National Library of Medicine Citations for COVID-19

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

AI Engines For more Details: Perplexity  Kagi Labs  You 

Note these are associations and not causation. Items being high or low may be part of the immune response.

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A percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary values.

Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Actinomycetia (NCBI:1760 ) High Distribution    📚 PubMed
class Agaricomycetes (NCBI:155619 ) High Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) High Distribution    📚 PubMed
class Epsilonproteobacteria (NCBI:29547 ) High Distribution    📚 PubMed
class Fusobacteriia (NCBI:203490 ) Low Distribution    📚 PubMed
family Aerococcaceae (NCBI:186827 ) High Distribution    📚 PubMed
family Aeromonadaceae (NCBI:84642 ) Low Distribution    📚 PubMed
family Carnobacteriaceae (NCBI:186828 ) Low Distribution    📚 PubMed
family Coriobacteriaceae (NCBI:84107 ) Low Distribution    📚 PubMed
family Corynebacteriaceae (NCBI:1653 ) High Distribution    📚 PubMed
family Dermabacteraceae (NCBI:85020 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Moraxellaceae (NCBI:468 ) Low Distribution    📚 PubMed
family Mycoplasmataceae (NCBI:2092 ) Low Distribution    📚 PubMed
family Nitrospiraceae (NCBI:189779 ) Low Distribution    📚 PubMed
family Peptostreptococcaceae (NCBI:186804 ) High Distribution    📚 PubMed
family Propionibacteriaceae (NCBI:31957 ) Low Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
family Staphylococcaceae (NCBI:90964 ) High Distribution    📚 PubMed
family Vibrionaceae (NCBI:641 ) High Distribution    📚 PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    📚 PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    📚 PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    📚 PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    📚 PubMed
genus Agathobacter (NCBI:1766253 ) Low Distribution    📚 PubMed
genus Agathobacter (NCBI:1766253 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) Low Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) Low Distribution    📚 PubMed
genus Anaerococcus (NCBI:165779 ) Low Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) High Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) Low Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) Low Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) High Distribution    📚 PubMed
genus Aspergillus (NCBI:5052 ) Low Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Burkholderia (NCBI:32008 ) High Distribution    📚 PubMed
genus Burkholderia (NCBI:32008 ) High Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) Low Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) Low Distribution    📚 PubMed
genus Campylobacter (NCBI:194 ) High Distribution    📚 PubMed
genus Campylobacter (NCBI:194 ) High Distribution    📚 PubMed
genus Candida (NCBI:5475 ) High Distribution    📚 PubMed
genus Candida (NCBI:1535326 ) High Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) High Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) High Distribution    📚 PubMed
genus Clostridium (NCBI:1485 ) High Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacter (NCBI:1348911 ) High Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Corynebacterium (NCBI:1716 ) High Distribution    📚 PubMed
genus Corynebacterium (NCBI:1716 ) High Distribution    📚 PubMed
genus Dialister (NCBI:39948 ) High Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) Low Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) High Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) High Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) High Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) Low Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) Low Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) High Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) High Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) High Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Finegoldia (NCBI:150022 ) High Distribution    📚 PubMed
genus Finegoldia (NCBI:150022 ) High Distribution    📚 PubMed
genus Finegoldia (NCBI:150022 ) Low Distribution    📚 PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low Distribution    📚 PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) High Distribution    📚 PubMed
genus Granulicatella (NCBI:117563 ) High Distribution    📚 PubMed
genus Granulicatella (NCBI:117563 ) Low Distribution    📚 PubMed
genus Herbaspirillum (NCBI:963 ) High Distribution    📚 PubMed
genus Herbaspirillum (NCBI:963 ) High Distribution    📚 PubMed
genus Lachnoclostridium (NCBI:1506553 ) High Distribution    📚 PubMed
genus Lachnoclostridium (NCBI:1506553 ) Low Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Neisseria (NCBI:482 ) High Distribution    📚 PubMed
genus Neisseria (NCBI:482 ) High Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) High Distribution    📚 PubMed
genus Parasutterella (NCBI:577310 ) High Distribution    📚 PubMed
