National Library of Medicine Citations for rheumatoid arthritis (RA),Spondyloarthritis (SpA)

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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Note these are associations and not causation. Items being high or low may be part of the immune response.

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A percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary values.

Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Actinomycetia (NCBI:1760 ) High Distribution    📚 PubMed
class Actinomycetia (NCBI:1760 ) High Distribution    📚 PubMed
class Epsilonproteobacteria (NCBI:29547 ) High Distribution    📚 PubMed
class Verrucomicrobiae (NCBI:203494 ) High Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) High Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) High Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) Low Distribution    📚 PubMed
family Barnesiellaceae (NCBI:2005519 ) Low Distribution    📚 PubMed
family Bifidobacteriaceae (NCBI:31953 ) High Distribution    📚 PubMed
family Clostridiaceae (NCBI:31979 ) High Distribution    📚 PubMed
family Clostridiaceae (NCBI:31979 ) Low Distribution    📚 PubMed
family Deferribacteraceae (NCBI:191394 ) High Distribution    📚 PubMed
family Desulfovibrionaceae (NCBI:194924 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Enterococcaceae (NCBI:81852 ) Low Distribution    📚 PubMed
family Erysipelotrichaceae (NCBI:128827 ) High Distribution    📚 PubMed
family Erysipelotrichaceae (NCBI:128827 ) Low Distribution    📚 PubMed
family Gracilibacteraceae (NCBI:541019 ) High Distribution    📚 PubMed
family Helicobacteraceae (NCBI:72293 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Lactobacillaceae (NCBI:33958 ) High Distribution    📚 PubMed
family Lactobacillaceae (NCBI:33958 ) Low Distribution    📚 PubMed
family Lactobacillaceae (NCBI:33958 ) Low Distribution    📚 PubMed
family Muribaculaceae (NCBI:2005473 ) High Distribution    📚 PubMed
family Muribaculaceae (NCBI:2005473 ) Low Distribution    📚 PubMed
family Myoviridae (NCBI:10662 ) High Distribution    📚 PubMed
family Oscillospiraceae (NCBI:216572 ) High Distribution    📚 PubMed
family Peptococcaceae (NCBI:186807 ) High Distribution    📚 PubMed
family Peptostreptococcaceae (NCBI:186804 ) High Distribution    📚 PubMed
family Peptostreptococcaceae (NCBI:186804 ) Low Distribution    📚 PubMed
family phages with long non-contractile tails (NCBI:10699 ) Low Distribution    📚 PubMed
family Planococcaceae (NCBI:186818 ) High Distribution    📚 PubMed
family Prevotellaceae (NCBI:171552 ) High Distribution    📚 PubMed
family Streptococcaceae (NCBI:1300 ) Low Distribution    📚 PubMed
family Veillonellaceae (NCBI:31977 ) High Distribution    📚 PubMed
family Victivallaceae (NCBI:255528 ) High Distribution    📚 PubMed
genus Absiella (NCBI:2057233 ) High Distribution    📚 PubMed
genus Acidaminococcus (NCBI:904 ) Low Distribution    📚 PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) High Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) High Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) Low Distribution    📚 PubMed
genus Allobaculum (NCBI:174708 ) High Distribution    📚 PubMed
genus Alloprevotella (NCBI:1283313 ) Low Distribution    📚 PubMed
genus Alloprevotella (NCBI:1283313 ) Low Distribution    📚 PubMed
genus Alloprevotella (NCBI:1283313 ) Low Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bilophila (NCBI:35832 ) High Distribution    📚 PubMed
genus Bilophila (NCBI:35832 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) High Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) High Distribution    📚 PubMed
genus Candida (NCBI:5475 ) High Distribution    📚 PubMed
genus Citrobacter (NCBI:544 ) High Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) Low Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) High Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) High Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) High Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) High Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) Low Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) High Distribution    📚 PubMed
genus Eisenbergiella (NCBI:1432051 ) High Distribution    📚 PubMed
genus Enterobacter (NCBI:547 ) High Distribution    📚 PubMed
genus Enterobacter (NCBI:547 ) Low Distribution    📚 PubMed
genus Enterobacter (NCBI:547 ) Low Distribution    📚 PubMed
genus Enterobacter (NCBI:547 ) Low Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) Low Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) High Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Flavobacterium (NCBI:237 ) High Distribution    📚 PubMed
genus Flavobacterium (NCBI:237 ) Low Distribution    📚 PubMed
genus Flexispira Bryner 1987 (NCBI:2353 ) High Distribution    📚 PubMed
genus Fusicatenibacter (NCBI:1407607 ) High Distribution    📚 PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) Low Distribution    📚 PubMed
genus Gemella (NCBI:1378 ) Low Distribution    📚 PubMed
genus Gordonibacter (NCBI:644652 ) High Distribution    📚 PubMed
genus Gracilibacter (NCBI:342658 ) High Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) Low Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) Low Distribution    📚 PubMed
genus Helicobacter (NCBI:209 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High Distribution    📚 PubMed
genus Lachnoclostridium (NCBI:1506553 ) Low Distribution    📚 PubMed
