National Library of Medicine Citations for Alzheimer's disease

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low. Names are indented according to taxonomy rank. Hover over to see rank.

Pseudomonadota ⬆️
Haemophilus ⬆️ ⬇️
Enterobacteriaceae ⬆️
Escherichia ⬆️ ⬆️
Shigella ⬆️ ⬆️
Castellaniella ⬇️
Parasutterella ⬆️ ⬇️
Verrucomicrobiota ⬆️ ⬆️ ⬆️ ⬇️
Akkermansia ⬆️ ⬆️ ⬆️ ⬆️
Verrucomicrobiaceae ⬆️ ⬆️
Bacteroidota ⬆️ ⬇️
Flavobacterium ⬆️
Bacteroidia ⬆️ ⬇️
Alistipes ⬆️
Porphyromonadaceae ⬇️
Alloprevotella ⬆️ ⬇️
Prevotella ⬆️ ⬆️ ⬆️ ⬆️ ⬆️
Parabacteroides ⬆️
Bacteroides ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️ ⬇️
Bacteroides fragilis ⬆️ ⬇️
Phocaeicola plebeius ⬆️
Ohtaekwangia ⬆️
Bacillota ⬇️ ⬇️ ⬇️ ⬇️
Clostridia ⬇️
Lachnospiraceae ⬇️ ⬇️ ⬇️ ⬇️ ⬇️ ⬇️
Fusicatenibacter ⬇️
Tyzzerella ⬇️
Agathobacter ⬇️
Agathobacter rectalis ⬇️
Dorea ⬆️
Dorea longicatena ⬆️
[Ruminococcus] torques ⬇️
Marvinbryantia ⬇️
Lachnospira ⬇️ ⬇️
Coprococcus ⬇️ ⬇️ ⬇️
Blautia ⬆️ ⬇️ ⬇️
Roseburia ⬇️ ⬇️ ⬇️
Roseburia hominis ⬇️
Peptostreptococcaceae ⬇️
Romboutsia ⬆️ ⬇️ ⬇️
Eubacterium ⬇️ ⬇️
Eubacterium coprostanoligenes ⬆️
Oscillospiraceae ⬆️ ⬇️ ⬇️ ⬇️
Oscillospira ⬆️ ⬆️
Ruminococcus ⬆️ ⬆️ ⬇️
Ruminiclostridium ⬇️ ⬇️
Monoglobus ⬇️ ⬇️
Faecalibacterium ⬆️ ⬆️ ⬆️ ⬇️ ⬇️ ⬇️
Subdoligranulum ⬆️
[Clostridium] leptum ⬆️
[Eubacterium] siraeum ⬇️
Clostridiaceae ⬇️ ⬇️ ⬇️
Clostridium ⬇️ ⬇️ ⬇️
Butyricicoccus ⬇️ ⬇️
Intestinimonas butyriciproducens ⬇️
Gemmiger ⬇️ ⬇️
Mogibacterium ⬇️
Christensenellaceae ⬆️ ⬇️
Erysipelotrichales ⬆️
Erysipelotrichaceae ⬆️ ⬆️ ⬇️ ⬇️
Holdemanella ⬆️ ⬆️
Thomasclavelia spiroformis ⬇️
Turicibacter ⬇️ ⬇️
Phascolarctobacterium ⬆️
Veillonella ⬇️ πŸ§ͺ 263244035 %ile
Dialister ⬇️ ⬇️ ⬇️
Megamonas ⬆️ ⬆️
Bacillus cereus ⬆️
Gemella ⬆️
Lactobacillaceae ⬇️
Lactiplantibacillus ⬇️
Levilactobacillus ⬇️
Enterococcaceae ⬆️ ⬆️
Cyanobacteriota ⬆️
Actinomycetota ⬆️ ⬆️ ⬆️ ⬆️ ⬇️ ⬇️
Actinomycetes ⬆️
Bifidobacteriaceae ⬆️ ⬆️ ⬇️
Bifidobacterium ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️
Brevibacterium ⬇️
Corynebacteriaceae ⬆️ ⬆️
Corynebacterium ⬇️
Adlercreutzia ⬇️
Coriobacteriaceae ⬆️ ⬆️
Desulfovibrionales ⬆️
Bilophila ⬆️
Bilophila wadsworthia ⬇️
Desulfovibrio ⬆️
Patescibacteria group ⬆️
Fusobacterium ⬆️
Fusobacterium nucleatum ⬆️
Deltaproteobacteria ⬆️

To see matches for your sample with the literature, raise display level.

