia equolifaciens ⬇️
Eggerthella sinensis ⬇️
Eggerthella lenta ⬆️
Collinsella ⬆️ ⬆️ ⬆️ ⬆️ ⬆️
Senegalimassilia ⬆️
Senegalimassilia anaerobia ⬆️
Nitriliruptoria ⬇️
Euzebyales ⬇️
Euzebyaceae ⬇️
Euzebya ⬇️
Euzebya tangerina ⬇️
Mycoplasmatota ⬆️
Acholeplasma ⬇️
Bilophila ⬇️ ⬇️ ⬇️ ⬇️
Bilophila wadsworthia ⬇️
Desulfovibrio ⬆️ ⬆️ ⬆️ ⬆️ ⬆️
Desulfovibrio intestinalis ⬆️
Desulfovibrio piger ⬆️
Spirochaeta thermophila ⬇️
Campylobacter jejuni ⬇️
Fusobacteriota ⬇️
Fusobacteriia ⬇️
Leptotrichia ⬆️
Cetobacterium ⬆️
Fusobacterium ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬆️
Acidobacteriota ⬆️ ⬆️
Chloracidobacterium ⬇️
Chloracidobacterium thermophilum ⬇️
Terriglobia ⬆️ ⬆️
Bacillus ⬆️ ⬆️
Candida ⬆️ ⬆️

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