National Library of Medicine Citations for rheumatoid arthritis (RA),Spondyloarthritis (SpA)

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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Note these are associations and not causation. Items being high or low may be part of the immune response.

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A percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary values.

Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Actinomycetia (NCBI:1760 ) High Distribution    ๐Ÿ“š PubMed
class Actinomycetia (NCBI:1760 ) High Distribution    ๐Ÿ“š PubMed
class Epsilonproteobacteria (NCBI:29547 ) High Distribution    ๐Ÿ“š PubMed
class Verrucomicrobiae (NCBI:203494 ) High Distribution    ๐Ÿ“š PubMed
family Bacteroidaceae (NCBI:815 ) High Distribution    ๐Ÿ“š PubMed
family Bacteroidaceae (NCBI:815 ) High Distribution    ๐Ÿ“š PubMed
family Bacteroidaceae (NCBI:815 ) Low Distribution    ๐Ÿ“š PubMed
family Barnesiellaceae (NCBI:2005519 ) Low Distribution    ๐Ÿ“š PubMed
family Bifidobacteriaceae (NCBI:31953 ) High Distribution    ๐Ÿ“š PubMed
family Clostridiaceae (NCBI:31979 ) High Distribution    ๐Ÿ“š PubMed
family Clostridiaceae (NCBI:31979 ) Low Distribution    ๐Ÿ“š PubMed
family Deferribacteraceae (NCBI:191394 ) High Distribution    ๐Ÿ“š PubMed
family Desulfovibrionaceae (NCBI:194924 ) High Distribution    ๐Ÿ“š PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    ๐Ÿ“š PubMed
family Enterococcaceae (NCBI:81852 ) Low Distribution    ๐Ÿ“š PubMed
family Erysipelotrichaceae (NCBI:128827 ) High Distribution    ๐Ÿ“š PubMed
family Erysipelotrichaceae (NCBI:128827 ) Low Distribution    ๐Ÿ“š PubMed
family Gracilibacteraceae (NCBI:541019 ) High Distribution    ๐Ÿ“š PubMed
family Helicobacteraceae (NCBI:72293 ) High Distribution    ๐Ÿ“š PubMed
family Lachnospiraceae (NCBI:186803 ) High Distribution    ๐Ÿ“š PubMed
family Lachnospiraceae (NCBI:186803 ) High Distribution    ๐Ÿ“š PubMed
family Lachnospiraceae (NCBI:186803 ) High Distribution    ๐Ÿ“š PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    ๐Ÿ“š PubMed
family Lactobacillaceae (NCBI:33958 ) High Distribution    ๐Ÿ“š PubMed
family Lactobacillaceae (NCBI:33958 ) Low Distribution    ๐Ÿ“š PubMed
family Lactobacillaceae (NCBI:33958 ) Low Distribution    ๐Ÿ“š PubMed
family Muribaculaceae (NCBI:2005473 ) High Distribution    ๐Ÿ“š PubMed
family Muribaculaceae (NCBI:2005473 ) Low Distribution    ๐Ÿ“š PubMed
family Myoviridae (NCBI:10662 ) High Distribution    ๐Ÿ“š PubMed
family Oscillospiraceae (NCBI:216572 ) High Distribution    ๐Ÿ“š PubMed
family Peptococcaceae (NCBI:186807 ) High Distribution    ๐Ÿ“š PubMed
family Peptostreptococcaceae (NCBI:186804 ) High Distribution    ๐Ÿ“š PubMed
family Peptostreptococcaceae (NCBI:186804 ) Low Distribution    ๐Ÿ“š PubMed
family phages with long non-contractile tails (NCBI:10699 ) Low Distribution    ๐Ÿ“š PubMed
family Planococcaceae (NCBI:186818 ) High Distribution    ๐Ÿ“š PubMed
family Prevotellaceae (NCBI:171552 ) High Distribution    ๐Ÿ“š PubMed
family Streptococcaceae (NCBI:1300 ) Low Distribution    ๐Ÿ“š PubMed
family Veillonellaceae (NCBI:31977 ) High Distribution    ๐Ÿ“š PubMed
