National Library of Medicine Citations for Obesity

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

AI Engines For more Details: Perplexity  Kagi Labs  You 

Note these are associations and not causation. Items being high or low may be part of the immune response.

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A percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary values.

Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Actinomycetia (NCBI:1760 ) High Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) Low Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low Distribution    📚 PubMed
class Deferribacteres (NCBI:68337 ) High Distribution    📚 PubMed
class Deltaproteobacteria (NCBI:28221 ) Low Distribution    📚 PubMed
class Fusobacteriia (NCBI:203490 ) High Distribution    📚 PubMed
class Mollicutes (NCBI:31969 ) High Distribution    📚 PubMed
class Mollicutes (NCBI:31969 ) Low Distribution    📚 PubMed
family Acidaminococcaceae (NCBI:909930 ) Low Distribution    📚 PubMed
family Akkermansiaceae (NCBI:1647988 ) High Distribution    📚 PubMed
family Burkholderiaceae (NCBI:119060 ) High Distribution    📚 PubMed
family Christensenellaceae (NCBI:990719 ) High Distribution    📚 PubMed
family Christensenellaceae (NCBI:990719 ) Low Distribution    📚 PubMed
family Coriobacteriaceae (NCBI:84107 ) High Distribution    📚 PubMed
family Desulfovibrionaceae (NCBI:194924 ) High Distribution    📚 PubMed
family Desulfovibrionaceae (NCBI:194924 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Erysipelotrichaceae (NCBI:128827 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Muribaculaceae (NCBI:2005473 ) Low Distribution    📚 PubMed
family Odoribacteraceae (NCBI:1853231 ) Low Distribution    📚 PubMed
family Oscillospiraceae (NCBI:216572 ) Low Distribution    📚 PubMed
family Paludibacteraceae (NCBI:2005523 ) Low Distribution    📚 PubMed
family Peptococcaceae (NCBI:186807 ) Low Distribution    📚 PubMed
family Porphyromonadaceae (NCBI:171551 ) Low Distribution    📚 PubMed
family Rikenellaceae (NCBI:171550 ) High Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) High Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
genus Adlercreutzia (NCBI:447020 ) High Distribution    📚 PubMed
genus Adlercreutzia (NCBI:447020 ) High Distribution    📚 PubMed
genus Aggregatibacter (NCBI:416916 ) High Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) High Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) High Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) Low Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) Low Distribution    📚 PubMed
genus Alkaliphilus (NCBI:114627 ) Low Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) Low Distribution    📚 PubMed
genus Anaerotruncus (NCBI:244127 ) High Distribution    📚 PubMed
genus Anaerotruncus (NCBI:244127 ) Low Distribution    📚 PubMed
genus Bacillus (NCBI:55087 ) Low Distribution    📚 PubMed
genus Bacillus (NCBI:1386 ) Low Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bilophila (NCBI:35832 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Burkholderia (NCBI:32008 ) High Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) High Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) Low Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) High Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) Low Distribution    📚 PubMed
genus Catenibacterium (NCBI:135858 ) High Distribution    📚 PubMed
genus Centipeda (NCBI:82202 ) Low Distribution    📚 PubMed
genus Centipeda (NCBI:82283 ) Low Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) High Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) High Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) High Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) High Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) Low Distribution    📚 PubMed
genus Dialister (NCBI:39948 ) Low Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) High Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) Low Distribution    📚 PubMed
genus Enterobacter (NCBI:547 ) High Distribution    📚 PubMed
genus Erysipelatoclostridium (NCBI:1505663 ) Low Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) High Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) Low Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalibaculum (NCBI:1729679 ) High Distribution    📚 PubMed
genus Flavobacterium (NCBI:237 ) Low Distribution    📚 PubMed
genus Flavonifractor (NCBI:946234 ) High Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) Low Distribution    📚 PubMed
genus Gemmiger (NCBI:204475 ) Low Distribution    📚 PubMed
genus Gordonibacter (NCBI:644652 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) High Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) High Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) Low Distribution    📚 PubMed
genus Methanosphaera (NCBI:2316 ) High Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    📚 PubMed
genus Oribacterium (NCBI:265975 ) Low Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) High Distribution    📚 PubMed
genus Oscillospira (NCBI:119852 ) Low Distribution    📚 PubMed
genus Oscillospira (NCBI:119852 ) Low Distribution    📚 PubMed
genus Paenibacillus (NCBI:44249 ) Low Distribution    📚 PubMed
genus Pantoea (NCBI:53335 ) High Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) High Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) Low Distribution    📚 PubMed
genus Paraprevotella (NCBI:577309 ) High Distribution    📚 PubMed
genus Parasutterella (NCBI:577310 ) High Distribution    📚 PubMed
genus Parvimonas (NCBI:543311 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Propionibacterium (NCBI:1743 ) High Distribution    📚 PubMed
genus Romboutsia (NCBI:1501226 ) High Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) High Distribution    📚 PubMed
