National Library of Medicine Citations for Autoimmune Disease

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

AI Engines For more Details: PerplexityKagi LabsYou

Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low.

Luteibacter ⬇️
Luteibacter anthropi ⬇️
Shewanellaceae ⬇️
Shewanella ⬇️
Thiotrichaceae ⬇️
Thiothrix ⬇️
Stutzerimonas xanthomarina ⬆️
Yersiniaceae ⬇️
Serratia ⬇️
Escherichia ⬇️
Kluyvera ⬆️
Kluyvera georgiana ⬆️
Novispirillum ⬇️
Rickettsiales ⬇️
Limnobacter ⬇️
Limnobacter litoralis ⬇️
Alcaligenaceae ⬇️
Parasutterella ⬆️
Parasutterella excrementihominis ⬆️
Bilophila ⬇️
Bilophila wadsworthia ⬇️
Cystobacterineae ⬆️
Desulfuromonadales ⬇️
Desulfuromonadaceae ⬇️
Lentisphaerota ⬆️
Lentisphaeria ⬆️
Victivallales ⬆️
Victivallaceae ⬆️
Victivallis ⬆️
Victivallis vadensis ⬆️
Melioribacteraceae ⬆️
Melioribacter ⬆️
Melioribacter roseus ⬆️
Flavobacterium ⬆️
Gillisia ⬇️
Alistipes obesi ⬆️
Alistipes finegoldii ⬆️
Alistipes shahii ⬆️
Porphyromonas gingivalis ⬆️
Alloprevotella ⬆️
Alloprevotella rava ⬆️
Hoylesella oralis ⬆️
Segatella baroniae ⬆️
Prevotella brevis ⬆️
Butyricimonas faecihominis ⬆️
Dysgonomonas wimpennyi ⬇️
Parabacteroides faecis ⬆️
Parabacteroides goldsteinii ⬇️
Parabacteroides johnsonii ⬇️
Bacteroides reticulotermitis ⬆️
Bacteroides denticanum ⬇️
Bacteroides helcogenes ⬆️
Bacteroides pyogenes ⬆️
Bacteroides stercorirosoris ⬇️
Hymenobacteraceae ⬇️
Hymenobacter ⬇️
unclassified Peptoniphilus ⬆️
Peptoniphilus coxii ⬇️
Proteinivoraceae ⬇️
Lachnobacterium ⬇️
[Clostridium] symbiosum ⬆️
Lachnoclostridium phytofermentans ⬆️
Anaerocolumna ⬆️
Anaerocolumna aminovalerica ⬆️
Anaerostipes caccae ⬆️
Mediterraneibacter ⬇️
[Ruminococcus] gnavus ⬇️
[Ruminococcus] lactaris ⬆️
Hespellia ⬆️
Hespellia porcina ⬆️
Oribacterium sinus ⬇️
Pseudobutyrivibrio xylanivorans ⬇️
unclassified Blautia ⬆️
Blautia sp. YHC-4 ⬆️
Blautia stercoris ⬆️
Robinsoniella peoriensis ⬆️
Anaerosporobacter mobilis ⬆️
Cellulosilyticum ⬆️
Roseburia intestinalis ⬆️
Roseburia inulinivorans ⬆️
Peptoclostridium ⬆️
Clostridioides ⬆️
Clostridioides difficile ⬆️
[Clostridium] thermoalcaliphilum ⬇️
Eubacterium coprostanoligenes ⬆️
Peptococcus ⬇️
Pseudoflavonifractor ⬆️
Pseudoflavonifractor capillosus ⬆️
Ruminococcus champanellensis ⬆️
Ruminiclostridium cellobioparum ⬇️
Ruminiclostridium cellobioparum subsp. termitidis ⬇️
Thermoclostridium ⬇️
Thermoclostridium caenicola ⬇️
Acetivibrio alkalicellulosi ⬇️
Oscillibacter ⬆️
Oscillibacter ruminantium ⬆️
Oscillospiraceae incertae sedis ⬆️
[Eubacterium] siraeum ⬆️
[Clostridium] viride ⬆️
[Clostridium] methylpentosum ⬆️
Clostridium frigoris ⬇️
Lactonifactor ⬆️
Lactonifactor longoviformis ⬆️
Caloramator mitchellensis ⬇️
Natronincola ⬇️
Natronincola peptidivorans ⬇️
Intestinimonas butyriciproducens ⬆️
[Eubacterium] brachy ⬆️
Clostridiales Family XVI. Incertae Sedis ⬇️
Carboxydocella ⬇️
Syntrophomonadaceae ⬇️
Dielma ⬆️
Dielma fastidiosa ⬆️
Veillonella criceti ⬇️
unclassified Veillonella ⬆️
Veillonella sp. 2011_Oral_VSA_D3 ⬆️
Dialister invisus ⬇️
Dialister propionicifaciens ⬆️
Megasphaera hominis ⬇️
Negativicoccus succinicivorans ⬇️
Propionispora ⬇️
Propionispora hippei ⬇️
Pectinatus ⬇️
Pectinatus cerevisiiphilus ⬇️
Brochothrix ⬇️
Bacillales incertae sedis ⬇️
Thermicanus ⬇️
Gemellaceae ⬇️
Gemella ⬇️
Gemella cuniculi ⬇️
Streptococcus didelphis ⬆️
unclassified Streptococcus ⬆️
Limosilactobacillus ⬆️
Limosilactobacillus fermentum ⬆️
Nostocales ⬇️
Nostocaceae ⬇️
Aphanizomenonaceae ⬇️
Bifidobacterium adolescentis ⬇️
Rothia mucilaginosa ⬆️
Propionibacteriaceae ⬆️
Adlercreutzia equolifaciens ⬇️
Senegalimassilia ⬆️
Candidatus Phytoplasma ⬇️
16SrX (Apple proliferation group) ⬇️
Candidatus Phytoplasma prunorum ⬇️
Mycoplasmopsis ⬇️
Spirochaetota ⬇️
Spirochaetia ⬇️
Dethiosulfovibrio ⬇️

All suggestions are computed solely on their predicted microbiome impact. Safety, side-effects etc must be evaluated by your medical professionals before starting. Some items suggests have significant risk of adverse consequences for some people.

Special thanks to David F Morrison and Geert Van Houcke for doing Quality Assurance. Special thanks to Oliver Luk, B.Sc. (Biology) from BiomeSight for spot checking the coding of data from the US National Library of Medicine

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