family Victivallaceae (NCBI:255528 ) High Distribution    ๐Ÿ“š PubMed
genus Absiella (NCBI:2057233 ) High Distribution    ๐Ÿ“š PubMed
genus Acidaminococcus (NCBI:904 ) Low Distribution    ๐Ÿ“š PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    ๐Ÿ“š PubMed
genus Akkermansia (NCBI:239934 ) High Distribution    ๐Ÿ“š PubMed
genus Akkermansia (NCBI:239934 ) High Distribution    ๐Ÿ“š PubMed
genus Alistipes (NCBI:239759 ) Low Distribution    ๐Ÿ“š PubMed
genus Allobaculum (NCBI:174708 ) High Distribution    ๐Ÿ“š PubMed
genus Alloprevotella (NCBI:1283313 ) Low Distribution    ๐Ÿ“š PubMed
genus Alloprevotella (NCBI:1283313 ) Low Distribution    ๐Ÿ“š PubMed
genus Alloprevotella (NCBI:1283313 ) Low Distribution    ๐Ÿ“š PubMed
genus Aspergillus (NCBI:5052 ) High Distribution    ๐Ÿ“š PubMed
genus Bacteroides (NCBI:816 ) High Distribution    ๐Ÿ“š PubMed
genus Bacteroides (NCBI:816 ) High Distribution    ๐Ÿ“š PubMed
genus Bacteroides (NCBI:816 ) High Distribution    ๐Ÿ“š PubMed
genus Bacteroides (NCBI:816 ) High Distribution    ๐Ÿ“š PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    ๐Ÿ“š PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    ๐Ÿ“š PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    ๐Ÿ“š PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    ๐Ÿ“š PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    ๐Ÿ“š PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    ๐Ÿ“š PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    ๐Ÿ“š PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    ๐Ÿ“š PubMed
genus Bilophila (NCBI:35832 ) High Distribution    ๐Ÿ“š PubMed
genus Bilophila (NCBI:35832 ) High Distribution    ๐Ÿ“š PubMed
genus Blautia (NCBI:572511 ) High Distribution    ๐Ÿ“š PubMed
genus Blautia (NCBI:572511 ) High Distribution    ๐Ÿ“š PubMed
genus Blautia (NCBI:572511 ) High Distribution    ๐Ÿ“š PubMed
genus Blautia (NCBI:572511 ) High Distribution    ๐Ÿ“š PubMed
genus Blautia (NCBI:572511 ) High Distribution    ๐Ÿ“š PubMed
genus Butyricicoccus (NCBI:580596 ) High Distribution    ๐Ÿ“š PubMed
genus Butyrivibrio (NCBI:830 ) High Distribution    ๐Ÿ“š PubMed
genus Candida (NCBI:5475 ) High Distribution    ๐Ÿ“š PubMed
genus Citrobacter (NCBI:544 ) High Distribution    ๐Ÿ“š PubMed
genus Clostridium (NCBI:1485 ) Low Distribution    ๐Ÿ“š PubMed
genus Collinsella (NCBI:102106 ) High Distribution    ๐Ÿ“š PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    ๐Ÿ“š PubMed
genus Coprococcus (NCBI:33042 ) High Distribution    ๐Ÿ“š PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    ๐Ÿ“š PubMed
genus Desulfovibrio (NCBI:872 ) High Distribution    ๐Ÿ“š PubMed
genus Dorea (NCBI:189330 ) High Distribution    ๐Ÿ“š PubMed
genus Dorea (NCBI:189330 ) Low Distribution    ๐Ÿ“š PubMed
genus Eggerthella (NCBI:84111 ) High Distribution    ๐Ÿ“š PubMed
genus Eisenbergiella (NCBI:1432051 ) High Distribution    ๐Ÿ“š PubMed
genus Enterobacter (NCBI:547 ) High Distribution    ๐Ÿ“š PubMed
genus Enterobacter (NCBI:547 ) Low Distribution    ๐Ÿ“š PubMed
genus Enterobacter (NCBI:547 ) Low Distribution    ๐Ÿ“š PubMed
genus Enterobacter (NCBI:547 ) Low Distribution    ๐Ÿ“š PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    ๐Ÿ“š PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    ๐Ÿ“š PubMed