genus Ruminiclostridium (NCBI:1508657 ) Low Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Slackia (NCBI:84108 ) High Distribution    📚 PubMed
genus Staphylococcus (NCBI:1279 ) High Distribution    📚 PubMed
genus Staphylococcus (NCBI:1279 ) Low Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) Low Distribution    📚 PubMed
genus Succinatimonas (NCBI:674963 ) High Distribution    📚 PubMed
genus Succinatimonas (NCBI:674963 ) Low Distribution    📚 PubMed
genus Sutterella (NCBI:40544 ) High Distribution    📚 PubMed
order Desulfovibrionales (NCBI:213115 ) Low Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) Low Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Fibrobacteres (NCBI:65842 ) High Distribution    📚 PubMed
phylum Fibrobacteres (NCBI:65842 ) Low Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) High Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) High Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Synergistetes (NCBI:508458 ) High Distribution    📚 PubMed
phylum Synergistetes (NCBI:508458 ) High Distribution    📚 PubMed
phylum Tenericutes (NCBI:544448 ) Low Distribution    📚 PubMed
phylum Verrucomicrobia (NCBI:74201 ) Low Distribution    📚 PubMed
species [Ruminococcus] torques (NCBI:33039 ) High Distribution    📚 PubMed
species Actinobaculum massiliense (NCBI:202789 ) Low Distribution    📚 PubMed
species Actinomyces graevenitzii (NCBI:55565 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Akkermansia sp. (NCBI:1872421 ) Low Distribution    📚 PubMed
species Alistipes inops (NCBI:1501391 ) High Distribution    📚 PubMed
species Alistipes obesi (NCBI:1118061 ) Low Distribution    📚 PubMed
species Bacillus sp. (NCBI:1409 ) Low Distribution    📚 PubMed
species Bacteroides caccae (NCBI:47678 ) High Distribution    📚 PubMed
species Bacteroides sp. (NCBI:29523 ) Low Distribution    📚 PubMed
species Bifidobacterium animalis (NCBI:28025 ) Low Distribution    📚 PubMed
species Blautia wexlerae (NCBI:418240 ) High Distribution    📚 PubMed
species CBS 316 (NCBI:5537 ) Low Distribution    📚 PubMed
species Clostridium sp. (NCBI:1506 ) High Distribution    📚 PubMed
species Clostridium sp. CAG:58 (NCBI:1262824 ) High Distribution    📚 PubMed
species Collinsella aerofaciens (NCBI:74426 ) High Distribution    📚 PubMed
species Dorea formicigenerans (NCBI:39486 ) High Distribution    📚 PubMed
species Eubacterium sp. (NCBI:142586 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) High Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium sp. (NCBI:1971605 ) Low Distribution    📚 PubMed
species Firmicutes bacterium CAG:94 (NCBI:1262989 ) High Distribution    📚 PubMed
species Flavonifractor plautii (NCBI:292800 ) High Distribution    📚 PubMed
species Fusobacterium sp. (NCBI:68766 ) Low Distribution    📚 PubMed
species Haemophilus parainfluenzae (NCBI:729 ) Low Distribution    📚 PubMed
species Klebsiella pneumoniae (NCBI:573 ) High Distribution    📚 PubMed
species Klebsiella pneumoniae (NCBI:573 ) Low Distribution    📚 PubMed
species Lacticaseibacillus paracasei (NCBI:1597 ) Low Distribution    📚 PubMed
species Lactiplantibacillus plantarum (NCBI:1590 ) Low Distribution    📚 PubMed
species Latilactobacillus sakei (NCBI:1599 ) Low Distribution    📚 PubMed
species Lawsonibacter asaccharolyticus (NCBI:2108523 ) High Distribution    📚 PubMed
species Limosilactobacillus reuteri (NCBI:1598 ) High Distribution    📚 PubMed
species Methanobrevibacter smithii (NCBI:2173 ) Low Distribution    📚 PubMed
species Methanobrevibacter smithii (NCBI:2173 ) Low Distribution    📚 PubMed
species Odoribacter splanchnicus (NCBI:28118 ) High Distribution    📚 PubMed
species Oscillibacter sp. (NCBI:1945593 ) Low Distribution    📚 PubMed
species Peptostreptococcus sp. (NCBI:1262 ) Low Distribution    📚 PubMed
species Phocaeicola dorei (NCBI:357276 ) High Distribution    📚 PubMed
species Prevotella bivia (NCBI:28125 ) Low Distribution    📚 PubMed
species Prevotella corporis (NCBI:28128 ) High Distribution    📚 PubMed
species Roseburia hominis (NCBI:301301 ) High Distribution    📚 PubMed
species Rothia dentocariosa (NCBI:2047 ) Low Distribution    📚 PubMed
species Ruminococcus gnavus (NCBI:33038 ) High Distribution    📚 PubMed
species Ruminococcus gnavus (NCBI:33038 ) High Distribution    📚 PubMed
species Ruminococcus sp. (NCBI:41978 ) Low Distribution    📚 PubMed
species Streptococcus salivarius (NCBI:1304 ) Low Distribution    📚 PubMed
species Sutterella sp. (NCBI:1981025 ) High Distribution    📚 PubMed
species Turicibacter sanguinis (NCBI:154288 ) Low Distribution    📚 PubMed
species Veillonella rogosae (NCBI:423477 ) High Distribution    📚 PubMed
subspecies Bifidobacterium animalis subsp. lactis (NCBI:302911 ) Low Distribution    📚 PubMed

All suggestions are computed solely on their predicted microbiome impact. Safety, side-effects etc must be evaluated by your medical professionals before starting. Some items suggests have significant risk of adverse consequences for some people.

Special thanks to David F Morrison and Geert Van Houcke for doing Quality Assurance. Special thanks to Oliver Luk, B.Sc. (Biology) from BiomeSight for spot checking the coding of data from the US National Library of Medicine

This is an Academic site. It generates theoretical models of what may benefit a specific microbiome results.

Copyright 2016-2023 Lassesen Consulting, LLC [2007], DBA, Microbiome Prescription. All rights served.
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Use of data on this site is prohibited except under written license. There is no charge for individual personal use. Use for any commercial applications or research requires a written license.
Caveat emptor: Analysis and suggestions are based on modelling (and thus infererence) based on studies. The data sources are usually given for those that wish to consider alternative inferences. theories and models.

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