National Library of Medicine Citations for Chronic Fatigue Syndrome

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low. Names are indented according to taxonomy rank. Hover over to see rank.

Haemophilus ⬇️ ⬇️
Haemophilus parainfluenzae ⬇️
Pseudomonadales ⬆️
Pseudomonadaceae ⬆️
Pseudomonas ⬆️
Klebsiella ⬆️
Enterobacter ⬆️
Escherichia coli ⬆️
Acetobacter senegalensis ⬇️
Bacteroidota ⬆️
Bacteroidia ⬆️
Bacteroidales ⬆️
Alistipes ⬆️ ⬆️
Porphyromonadaceae ⬇️
Porphyromonas ⬇️ ⬇️
Prevotella ⬆️
Prevotella histicola ⬇️
Odoribacter splanchnicus ⬇️
Barnesiellaceae ⬆️
Coprobacter secundus ⬇️
Parabacteroides merdae ⬇️
Parabacteroides distasonis ⬇️
Bacteroidaceae ⬆️
Bacteroides ⬆️ ⬆️ ⬇️
Bacteroides ovatus ⬆️
Bacteroides uniformis ⬆️
Phocaeicola vulgatus ⬇️
Bacillota ⬇️
Eubacteriales ⬇️
Lachnospiraceae ⬇️
Fusicatenibacter saccharivorans ⬇️
Lachnoclostridium ⬆️
[Clostridium] symbiosum ⬆️
[Clostridium] scindens ⬆️ ⬆️
[Clostridium] nexile ⬆️
Agathobacter rectalis ⬇️
Dorea ⬇️
Dorea formicigenerans ⬇️
Dorea longicatena ⬇️ ⬇️
Anaerostipes ⬇️
Anaerostipes caccae ⬆️
[Ruminococcus] gnavus ⬆️
Anaerobutyricum hallii ⬇️
Enterocloster bolteae ⬆️ ⬆️
Coprococcus ⬇️
Coprococcus catus ⬇️
Coprococcus comes ⬇️
Blautia ⬆️
Blautia obeum ⬇️
Roseburia inulinivorans ⬇️
Pseudoflavonifractor capillosus ⬆️
Ruminococcus ⬆️
Ruminococcus bromii ⬆️
Ruthenibacterium lactatiformans ⬆️
Faecalibacterium ⬇️ ⬇️ ⬇️
Faecalibacterium prausnitzii ⬇️ ⬇️
Oscillibacter ⬆️
Flavonifractor plautii ⬆️
Clostridiaceae ⬆️
Clostridium ⬆️ ⬆️
Clostridium butyricum ⬇️
Lactonifactor ⬆️
Clostridiales bacterium 1_7_47FAA ⬆️
Clostridiales bacterium L2-14 ⬆️
Coprobacillus ⬆️
Turicibacter ⬆️
Phascolarctobacterium ⬆️
Veillonella ⬇️ ⬇️ πŸ§ͺ 263244035 %ile
Streptococcus ⬆️ ⬆️ ⬇️
Atopostipes ⬆️
Lactobacillus ⬇️ ⬇️
Enterococcus ⬆️ ⬇️
Actinomycetales ⬆️
Bifidobacterium ⬇️ ⬇️ ⬇️ ⬇️
Rothia ⬆️
Rothia dentocariosa ⬆️
Rothia mucilaginosa ⬆️
Eggerthella ⬆️
Eggerthella lenta ⬆️
Bilophila wadsworthia ⬇️
Campylobacter jejuni ⬆️
Fusobacteriota ⬆️
Leptotrichia ⬆️ ⬆️
Fusobacterium ⬆️
Rothia ⬆️

To see matches for your sample with the literature, raise display level.

Based on Clinical Studies in US National Libary of Medicine

For matching a percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary thresholds. In some cases, like for d-acidosis, it is the total from all bacteria that is important.