genus Enterococcus (NCBI:1350 ) Low Distribution    ๐Ÿ“š PubMed
genus Escherichia (NCBI:561 ) High Distribution    ๐Ÿ“š PubMed
genus Escherichia (NCBI:561 ) High Distribution    ๐Ÿ“š PubMed
genus Eubacterium (NCBI:1730 ) Low Distribution    ๐Ÿ“š PubMed
genus Faecalibacterium (NCBI:216851 ) High Distribution    ๐Ÿ“š PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    ๐Ÿ“š PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    ๐Ÿ“š PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    ๐Ÿ“š PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    ๐Ÿ“š PubMed
genus Flavobacterium (NCBI:237 ) High Distribution    ๐Ÿ“š PubMed
genus Flavobacterium (NCBI:237 ) Low Distribution    ๐Ÿ“š PubMed
genus Flexispira Bryner 1987 (NCBI:2353 ) High Distribution    ๐Ÿ“š PubMed
genus Fusicatenibacter (NCBI:1407607 ) High Distribution    ๐Ÿ“š PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low Distribution    ๐Ÿ“š PubMed
genus Fusobacterium (NCBI:848 ) Low Distribution    ๐Ÿ“š PubMed
genus Gemella (NCBI:1378 ) Low Distribution    ๐Ÿ“š PubMed
genus Gordonibacter (NCBI:644652 ) High Distribution    ๐Ÿ“š PubMed
genus Gracilibacter (NCBI:342658 ) High Distribution    ๐Ÿ“š PubMed
genus Haemophilus (NCBI:724 ) Low Distribution    ๐Ÿ“š PubMed
genus Haemophilus (NCBI:724 ) Low Distribution    ๐Ÿ“š PubMed
genus Helicobacter (NCBI:209 ) High Distribution    ๐Ÿ“š PubMed
genus Klebsiella (NCBI:570 ) High Distribution    ๐Ÿ“š PubMed
genus Klebsiella (NCBI:570 ) High Distribution    ๐Ÿ“š PubMed
genus Klebsiella (NCBI:570 ) High Distribution    ๐Ÿ“š PubMed
genus Klebsiella (NCBI:570 ) High Distribution    ๐Ÿ“š PubMed
genus Lachnoclostridium (NCBI:1506553 ) Low Distribution    ๐Ÿ“š PubMed
genus Lachnospira (NCBI:28050 ) High Distribution    ๐Ÿ“š PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    ๐Ÿ“š PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    ๐Ÿ“š PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    ๐Ÿ“š PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    ๐Ÿ“š PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    ๐Ÿ“š PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    ๐Ÿ“š PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    ๐Ÿ“š PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    ๐Ÿ“š PubMed
genus Lactococcus (NCBI:1357 ) Low Distribution    ๐Ÿ“š PubMed
genus Megamonas (NCBI:158846 ) High Distribution    ๐Ÿ“š PubMed
genus Megamonas (NCBI:158846 ) Low Distribution    ๐Ÿ“š PubMed
genus Megamonas (NCBI:158846 ) Low Distribution    ๐Ÿ“š PubMed
genus Methanobrevibacter (NCBI:2172 ) High Distribution    ๐Ÿ“š PubMed
genus Mucispirillum (NCBI:248038 ) High Distribution    ๐Ÿ“š PubMed
genus Mycobacterium (NCBI:1763 ) High Distribution    ๐Ÿ“š PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    ๐Ÿ“š PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    ๐Ÿ“š PubMed
genus Oscillibacter (NCBI:459786 ) High Distribution    ๐Ÿ“š PubMed
genus Oscillospira (NCBI:119852 ) High Distribution    ๐Ÿ“š PubMed
genus Oxalobacter (NCBI:846 ) High Distribution    ๐Ÿ“š PubMed
genus Oxobacter (NCBI:44261 ) High Distribution    ๐Ÿ“š PubMed