Based on Clinical Studies in US National Libary of Medicine

For matching a percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary thresholds. In some cases, like for d-acidosis, it is the total from all bacteria that is important.

Reference Data
Tax Rank Tax Name Shift Percentile Distribution Citation Link
clade Patescibacteria group (NCBI:1783273 ) High n/a Distribution    πŸ“š PubMed
class Actinomycetes (NCBI:1760 ) High n/a Distribution    πŸ“š PubMed
class Bacteroidia (NCBI:200643 ) High n/a Distribution    πŸ“š PubMed
class Bacteroidia (NCBI:200643 ) Low n/a Distribution    πŸ“š PubMed
class Clostridia (NCBI:186801 ) Low n/a Distribution    πŸ“š PubMed
class Deltaproteobacteria (NCBI:28221 ) High n/a Distribution    πŸ“š PubMed
family Bifidobacteriaceae (NCBI:31953 ) High n/a Distribution    πŸ“š PubMed
family Bifidobacteriaceae (NCBI:31953 ) Low n/a Distribution    πŸ“š PubMed
family Christensenellaceae (NCBI:990719 ) High n/a Distribution    πŸ“š PubMed
family Christensenellaceae (NCBI:990719 ) Low n/a Distribution    πŸ“š PubMed
family Clostridiaceae (NCBI:31979 ) Low n/a Distribution    πŸ“š PubMed
family Coriobacteriaceae (NCBI:84107 ) High n/a Distribution    πŸ“š PubMed
family Corynebacteriaceae (NCBI:1653 ) High n/a Distribution    πŸ“š PubMed
family Enterobacteriaceae (NCBI:543 ) High n/a Distribution    πŸ“š PubMed
family Enterococcaceae (NCBI:81852 ) High n/a Distribution    πŸ“š PubMed
family Erysipelotrichaceae (NCBI:128827 ) High n/a Distribution    πŸ“š PubMed
family Erysipelotrichaceae (NCBI:128827 ) Low n/a Distribution    πŸ“š PubMed
family Lachnospiraceae (NCBI:186803 ) Low n/a Distribution    πŸ“š PubMed
family Lactobacillaceae (NCBI:33958 ) Low n/a Distribution    πŸ“š PubMed
family Oscillospiraceae (NCBI:216572 ) High n/a Distribution    πŸ“š PubMed
family Oscillospiraceae (NCBI:216572 ) Low n/a Distribution    πŸ“š PubMed
family Peptostreptococcaceae (NCBI:186804 ) Low n/a Distribution    πŸ“š PubMed
family Porphyromonadaceae (NCBI:171551 ) Low n/a Distribution    πŸ“š PubMed
family Ruminococcaceae (NCBI:541000 ) Low n/a Distribution    πŸ“š PubMed
family Verrucomicrobiaceae (NCBI:203557 ) High n/a Distribution    πŸ“š PubMed
genus Adlercreutzia (NCBI:447020 ) Low n/a Distribution    πŸ“š PubMed
genus Agathobacter (NCBI:1766253 ) Low n/a Distribution    πŸ“š PubMed
genus Akkermansia (NCBI:239934 ) High n/a Distribution    πŸ“š PubMed
genus Alistipes (NCBI:239759 ) High n/a Distribution    πŸ“š PubMed
genus Alloprevotella (NCBI:1283313 ) High n/a Distribution    πŸ“š PubMed
genus Alloprevotella (NCBI:1283313 ) Low n/a Distribution    πŸ“š PubMed
genus Bacteroides (NCBI:816 ) High n/a Distribution    πŸ“š PubMed
genus Bacteroides (NCBI:816 ) Low n/a Distribution    πŸ“š PubMed
genus Bifidobacterium (NCBI:1678 ) High n/a Distribution    πŸ“š PubMed
