National Library of Medicine Citations for Crohn's Disease

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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A percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary values.

Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Bacilli (NCBI:91061 ) High Distribution    📚 PubMed
class Bacilli (NCBI:91061 ) Low Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low Distribution    📚 PubMed
family Aerococcaceae (NCBI:186827 ) High Distribution    📚 PubMed
family Bifidobacteriaceae (NCBI:31953 ) Low Distribution    📚 PubMed
family Christensenellaceae (NCBI:990719 ) Low Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
genus Abiotrophia (NCBI:46123 ) Low Distribution    📚 PubMed
genus Acetobacter (NCBI:434 ) Low Distribution    📚 PubMed
genus Acidaminococcus (NCBI:904 ) Low Distribution    📚 PubMed
genus Actinobacillus (NCBI:713 ) High Distribution    📚 PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    📚 PubMed
genus Adlercreutzia (NCBI:447020 ) High Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) High Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) High Distribution    📚 PubMed
genus Anaerofustis (NCBI:264995 ) Low Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) High Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) Low Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) Low Distribution    📚 PubMed
genus Anaerotruncus (NCBI:244127 ) High Distribution    📚 PubMed
genus Anaerotruncus (NCBI:244127 ) Low Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Barnesiella (NCBI:397864 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bilophila (NCBI:35832 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Burkholderia (NCBI:32008 ) High Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) Low Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) Low Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) High Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) Low Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) Low Distribution    📚 PubMed
genus Campylobacter (NCBI:194 ) High Distribution    📚 PubMed
genus Campylobacter (NCBI:194 ) Low Distribution    📚 PubMed
genus Candida (NCBI:1535326 ) High Distribution    📚 PubMed
genus Catenibacterium (NCBI:135858 ) High Distribution    📚 PubMed
genus Catenibacterium (NCBI:135858 ) Low Distribution    📚 PubMed
genus Catenibacterium (NCBI:135858 ) Low Distribution    📚 PubMed
genus Cetobacterium (NCBI:180162 ) High Distribution    📚 PubMed
genus Citrobacter (NCBI:544 ) High Distribution    📚 PubMed
genus Citrobacter (NCBI:544 ) Low Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) High Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) High Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) Low Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) High Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Dehalobacterium (NCBI:51514 ) Low Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) High Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) Low Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) Low Distribution    📚 PubMed
genus Dialister (NCBI:39948 ) High Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) High Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) Low Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) Low Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) High Distribution    📚 PubMed
genus Enterobacter (NCBI:547 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) High Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) Low Distribution    📚 PubMed
genus Facklamia (NCBI:66831 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) High Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Flavonifractor (NCBI:946234 ) High Distribution    📚 PubMed
genus Flavonifractor (NCBI:946234 ) Low Distribution    📚 PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) High Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) High Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) Low Distribution    📚 PubMed
genus Gemmiger (NCBI:204475 ) Low Distribution    📚 PubMed
genus Gordonibacter (NCBI:644652 ) High Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) High Distribution    📚 PubMed
genus Jonquetella (NCBI:428711 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) Low Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) Low Distribution    📚 PubMed
genus Lachnospira (NCBI:28050 ) Low Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Lactococcus (NCBI:1357 ) Low Distribution    📚 PubMed
genus Leuconostoc (NCBI:1243 ) High Distribution    📚 PubMed
genus Malassezia (NCBI:55193 ) Low Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) High Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) Low Distribution    📚 PubMed
genus Megasphaera (NCBI:906 ) Low Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) High Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) Low Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) Low Distribution    📚 PubMed
genus Methanosphaera (NCBI:2316 ) High Distribution    📚 PubMed
genus Mitsuokella (NCBI:52225 ) High Distribution    📚 PubMed
genus Mitsuokella (NCBI:52225 ) Low Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) High Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    📚 PubMed
genus Olsenella (NCBI:133925 ) Low Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) High Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) Low Distribution    📚 PubMed
genus Paenibacillus (NCBI:44249 ) Low Distribution    📚 PubMed
genus Pantoea (NCBI:53335 ) High Distribution    📚 PubMed
genus Pantoea (NCBI:53335 ) Low Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) High Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) High Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) Low Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) Low Distribution    📚 PubMed
genus Paraprevotella (NCBI:577309 ) High Distribution    📚 PubMed
genus Paraprevotella (NCBI:577309 ) Low Distribution    📚 PubMed
genus Parasutterella (NCBI:577310 ) High Distribution    📚 PubMed
genus Parasutterella (NCBI:577310 ) Low Distribution    📚 PubMed
genus Parvimonas (NCBI:543311 ) High Distribution    📚 PubMed
genus Peptostreptococcus (NCBI:1257 ) High Distribution    📚 PubMed
genus Phascolarctobacterium (NCBI:33024 ) Low Distribution    📚 PubMed
genus Porphyromonas (NCBI:836 ) Low Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Proteus (NCBI:210425 ) High Distribution    📚 PubMed
genus Proteus (NCBI:583 ) High Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) High Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Slackia (NCBI:84108 ) Low Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) Low Distribution    📚 PubMed
genus Succinatimonas (NCBI:674963 ) High Distribution    📚 PubMed
genus Sutterella (NCBI:40544 ) High Distribution    📚 PubMed
genus Sutterella (NCBI:40544 ) Low Distribution    📚 PubMed
genus Sutterella (NCBI:40544 ) Low Distribution    📚 PubMed
genus Thermoanaerobacter (NCBI:1754 ) High Distribution    📚 PubMed
genus Treponema (NCBI:157 ) Low Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High Distribution    📚 PubMed
genus Vibrio (NCBI:662 ) High Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) Low Distribution    📚 PubMed
order Lactobacillales (NCBI:186826 ) High Distribution    📚 PubMed
order Verrucomicrobiales (NCBI:48461 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Bacteroidetes (NCBI:976 ) Low Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
species [Clostridium] leptum (NCBI:1535 ) Low Distribution    📚 PubMed
species [Eubacterium] rectale (NCBI:39491 ) Low Distribution    📚 PubMed
species Bacteroides fragilis (NCBI:817 ) High Distribution    📚 PubMed
species Bacteroides fragilis (NCBI:817 ) Low Distribution    📚 PubMed
species Bacteroides uniformis (NCBI:820 ) High Distribution    📚 PubMed
species Blautia coccoides (NCBI:1532 ) Low Distribution    📚 PubMed
species Blautia faecis (NCBI:871665 ) High Distribution    📚 PubMed
species Escherichia coli (NCBI:562 ) High Distribution    📚 PubMed
species Escherichia coli (NCBI:562 ) High Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) High Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) High Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) High Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Francisella tularensis (NCBI:263 ) Low Distribution    📚 PubMed
species Fusobacterium nucleatum (NCBI:851 ) High Distribution    📚 PubMed
species Prevotella oralis (NCBI:28134 ) High Distribution    📚 PubMed
species Roseburia inulinivorans (NCBI:360807 ) High Distribution    📚 PubMed
species Roseburia sp. (NCBI:2049040 ) Low Distribution    📚 PubMed
species Ruminococcus gnavus (NCBI:33038 ) High Distribution    📚 PubMed

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