Reference Data
Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Bacteroidia (NCBI:200643 ) High n/a Distribution    πŸ“š PubMed
family Bacteroidaceae (NCBI:815 ) High n/a Distribution    πŸ“š PubMed
family Barnesiellaceae (NCBI:2005519 ) High n/a Distribution    πŸ“š PubMed
family Clostridiaceae (NCBI:31979 ) High n/a Distribution    πŸ“š PubMed
family Lachnospiraceae (NCBI:186803 ) Low n/a Distribution    πŸ“š PubMed
family Porphyromonadaceae (NCBI:171551 ) Low n/a Distribution    πŸ“š PubMed
family Pseudomonadaceae (NCBI:135621 ) High n/a Distribution    πŸ“š PubMed
genus Alistipes (NCBI:239759 ) High n/a Distribution    πŸ“š PubMed
genus Anaerostipes (NCBI:207244 ) Low n/a Distribution    πŸ“š PubMed
genus Atopostipes (NCBI:292480 ) High n/a Distribution    πŸ“š PubMed
genus Bacteroides (NCBI:816 ) High n/a Distribution    πŸ“š PubMed
genus Bacteroides (NCBI:816 ) Low n/a Distribution    πŸ“š PubMed
genus Bifidobacterium (NCBI:1678 ) Low n/a Distribution    πŸ“š PubMed
genus Blautia (NCBI:572511 ) High n/a Distribution    πŸ“š PubMed
genus Clostridium (NCBI:1485 ) High n/a Distribution    πŸ“š PubMed
genus Coprobacillus (NCBI:100883 ) High n/a Distribution    πŸ“š PubMed
genus Coprococcus (NCBI:33042 ) Low n/a Distribution    πŸ“š PubMed
genus Dorea (NCBI:189330 ) Low n/a Distribution    πŸ“š PubMed
genus Eggerthella (NCBI:84111 ) High n/a Distribution    πŸ“š PubMed
genus Enterobacter (NCBI:547 ) High n/a Distribution    πŸ“š PubMed
genus Enterococcus (NCBI:1350 ) High n/a Distribution    πŸ“š PubMed
genus Enterococcus (NCBI:1350 ) Low n/a Distribution    πŸ“š PubMed
genus Faecalibacterium (NCBI:216851 ) Low n/a Distribution    πŸ“š PubMed
genus Fusobacterium (NCBI:848 ) High n/a Distribution    πŸ“š PubMed
genus Haemophilus (NCBI:724 ) Low n/a Distribution    πŸ“š PubMed
genus Klebsiella (NCBI:570 ) High n/a Distribution    πŸ“š PubMed
genus Lachnoclostridium (NCBI:1506553 ) High n/a Distribution    πŸ“š PubMed
genus Lactobacillus (NCBI:1578 ) High and Low n/a Distribution    πŸ“š PubMed
genus Lactobacillus (NCBI:1578 ) Low n/a Distribution    πŸ“š PubMed
genus Lactonifactor (NCBI:420345 ) High n/a Distribution    πŸ“š PubMed
genus Leptotrichia (NCBI:32067 ) High n/a Distribution    πŸ“š PubMed
genus Oscillibacter (NCBI:459786 ) High n/a Distribution    πŸ“š PubMed
genus Phascolarctobacterium (NCBI:33024 ) High n/a Distribution    πŸ“š PubMed
genus Porphyromonas (NCBI:836 ) Low n/a Distribution    πŸ“š PubMed
genus Prevotella (NCBI:838 ) High n/a Distribution    πŸ“š PubMed
genus Pseudomonas (NCBI:286 ) High n/a Distribution    πŸ“š PubMed
genus Rothia (NCBI:32207 ) High n/a Distribution    πŸ“š PubMed
genus Rothia (NCBI:508215 ) High n/a Distribution    πŸ“š PubMed
genus Ruminococcus (NCBI:1263 ) High n/a Distribution    πŸ“š PubMed
genus Streptococcus (NCBI:1301 ) High n/a Distribution    πŸ“š PubMed
genus Streptococcus (NCBI:1301 ) Low n/a Distribution    πŸ“š PubMed
genus Turicibacter (NCBI:191303 ) High n/a Distribution    πŸ“š PubMed
genus Veillonella (NCBI:29465 ) Low n/a Distribution    πŸ“š PubMed
order Actinomycetales (NCBI:2037 ) High n/a Distribution    πŸ“š PubMed
order Bacteroidales (NCBI:171549 ) High n/a Distribution    πŸ“š PubMed
order Eubacteriales (NCBI:186802 ) Low n/a Distribution    πŸ“š PubMed
order Pseudomonadales (NCBI:72274 ) High n/a Distribution    πŸ“š PubMed
phylum Bacillota (NCBI:1239 ) Low n/a Distribution    πŸ“š PubMed
