National Library of Medicine Citations for Ulcerative colitis

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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Note these are associations and not causation. Items being high or low may be part of the immune response.

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A percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary values.

Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Actinomycetia (NCBI:1760 ) High Distribution    📚 PubMed
class Actinomycetia (NCBI:1760 ) High Distribution    📚 PubMed
class Bacilli (NCBI:91061 ) High Distribution    📚 PubMed
class Bacilli (NCBI:91061 ) High Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) High Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) Low Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) Low Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low Distribution    📚 PubMed
class Coriobacteriia (NCBI:84998 ) Low Distribution    📚 PubMed
class Gammaproteobacteria (NCBI:1236 ) High Distribution    📚 PubMed
class Gammaproteobacteria (NCBI:1236 ) High Distribution    📚 PubMed
class Negativicutes (NCBI:909932 ) Low Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) Low Distribution    📚 PubMed
family Bifidobacteriaceae (NCBI:31953 ) High Distribution    📚 PubMed
family Christensenellaceae (NCBI:990719 ) Low Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Enterococcaceae (NCBI:81852 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Lactobacillaceae (NCBI:33958 ) High Distribution    📚 PubMed
family Muribaculaceae (NCBI:2005473 ) High Distribution    📚 PubMed
family Prevotellaceae (NCBI:171552 ) Low Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) High Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
genus Acinetobacter (NCBI:469 ) High Distribution    📚 PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    📚 PubMed
genus Adlercreutzia (NCBI:447020 ) Low Distribution    📚 PubMed
genus Aeromonas (NCBI:642 ) High Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Anaerofilum (NCBI:52784 ) High Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) High Distribution    📚 PubMed
genus Anaerotruncus (NCBI:244127 ) High Distribution    📚 PubMed
genus Atopobium (NCBI:1380 ) High Distribution    📚 PubMed
genus Bacillus (NCBI:1386 ) High Distribution    📚 PubMed
genus Bacillus (NCBI:55087 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bilophila (NCBI:35832 ) Low Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) Low Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) Low Distribution    📚 PubMed
genus Catenibacterium (NCBI:135858 ) Low Distribution    📚 PubMed
genus Cetobacterium (NCBI:180162 ) High Distribution    📚 PubMed
genus Citrobacter (NCBI:544 ) High Distribution    📚 PubMed
genus Citrobacter (NCBI:544 ) Low Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) High Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) Low Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) Low Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) Low Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Corynebacterium (NCBI:1716 ) High Distribution    📚 PubMed
genus Corynebacterium (NCBI:1716 ) Low Distribution    📚 PubMed
genus Dehalobacterium (NCBI:51514 ) Low Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) Low Distribution    📚 PubMed
genus Dialister (NCBI:39948 ) Low Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) High Distribution    📚 PubMed
genus Enterobacter (NCBI:547 ) Low Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) Low Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Finegoldia (NCBI:150022 ) High Distribution    📚 PubMed
genus Gemella (NCBI:1378 ) High Distribution    📚 PubMed
genus Granulicatella (NCBI:117563 ) High Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactococcus (NCBI:1357 ) High Distribution    📚 PubMed
genus Leuconostoc (NCBI:1243 ) High Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) Low Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) High Distribution    📚 PubMed
genus Methanobrevibacter (NCBI:2172 ) Low Distribution    📚 PubMed
genus Morganella (NCBI:581 ) High Distribution    📚 PubMed
genus Neisseria (NCBI:482 ) High Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    📚 PubMed
genus Oribacterium (NCBI:265975 ) High Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) High Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) Low Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) Low Distribution    📚 PubMed
genus Parvimonas (NCBI:543311 ) Low Distribution    📚 PubMed
genus Peptoniphilus (NCBI:162289 ) High Distribution    📚 PubMed
genus Peptostreptococcus (NCBI:1257 ) High Distribution    📚 PubMed
genus Phascolarctobacterium (NCBI:33024 ) Low Distribution    📚 PubMed
genus Porphyromonas (NCBI:836 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Rothia (NCBI:32207 ) High Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Solobacterium (NCBI:123375 ) High Distribution    📚 PubMed
genus Staphylococcus (NCBI:1279 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) High Distribution    📚 PubMed
genus Weissella (NCBI:46255 ) High Distribution    📚 PubMed
order Bacteroidales (NCBI:171549 ) Low Distribution    📚 PubMed
order Bifidobacteriales (NCBI:85004 ) High Distribution    📚 PubMed
order Coriobacteriales (NCBI:84999 ) High Distribution    📚 PubMed
order Enterobacterales (NCBI:91347 ) High Distribution    📚 PubMed
order Enterobacterales (NCBI:91347 ) High Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) Low Distribution    📚 PubMed
order Lactobacillales (NCBI:186826 ) High Distribution    📚 PubMed
order Lactobacillales (NCBI:186826 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Bacteroidetes (NCBI:976 ) Low Distribution    📚 PubMed
phylum Bacteroidetes (NCBI:976 ) Low Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) High Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Verrucomicrobia (NCBI:74201 ) Low Distribution    📚 PubMed
species [Clostridium] innocuum (NCBI:1522 ) High Distribution    📚 PubMed
species Adlercreutzia equolifaciens (NCBI:446660 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Bacteroides ovatus (NCBI:28116 ) Low Distribution    📚 PubMed
species Bacteroides uniformis (NCBI:820 ) Low Distribution    📚 PubMed
species Bifidobacterium bifidum (NCBI:1681 ) Low Distribution    📚 PubMed
species Blautia producta (NCBI:33035 ) Low Distribution    📚 PubMed
species Clostridium butyricum (NCBI:1492 ) Low Distribution    📚 PubMed
species Clostridium butyricum (NCBI:1492 ) Low Distribution    📚 PubMed
species Escherichia coli (NCBI:562 ) High Distribution    📚 PubMed
species Escherichia coli (NCBI:562 ) High Distribution    📚 PubMed
species Eubacterium ventriosum (NCBI:39496 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Francisella tularensis (NCBI:263 ) High Distribution    📚 PubMed
species Lactiplantibacillus plantarum (NCBI:1590 ) Low Distribution    📚 PubMed
species Latilactobacillus sakei (NCBI:1599 ) Low Distribution    📚 PubMed
species Mucispirillum schaedleri (NCBI:248039 ) High Distribution    📚 PubMed
species Phocaeicola vulgatus (NCBI:821 ) Low Distribution    📚 PubMed
species Prevotella copri (NCBI:165179 ) Low Distribution    📚 PubMed

All suggestions are computed solely on their predicted microbiome impact. Safety, side-effects etc must be evaluated by your medical professionals before starting. Some items suggests have significant risk of adverse consequences for some people.

Special thanks to David F Morrison and Geert Van Houcke for doing Quality Assurance. Special thanks to Oliver Luk, B.Sc. (Biology) from BiomeSight for spot checking the coding of data from the US National Library of Medicine

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