genus Parabacteroides (NCBI:375288 ) High Distribution    ๐Ÿ“š PubMed
genus Parvimonas (NCBI:543311 ) High Distribution    ๐Ÿ“š PubMed
genus Pelagibacterium (NCBI:1082930 ) High Distribution    ๐Ÿ“š PubMed
genus Peptococcus (NCBI:2740 ) High Distribution    ๐Ÿ“š PubMed
genus Phascolarctobacterium (NCBI:33024 ) High Distribution    ๐Ÿ“š PubMed
genus Phascolarctobacterium (NCBI:33024 ) Low Distribution    ๐Ÿ“š PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    ๐Ÿ“š PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    ๐Ÿ“š PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    ๐Ÿ“š PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    ๐Ÿ“š PubMed
genus Prevotella (NCBI:838 ) High Distribution    ๐Ÿ“š PubMed
genus Prevotella (NCBI:838 ) High Distribution    ๐Ÿ“š PubMed
genus Prevotella (NCBI:838 ) High Distribution    ๐Ÿ“š PubMed
genus Prevotella (NCBI:838 ) High Distribution    ๐Ÿ“š PubMed
genus Prevotella (NCBI:838 ) High Distribution    ๐Ÿ“š PubMed
genus Prevotella (NCBI:838 ) High Distribution    ๐Ÿ“š PubMed
genus Prevotella (NCBI:838 ) High Distribution    ๐Ÿ“š PubMed
genus Prevotella (NCBI:838 ) Low Distribution    ๐Ÿ“š PubMed
genus Proteus (NCBI:583 ) High Distribution    ๐Ÿ“š PubMed
genus Proteus (NCBI:583 ) High Distribution    ๐Ÿ“š PubMed
genus Pseudobutyrivibrio (NCBI:46205 ) Low Distribution    ๐Ÿ“š PubMed
genus Pseudomonas (NCBI:286 ) High Distribution    ๐Ÿ“š PubMed
genus Pyramidobacter (NCBI:638847 ) High Distribution    ๐Ÿ“š PubMed
genus Romboutsia (NCBI:1501226 ) Low Distribution    ๐Ÿ“š PubMed
genus Roseburia (NCBI:841 ) High Distribution    ๐Ÿ“š PubMed
genus Roseburia (NCBI:841 ) Low Distribution    ๐Ÿ“š PubMed
genus Roseburia (NCBI:841 ) Low Distribution    ๐Ÿ“š PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    ๐Ÿ“š PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    ๐Ÿ“š PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    ๐Ÿ“š PubMed
genus Shigella (NCBI:620 ) High Distribution    ๐Ÿ“š PubMed
genus Shigella (NCBI:620 ) High Distribution    ๐Ÿ“š PubMed
genus Slackia (NCBI:84108 ) High Distribution    ๐Ÿ“š PubMed
genus Solobacterium (NCBI:123375 ) High Distribution    ๐Ÿ“š PubMed
genus Staphylococcus (NCBI:1279 ) High Distribution    ๐Ÿ“š PubMed
genus Staphylococcus (NCBI:1279 ) High Distribution    ๐Ÿ“š PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    ๐Ÿ“š PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    ๐Ÿ“š PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    ๐Ÿ“š PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    ๐Ÿ“š PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    ๐Ÿ“š PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    ๐Ÿ“š PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    ๐Ÿ“š PubMed
genus Turicibacter (NCBI:191303 ) High Distribution    ๐Ÿ“š PubMed
genus Veillonella (NCBI:29465 ) Low Distribution    ๐Ÿ“š PubMed
genus Wallemia (NCBI:148959 ) High Distribution    ๐Ÿ“š PubMed
norank Porphyromonas gingivalis ATCC 33277 (NCBI:431947 ) High Distribution    ๐Ÿ“š PubMed
norank Porphyromonas gingivalis ATCC 33277 (NCBI:431947 ) High Distribution    ๐Ÿ“š PubMed
order Eubacteriales (NCBI:186802 ) High Distribution    ๐Ÿ“š PubMed