genus Lachnospira (NCBI:28050 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Lactococcus (NCBI:1357 ) Low Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) High Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) Low Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) Low Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) High Distribution    📚 PubMed
genus Mucispirillum (NCBI:248038 ) High Distribution    📚 PubMed
genus Mycobacterium (NCBI:1763 ) High Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) High Distribution    📚 PubMed
genus Oscillospira (NCBI:119852 ) High Distribution    📚 PubMed
genus Oxalobacter (NCBI:846 ) High Distribution    📚 PubMed
genus Oxobacter (NCBI:44261 ) High Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) High Distribution    📚 PubMed
genus Parvimonas (NCBI:543311 ) High Distribution    📚 PubMed
genus Pelagibacterium (NCBI:1082930 ) High Distribution    📚 PubMed
genus Peptococcus (NCBI:2740 ) High Distribution    📚 PubMed
genus Phascolarctobacterium (NCBI:33024 ) High Distribution    📚 PubMed
genus Phascolarctobacterium (NCBI:33024 ) Low Distribution    📚 PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    📚 PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    📚 PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    📚 PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Proteus (NCBI:583 ) High Distribution    📚 PubMed
genus Proteus (NCBI:583 ) High Distribution    📚 PubMed
genus Pseudobutyrivibrio (NCBI:46205 ) Low Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) High Distribution    📚 PubMed
genus Pyramidobacter (NCBI:638847 ) High Distribution    📚 PubMed
genus Romboutsia (NCBI:1501226 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) High Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Slackia (NCBI:84108 ) High Distribution    📚 PubMed
genus Solobacterium (NCBI:123375 ) High Distribution    📚 PubMed
genus Staphylococcus (NCBI:1279 ) High Distribution    📚 PubMed
genus Staphylococcus (NCBI:1279 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    📚 PubMed
genus Turicibacter (NCBI:191303 ) High Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) Low Distribution    📚 PubMed
genus Wallemia (NCBI:148959 ) High Distribution    📚 PubMed
norank Porphyromonas gingivalis ATCC 33277 (NCBI:431947 ) High Distribution    📚 PubMed
norank Porphyromonas gingivalis ATCC 33277 (NCBI:431947 ) High Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) High Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) High Distribution    📚 PubMed
order Hypocreales (NCBI:5125 ) High Distribution    📚 PubMed
order Lactobacillales (NCBI:186826 ) High Distribution    📚 PubMed
order Malasseziales (NCBI:162474 ) Low Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Verrucomicrobia (NCBI:74201 ) Low Distribution    📚 PubMed
species [Clostridium] leptum (NCBI:1535 ) Low Distribution    📚 PubMed
species [Clostridium] leptum (NCBI:1535 ) Low Distribution    📚 PubMed
species [Clostridium] scindens (NCBI:29347 ) High Distribution    📚 PubMed
species Actinomyces oris (NCBI:544580 ) High Distribution    📚 PubMed
species Aggregatibacter actinomycetemcomitans (NCBI:714 ) High Distribution    📚 PubMed
species Aggregatibacter actinomycetemcomitans (NCBI:714 ) High Distribution    📚 PubMed
species Asterococcus fermentans (Edward 1955) Prevot 1961 (NCBI:2115 ) High Distribution    📚 PubMed
species Bacteroides fragilis (NCBI:817 ) Low Distribution    📚 PubMed
species Blautia coccoides (NCBI:1532 ) Low Distribution    📚 PubMed
species Collinsella aerofaciens (NCBI:74426 ) High Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Fusobacterium nucleatum (NCBI:851 ) High Distribution    📚 PubMed
species Ligilactobacillus salivarius (NCBI:1624 ) High Distribution    📚 PubMed
species Limosilactobacillus reuteri (NCBI:1598 ) Low Distribution    📚 PubMed
species Porphyromonas gingivalis (NCBI:837 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    📚 PubMed
species Prevotella histicola (NCBI:470565 ) Low Distribution    📚 PubMed
species Ruminococcus gnavus (NCBI:33038 ) High Distribution    📚 PubMed
species group Pseudomonas aeruginosa group (NCBI:136841 ) High Distribution    📚 PubMed
species group Stenotrophomonas maltophilia group (NCBI:995085 ) High Distribution    📚 PubMed

All suggestions are computed solely on their predicted microbiome impact. Safety, side-effects etc must be evaluated by your medical professionals before starting. Some items suggests have significant risk of adverse consequences for some people.

Special thanks to David F Morrison and Geert Van Houcke for doing Quality Assurance. Special thanks to Oliver Luk, B.Sc. (Biology) from BiomeSight for spot checking the coding of data from the US National Library of Medicine

This is an Academic site. It generates theoretical models of what may benefit a specific microbiome results.

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Permission to data scrap or reverse engineer is explicitly denied to all users. U.S. Code Title 18 PART I CHAPTER 47 § 1030, CETS No.185, CFAA
Use of data on this site is prohibited except under written license. There is no charge for individual personal use. Use for any commercial applications or research requires a written license.
Caveat emptor: Analysis and suggestions are based on modelling (and thus infererence) based on studies. The data sources are usually given for those that wish to consider alternative inferences. theories and models.

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