National Library of Medicine Citations for Irritable Bowel Syndrome

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low.

Pseudomonadota ⬆️ ⬆️
Legionellales ⬇️
Legionellaceae ⬇️
Legionella ⬇️
Rhodanobacteraceae ⬇️
Luteibacter ⬇️
Luteibacter anthropi ⬇️
Xanthomonadaceae ⬇️
Stenotrophomonas terrae ⬆️
Shewanellaceae ⬇️
Shewanella ⬇️
Succinivibrio dextrinosolvens ⬇️
Aeromonas ⬆️
Pasteurellaceae incertae sedis ⬇️
[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex ⬇️
[Actinobacillus] rossii ⬇️
Mannheimia caviae ⬇️
Hydrocarboniphaga daqingensis ⬇️
Thiotrichaceae ⬇️
Pseudomonadales ⬇️
Pseudomonas aeruginosa ⬆️
Yersiniaceae ⬇️
Serratia ⬇️
Serratia entomophila ⬇️
Proteus ⬆️
Enterobacteriaceae ⬆️ ⬆️
Klebsiella ⬆️ ⬇️ ⬇️
Enterobacter ⬆️ ⬇️
Escherichia ⬆️ ⬇️
Escherichia albertii ⬇️
Escherichia coli ⬆️ ⬆️ ⬆️
Shigella ⬆️
Skermanella ⬇️
Rhodospirillum ⬇️
Novispirillum ⬇️
Caulobacterales ⬇️
Caulobacteraceae ⬇️
Hyphomicrobium ⬇️
canis group ⬇️
Methylophilaceae ⬇️
Burkholderia ⬇️
Alcaligenaceae ⬇️
Oxalobacter ⬇️
Sutterellaceae ⬆️
Sutterella ⬇️
Sutterella sanguinus ⬇️
Parasutterella ⬇️
Desulfovibrionaceae ⬆️
Desulfovibrio ⬆️
Desulfovibrio fairfieldensis ⬇️
Desulfobacterium ⬆️
Desulfobacterium indolicum ⬆️
Desulfuromonadaceae ⬇️
Desulfuromusa ⬇️
Helicobacteraceae ⬇️
Lentisphaerota ⬆️
Lentisphaeria ⬆️
Victivallales ⬆️
Victivallaceae ⬆️
Victivallis ⬆️
Victivallis vadensis ⬆️
Verrucomicrobiota ⬆️ ⬇️
Akkermansia muciniphila ⬆️ ⬇️
Opitutae ⬇️
unclassified Bacteroidetes Order II. ⬇️
Rhodothermaceae ⬇️
Rhodothermus ⬇️
Flavobacterium ⬆️
Gillisia ⬇️
Sphingobacteriia ⬇️
Sphingobacteriales ⬇️
Sphingobacteriaceae ⬇️
Sphingobacterium ⬇️
Sphingobacterium bambusae ⬇️
Olivibacter ⬇️
Pedobacter ⬇️
Rikenellaceae ⬆️ ⬆️
Alistipes ⬆️ ⬇️
Alistipes finegoldii ⬆️
unclassified Alistipes ⬆️
Alistipes sp. NML05A004 ⬆️
Alistipes putredinis ⬆️
Alistipes shahii ⬆️
Porphyromonas canis ⬇️
Prevotella ⬆️ ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️
Segatella copri ⬇️
Segatella paludivivens ⬇️
Odoribacter splanchnicus ⬆️
Butyricimonas ⬇️
Butyricimonas faecihominis ⬆️
unclassified Butyricimonas ⬆️
Butyricimonas sp. 214-4 ⬆️
Dysgonomonas wimpennyi ⬇️
Parabacteroides ⬇️
Bacteroidaceae ⬆️
Bacteroides ⬆️ ⬆️ ⬇️ ⬇️
Bacteroides sp. J1511 ⬆️
Bacteroides sp. 35AE37 ⬆️
Bacteroides sp. EBA5-17 ⬆️
Bacteroides sp. AR20 ⬆️
Bacteroides denticanum ⬇️