order Eubacteriales (NCBI:186802 ) High Distribution    ๐Ÿ“š PubMed
order Hypocreales (NCBI:5125 ) High Distribution    ๐Ÿ“š PubMed
order Lactobacillales (NCBI:186826 ) High Distribution    ๐Ÿ“š PubMed
order Malasseziales (NCBI:162474 ) Low Distribution    ๐Ÿ“š PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    ๐Ÿ“š PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    ๐Ÿ“š PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    ๐Ÿ“š PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    ๐Ÿ“š PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    ๐Ÿ“š PubMed
phylum Verrucomicrobia (NCBI:74201 ) Low Distribution    ๐Ÿ“š PubMed
species [Clostridium] leptum (NCBI:1535 ) Low Distribution    ๐Ÿ“š PubMed
species [Clostridium] leptum (NCBI:1535 ) Low Distribution    ๐Ÿ“š PubMed
species [Clostridium] scindens (NCBI:29347 ) High Distribution    ๐Ÿ“š PubMed
species Actinomyces oris (NCBI:544580 ) High Distribution    ๐Ÿ“š PubMed
species Aggregatibacter actinomycetemcomitans (NCBI:714 ) High Distribution    ๐Ÿ“š PubMed
species Aggregatibacter actinomycetemcomitans (NCBI:714 ) High Distribution    ๐Ÿ“š PubMed
species Asterococcus fermentans (Edward 1955) Prevot 1961 (NCBI:2115 ) High Distribution    ๐Ÿ“š PubMed
species Bacteroides fragilis (NCBI:817 ) Low Distribution    ๐Ÿ“š PubMed
species Blautia coccoides (NCBI:1532 ) Low Distribution    ๐Ÿ“š PubMed
species Collinsella aerofaciens (NCBI:74426 ) High Distribution    ๐Ÿ“š PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    ๐Ÿ“š PubMed
species Fusobacterium nucleatum (NCBI:851 ) High Distribution    ๐Ÿ“š PubMed
species Ligilactobacillus salivarius (NCBI:1624 ) High Distribution    ๐Ÿ“š PubMed
species Limosilactobacillus reuteri (NCBI:1598 ) Low Distribution    ๐Ÿ“š PubMed
species Porphyromonas gingivalis (NCBI:837 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella copri (NCBI:165179 ) High Distribution    ๐Ÿ“š PubMed
species Prevotella histicola (NCBI:470565 ) Low Distribution    ๐Ÿ“š PubMed
species Ruminococcus gnavus (NCBI:33038 ) High Distribution    ๐Ÿ“š PubMed
species group Pseudomonas aeruginosa group (NCBI:136841 ) High Distribution    ๐Ÿ“š PubMed
species group Stenotrophomonas maltophilia group (NCBI:995085 ) High Distribution    ๐Ÿ“š PubMed

All suggestions are computed solely on their predicted microbiome impact. Safety, side-effects etc must be evaluated by your medical professionals before starting. Some items suggests have significant risk of adverse consequences for some people.

Special thanks to David F Morrison and Geert Van Houcke for doing Quality Assurance. Special thanks to Oliver Luk, B.Sc. (Biology) from BiomeSight for spot checking the coding of data from the US National Library of Medicine

This is an Academic site. It generates theoretical models of what may benefit a specific microbiome results.

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Caveat emptor: Analysis and suggestions are based on modelling (and thus infererence) based on studies. The data sources are usually given for those that wish to consider alternative inferences. theories and models.

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