genus Bifidobacterium (NCBI:1678 ) Low n/a Distribution    πŸ“š PubMed
genus Bilophila (NCBI:35832 ) High n/a Distribution    πŸ“š PubMed
genus Blautia (NCBI:572511 ) High n/a Distribution    πŸ“š PubMed
genus Blautia (NCBI:572511 ) Low n/a Distribution    πŸ“š PubMed
genus Brevibacterium (NCBI:1696 ) Low n/a Distribution    πŸ“š PubMed
genus Butyricicoccus (NCBI:580596 ) Low n/a Distribution    πŸ“š PubMed
genus Castellaniella (NCBI:359336 ) Low n/a Distribution    πŸ“š PubMed
genus Clostridium (NCBI:1485 ) Low n/a Distribution    πŸ“š PubMed
genus Coprococcus (NCBI:33042 ) Low n/a Distribution    πŸ“š PubMed
genus Corynebacterium (NCBI:1716 ) Low n/a Distribution    πŸ“š PubMed
genus Desulfovibrio (NCBI:872 ) High n/a Distribution    πŸ“š PubMed
genus Dialister (NCBI:39948 ) Low n/a Distribution    πŸ“š PubMed
genus Dorea (NCBI:189330 ) High n/a Distribution    πŸ“š PubMed
genus Escherichia (NCBI:561 ) High n/a Distribution    πŸ“š PubMed
genus Eubacterium (NCBI:1730 ) Low n/a Distribution    πŸ“š PubMed
genus Faecalibacterium (NCBI:216851 ) High n/a Distribution    πŸ“š PubMed
genus Faecalibacterium (NCBI:216851 ) Low n/a Distribution    πŸ“š PubMed
genus Flavobacterium (NCBI:237 ) High n/a Distribution    πŸ“š PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low n/a Distribution    πŸ“š PubMed
genus Fusobacterium (NCBI:848 ) High n/a Distribution    πŸ“š PubMed
genus Gemella (NCBI:1378 ) High n/a Distribution    πŸ“š PubMed
genus Gemmiger (NCBI:204475 ) Low n/a Distribution    πŸ“š PubMed
genus Haemophilus (NCBI:724 ) High n/a Distribution    πŸ“š PubMed
genus Haemophilus (NCBI:724 ) Low n/a Distribution    πŸ“š PubMed
genus Holdemanella (NCBI:1573535 ) High n/a Distribution    πŸ“š PubMed
genus Lachnospira (NCBI:28050 ) Low n/a Distribution    πŸ“š PubMed
genus Lactiplantibacillus (NCBI:2767842 ) Low n/a Distribution    πŸ“š PubMed
genus Levilactobacillus (NCBI:2767886 ) Low n/a Distribution    πŸ“š PubMed
genus Marvinbryantia (NCBI:248744 ) Low n/a Distribution    πŸ“š PubMed
genus Megamonas (NCBI:158846 ) High n/a Distribution    πŸ“š PubMed
genus Mogibacterium (NCBI:86331 ) Low n/a Distribution    πŸ“š PubMed
genus Monoglobus (NCBI:2039302 ) Low n/a Distribution    πŸ“š PubMed
genus Ohtaekwangia (NCBI:1210119 ) High n/a Distribution    πŸ“š PubMed
genus Oscillospira (NCBI:119852 ) High n/a Distribution    πŸ“š PubMed
genus Parabacteroides (NCBI:375288 ) High n/a Distribution    πŸ“š PubMed
genus Parasutterella (NCBI:577310 ) High n/a Distribution    πŸ“š PubMed
genus Parasutterella (NCBI:577310 ) Low n/a Distribution    πŸ“š PubMed
genus Phascolarctobacterium (NCBI:33024 ) High n/a Distribution    πŸ“š PubMed
genus Prevotella (NCBI:838 ) High n/a Distribution    πŸ“š PubMed