phylum Bacteroidota (NCBI:976 ) High n/a Distribution    πŸ“š PubMed
phylum Fusobacteriota (NCBI:32066 ) High n/a Distribution    πŸ“š PubMed
species [Clostridium] nexile (NCBI:29361 ) High n/a Distribution    πŸ“š PubMed
species [Clostridium] scindens (NCBI:29347 ) High n/a Distribution    πŸ“š PubMed
species [Clostridium] symbiosum (NCBI:1512 ) High n/a Distribution    πŸ“š PubMed
species [Ruminococcus] gnavus (NCBI:33038 ) High n/a Distribution    πŸ“š PubMed
species Acetobacter senegalensis (NCBI:446692 ) Low n/a Distribution    πŸ“š PubMed
species Agathobacter rectalis (NCBI:39491 ) Low n/a Distribution    πŸ“š PubMed
species Anaerobutyricum hallii (NCBI:39488 ) Low n/a Distribution    πŸ“š PubMed
species Anaerostipes caccae (NCBI:105841 ) High n/a Distribution    πŸ“š PubMed
species Bacteroides ovatus (NCBI:28116 ) High n/a Distribution    πŸ“š PubMed
species Bacteroides uniformis (NCBI:820 ) High n/a Distribution    πŸ“š PubMed
species Bilophila wadsworthia (NCBI:35833 ) Low n/a Distribution    πŸ“š PubMed
species Blautia obeum (NCBI:40520 ) Low n/a Distribution    πŸ“š PubMed
species Campylobacter jejuni (NCBI:197 ) High n/a Distribution    πŸ“š PubMed
species Clostridiales bacterium 1_7_47FAA (NCBI:457421 ) High n/a Distribution    πŸ“š PubMed
species Clostridiales bacterium L2-14 (NCBI:620860 ) High n/a Distribution    πŸ“š PubMed
species Clostridium butyricum (NCBI:1492 ) Low n/a Distribution    πŸ“š PubMed
species Coprobacter secundus (NCBI:1501392 ) Low n/a Distribution    πŸ“š PubMed
species Coprococcus catus (NCBI:116085 ) Low n/a Distribution    πŸ“š PubMed
species Coprococcus comes (NCBI:410072 ) Low n/a Distribution    πŸ“š PubMed
species Dorea formicigenerans (NCBI:39486 ) Low n/a Distribution    πŸ“š PubMed
species Dorea longicatena (NCBI:88431 ) Low n/a Distribution    πŸ“š PubMed
species Eggerthella lenta (NCBI:84112 ) High n/a Distribution    πŸ“š PubMed
species Enterocloster bolteae (NCBI:208479 ) High n/a Distribution    πŸ“š PubMed
species Escherichia coli (NCBI:562 ) High n/a Distribution    πŸ“š PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low n/a Distribution    πŸ“š PubMed
species Flavonifractor plautii (NCBI:292800 ) High n/a Distribution    πŸ“š PubMed
species Fusicatenibacter saccharivorans (NCBI:1150298 ) Low n/a Distribution    πŸ“š PubMed
species Haemophilus parainfluenzae (NCBI:729 ) Low n/a Distribution    πŸ“š PubMed
species Odoribacter splanchnicus (NCBI:28118 ) Low n/a Distribution    πŸ“š PubMed
species Parabacteroides distasonis (NCBI:823 ) Low n/a Distribution    πŸ“š PubMed
species Parabacteroides merdae (NCBI:46503 ) Low n/a Distribution    πŸ“š PubMed
species Phocaeicola vulgatus (NCBI:821 ) Low n/a Distribution    πŸ“š PubMed
species Prevotella histicola (NCBI:470565 ) Low n/a Distribution    πŸ“š PubMed
species Pseudoflavonifractor capillosus (NCBI:106588 ) High n/a Distribution    πŸ“š PubMed
species Roseburia inulinivorans (NCBI:360807 ) Low n/a Distribution    πŸ“š PubMed
species Rothia dentocariosa (NCBI:2047 ) High n/a Distribution    πŸ“š PubMed
species Rothia mucilaginosa (NCBI:43675 ) High n/a Distribution    πŸ“š PubMed
species Ruminococcus bromii (NCBI:40518 ) High n/a Distribution    πŸ“š PubMed
species Ruthenibacterium lactatiformans (NCBI:1550024 ) High n/a Distribution    πŸ“š PubMed

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