Bacteroides ovatus ⬇️
Bacteroides xylanisolvens ⬇️
Bacteroides caccae ⬆️
Bacteroides graminisolvens ⬇️
Bacteroides thetaiotaomicron ⬆️
Bacteroides uniformis ⬇️
Bacteroides stercorirosoris ⬇️
Phocaeicola sartorii ⬇️
Phocaeicola paurosaccharolyticus ⬇️
Phocaeicola vulgatus ⬇️
Amoebophilaceae ⬇️
Candidatus Amoebophilus ⬇️
Candidatus Amoebophilus asiaticus ⬇️
Runella ⬇️
Runella limosa ⬇️
Bacillota ⬇️ ⬇️
Peptoniphilus ⬇️
Peptoniphilus coxii ⬇️
Clostridia ⬆️
Eubacteriales ⬆️
Lachnospiraceae ⬆️ ⬇️ ⬇️ ⬇️
Parasporobacterium ⬆️
Lachnobacterium ⬇️
Eisenbergiella ⬆️
Anaerostipes ⬆️
Mediterraneibacter ⬇️
[Ruminococcus] gnavus ⬇️
Hespellia ⬆️
Oribacterium ⬇️
Oribacterium sinus ⬇️
Lachnospira ⬇️
Coprococcus catus ⬇️
Pseudobutyrivibrio xylanivorans ⬇️
Blautia coccoides ⬇️
Blautia schinkii ⬇️
unclassified Blautia ⬆️
Blautia sp. YHC-4 ⬆️
Anaerosporobacter mobilis ⬆️
Roseburia ⬆️ ⬇️ ⬇️
Roseburia intestinalis ⬆️
unclassified Roseburia ⬆️
Roseburia inulinivorans ⬆️
Peptoclostridium ⬆️
Clostridioides difficile ⬆️
[Clostridium] paradoxum ⬇️
[Clostridium] thermoalcaliphilum ⬇️
Eubacterium ⬆️ ⬇️
Acetobacterium ⬇️
Desulfotomaculum defluvii ⬇️
Peptococcus ⬇️
Peptococcus niger ⬇️
unclassified Clostridiales ⬆️
Oscillospiraceae ⬆️
Papillibacter ⬆️
Pseudoflavonifractor ⬆️
Ruminococcus ⬆️ ⬆️ ⬇️
Ruminiclostridium cellulolyticum ⬇️
Ruminiclostridium cellobioparum ⬇️
Ruminiclostridium cellobioparum subsp. termitidis ⬇️
Faecalibacterium ⬇️
Faecalibacterium prausnitzii ⬇️ ⬇️
Pseudoclostridium ⬇️
Pseudoclostridium thermosuccinogenes ⬇️
Subdoligranulum ⬇️
Sporobacter ⬇️
Oscillibacter ⬆️ ⬆️
Anaerofilum ⬇️
Hungateiclostridiaceae ⬆️
Alkaliphilus ⬇️
Clostridium ⬆️
Clostridium malenominatum ⬇️
Clostridium akagii ⬇️
Hathewaya ⬇️
Lactonifactor ⬆️
Caloramator indicus ⬇️
Butyricicoccus ⬆️
Tindallia ⬇️
Tindallia magadiensis ⬇️
Natronincola ⬇️
Natronincola peptidivorans ⬇️
Heliorestis ⬇️
Intestinimonas ⬆️
Anaerovorax ⬆️
Ruminococcaceae ⬆️ ⬆️
Christensenellaceae ⬆️ ⬆️ ⬇️
Thermosediminibacterales ⬇️
Tepidanaerobacteraceae ⬇️
Tepidanaerobacter ⬇️
Tepidanaerobacter syntrophicus ⬇️
Thermoanaerobacteraceae ⬇️
Moorella group ⬇️
Moorella ⬇️
Thermoanaerobacterales Family III. Incertae Sedis ⬇️
Bacillota sensu stricto incertae sedis ⬆️
Erysipelotrichaceae ⬆️
Dielma fastidiosa ⬆️
Faecalitalea ⬆️
Amedibacillus ⬇️
Amedibacillus dolichus ⬇️
Holdemania filiformis ⬆️