genus Romboutsia (NCBI:1501226 ) High n/a Distribution    πŸ“š PubMed
genus Romboutsia (NCBI:1501226 ) Low n/a Distribution    πŸ“š PubMed
genus Roseburia (NCBI:841 ) Low n/a Distribution    πŸ“š PubMed
genus Ruminiclostridium (NCBI:1508657 ) Low n/a Distribution    πŸ“š PubMed
genus Ruminococcus (NCBI:1263 ) High n/a Distribution    πŸ“š PubMed
genus Ruminococcus (NCBI:1263 ) Low n/a Distribution    πŸ“š PubMed
genus Shigella (NCBI:620 ) High n/a Distribution    πŸ“š PubMed
genus Subdoligranulum (NCBI:292632 ) High n/a Distribution    πŸ“š PubMed
genus Turicibacter (NCBI:191303 ) Low n/a Distribution    πŸ“š PubMed
genus Tyzzerella (NCBI:1506577 ) Low n/a Distribution    πŸ“š PubMed
genus Veillonella (NCBI:29465 ) Low n/a Distribution    πŸ“š PubMed
order Desulfovibrionales (NCBI:213115 ) High n/a Distribution    πŸ“š PubMed
order Erysipelotrichales (NCBI:526525 ) High n/a Distribution    πŸ“š PubMed
phylum Actinomycetota (NCBI:201174 ) High n/a Distribution    πŸ“š PubMed
phylum Actinomycetota (NCBI:201174 ) Low n/a Distribution    πŸ“š PubMed
phylum Bacillota (NCBI:1239 ) Low n/a Distribution    πŸ“š PubMed
phylum Bacteroidota (NCBI:976 ) High n/a Distribution    πŸ“š PubMed
phylum Bacteroidota (NCBI:976 ) Low n/a Distribution    πŸ“š PubMed
phylum Cyanobacteriota (NCBI:1117 ) High n/a Distribution    πŸ“š PubMed
phylum Pseudomonadota (NCBI:1224 ) High n/a Distribution    πŸ“š PubMed
phylum Verrucomicrobiota (NCBI:74201 ) High n/a Distribution    πŸ“š PubMed
phylum Verrucomicrobiota (NCBI:74201 ) Low n/a Distribution    πŸ“š PubMed
species [Clostridium] leptum (NCBI:1535 ) High n/a Distribution    πŸ“š PubMed
species [Eubacterium] siraeum (NCBI:39492 ) Low n/a Distribution    πŸ“š PubMed
species [Ruminococcus] torques (NCBI:33039 ) Low n/a Distribution    πŸ“š PubMed
species Agathobacter rectalis (NCBI:39491 ) Low n/a Distribution    πŸ“š PubMed
species Bacillus cereus (NCBI:1396 ) High n/a Distribution    πŸ“š PubMed
species Bacteroides fragilis (NCBI:817 ) High n/a Distribution    πŸ“š PubMed
species Bacteroides fragilis (NCBI:817 ) Low n/a Distribution    πŸ“š PubMed
species Bilophila wadsworthia (NCBI:35833 ) Low n/a Distribution    πŸ“š PubMed
species Dorea longicatena (NCBI:88431 ) High n/a Distribution    πŸ“š PubMed
species Eubacterium coprostanoligenes (NCBI:290054 ) High n/a Distribution    πŸ“š PubMed
species Fusobacterium nucleatum (NCBI:851 ) High n/a Distribution    πŸ“š PubMed
species Intestinimonas butyriciproducens (NCBI:1297617 ) Low n/a Distribution    πŸ“š PubMed
species Phocaeicola plebeius (NCBI:310297 ) High n/a Distribution    πŸ“š PubMed
species Roseburia hominis (NCBI:301301 ) Low n/a Distribution    πŸ“š PubMed
species Thomasclavelia spiroformis (NCBI:29348 ) Low n/a Distribution    πŸ“š PubMed

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