Turicibacter ⬇️ ⬇️
Phascolarctobacterium succinatutens ⬇️
Acidaminococcus ⬇️
Acidaminococcus fermentans ⬇️
Veillonella ⬆️ ⬇️
unclassified Veillonella ⬆️
Veillonella atypica ⬇️
Veillonella dispar ⬇️
Dialister invisus ⬆️ ⬇️
Negativicoccus ⬇️
Negativicoccus succinicivorans ⬇️
Anaerovibrio lipolyticus ⬇️
Pectinatus ⬇️
Pectinatus cerevisiiphilus ⬇️
Bacillus ⬇️
Heyndrickxia coagulans ⬇️
Planifilum ⬇️
Planifilum fimeticola ⬇️
Bacillales incertae sedis ⬇️
Thermicanus ⬇️
Gemellaceae ⬇️
Gemella ⬇️
Staphylococcaceae ⬇️
Salinicoccus luteus ⬇️
unclassified Streptococcus ⬆️
Streptococcus sp. 11aTha1 ⬆️
Lactococcus ⬇️
Pediococcus ⬇️
Lactobacillus ⬆️ ⬇️ ⬇️
Weissella ⬇️
Enterococcus ⬆️ ⬆️ ⬇️ ⬇️
Nostocales ⬇️
Nostocaceae ⬇️
Rivulariaceae ⬇️
Calotrichaceae ⬇️
Calothrix ⬇️
Actinomycetota ⬆️ ⬇️
Bifidobacterium ⬆️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Bifidobacterium adolescentis ⬇️
Bifidobacterium catenulatum ⬇️
Bifidobacterium catenulatum subsp. kashiwanohense ⬇️
Bifidobacterium catenulatum PV20-2 ⬇️
Bifidobacterium gallicum ⬇️
Streptosporangiales ⬇️
Streptosporangiaceae ⬇️
Thermomonosporaceae ⬇️
Gordonibacter pamelaeae ⬆️
Slackia faecicanis ⬇️
Eggerthella sinensis ⬇️
Senegalimassilia ⬆️
Nitriliruptoria ⬇️
Euzebyales ⬇️
Euzebyaceae ⬇️
Euzebya ⬇️
Euzebya tangerina ⬇️
Metamycoplasma hominis ⬆️
Entomoplasmataceae ⬇️
Mesoplasma ⬇️
Mesoplasma entomophilum ⬇️
Mycoplasmopsis ⬇️
Mycoplasmopsis edwardii ⬇️
Bacteria incertae sedis ⬆️
Desulfobacterota ⬆️
Candidatus Tammella ⬇️
Candidatus Tammella caduceiae ⬇️
Acidobacteriota ⬆️
Methanobrevibacter smithii ⬆️ ⬆️ ⬇️
Eukaryota ⬇️
Proteus ⬆️

All suggestions are computed solely on their predicted microbiome impact. Safety, side-effects etc must be evaluated by your medical professionals before starting. Some items suggests have significant risk of adverse consequences for some people.

Special thanks to David F Morrison and Geert Van Houcke for doing Quality Assurance. Special thanks to Oliver Luk, B.Sc. (Biology) from BiomeSight for spot checking the coding of data from the US National Library of Medicine

This is an Academic site. It generates theoretical models of what may benefit a specific microbiome results.

Copyright 2016-2023 Lassesen Consulting, LLC [2007], DBA, Microbiome Prescription. All rights served.
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