genus Porphyromonas (NCBI:836 ) Low Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) High Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) High Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) High Distribution    📚 PubMed
genus Pseudomonas (NCBI:286 ) High Distribution    📚 PubMed
genus Romboutsia (NCBI:1501226 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Rothia (NCBI:32207 ) High Distribution    📚 PubMed
genus Rothia (NCBI:32207 ) High Distribution    📚 PubMed
genus Rothia (NCBI:32207 ) High Distribution    📚 PubMed
genus Rothia (NCBI:32207 ) High Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) High Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low Distribution    📚 PubMed
genus Ruthenibacterium (NCBI:1905344 ) High Distribution    📚 PubMed
genus Shigella (NCBI:620 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) Low Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) Low Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High Distribution    📚 PubMed
genus Weissella (NCBI:46255 ) High Distribution    📚 PubMed
order Spirochaetales (NCBI:136 ) Low Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) Low Distribution    📚 PubMed
phylum Ascomycota (NCBI:4890 ) High Distribution    📚 PubMed
phylum Bacteroidetes (NCBI:976 ) High Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) High Distribution    📚 PubMed
phylum Fusobacteria (NCBI:32066 ) High Distribution    📚 PubMed
phylum Fusobacteria (NCBI:32066 ) Low Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) Low Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) Low Distribution    📚 PubMed
species [Clostridium] colinum (NCBI:36835 ) Low Distribution    📚 PubMed
species [Clostridium] innocuum (NCBI:1522 ) High Distribution    📚 PubMed
species [Clostridium] leptum (NCBI:1535 ) Low Distribution    📚 PubMed
species [Clostridium] leptum (NCBI:1535 ) Low Distribution    📚 PubMed
species [Clostridium] piliforme (NCBI:1524 ) High Distribution    📚 PubMed
species [Eubacterium] rectale (NCBI:39491 ) Low Distribution    📚 PubMed
species [Eubacterium] rectale (NCBI:39491 ) Low Distribution    📚 PubMed
species Acinetobacter bereziniae (NCBI:106648 ) High Distribution    📚 PubMed
species Actinomyces viscosus (NCBI:1656 ) High Distribution    📚 PubMed
species Actinomyces viscosus (NCBI:1656 ) High Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Akkermansia muciniphila (NCBI:239935 ) Low Distribution    📚 PubMed
species Alistipes finegoldii (NCBI:214856 ) High Distribution    📚 PubMed
species Alistipes indistinctus (NCBI:626932 ) Low Distribution    📚 PubMed
species Alistipes indistinctus (NCBI:626932 ) Low Distribution    📚 PubMed
species Alistipes putredinis (NCBI:28117 ) Low Distribution    📚 PubMed
species Alistipes shahii (NCBI:328814 ) Low Distribution    📚 PubMed
species Alistipes shahii (NCBI:328814 ) Low Distribution    📚 PubMed
species Alloprevotella tannerae (NCBI:76122 ) High Distribution    📚 PubMed
species Anaerobutyricum hallii (NCBI:39488 ) Low Distribution    📚 PubMed
species Anaerobutyricum hallii (NCBI:39488 ) Low Distribution    📚 PubMed
species Aspergillus flavus (NCBI:5059 ) High Distribution    📚 PubMed
species Aspergillus flavus (NCBI:5059 ) High Distribution    📚 PubMed
species Aspergillus flavus (NCBI:5059 ) High Distribution    📚 PubMed
species Aspergillus flavus (NCBI:5059 ) High Distribution    📚 PubMed
species ATCC 22019 (NCBI:5480 ) Low Distribution    📚 PubMed
species Bacteroides caccae (NCBI:47678 ) Low Distribution    📚 PubMed
species Bacteroides cellulosilyticus (NCBI:246787 ) Low Distribution    📚 PubMed
species Bacteroides eggerthii (NCBI:28111 ) Low Distribution    📚 PubMed
species Bacteroides graminisolvens (NCBI:477666 ) High Distribution    📚 PubMed
species Bacteroides luti (NCBI:1297750 ) Low Distribution    📚 PubMed
species Bacteroides nordii (NCBI:291645 ) High Distribution    📚 PubMed
species Bacteroides nordii (NCBI:291645 ) High Distribution    📚 PubMed
species Bacteroides ovatus (NCBI:28116 ) High Distribution    📚 PubMed
species Bacteroides ovatus (NCBI:28116 ) Low Distribution    📚 PubMed
species Bacteroides salyersiae (NCBI:291644 ) Low Distribution    📚 PubMed
species Bacteroides stercoris (NCBI:46506 ) High Distribution    📚 PubMed
species Bacteroides thetaiotaomicron (NCBI:818 ) High Distribution    📚 PubMed
species Bacteroides thetaiotaomicron (NCBI:818 ) Low Distribution    📚 PubMed
species Bacteroides thetaiotaomicron (NCBI:818 ) Low Distribution    📚 PubMed
species Bacteroides thetaiotaomicron (NCBI:818 ) Low Distribution    📚 PubMed
species Bacteroides uniformis (NCBI:820 ) High Distribution    📚 PubMed
species Bacteroides uniformis (NCBI:820 ) High Distribution    📚 PubMed
species Bacteroides uniformis (NCBI:820 ) Low Distribution    📚 PubMed
species Bifidobacterium adolescentis (NCBI:1680 ) High Distribution    📚 PubMed
species Bifidobacterium adolescentis (NCBI:1680 ) Low Distribution    📚 PubMed
species Bifidobacterium bifidum (NCBI:1681 ) Low Distribution    📚 PubMed
species Bifidobacterium bifidum (NCBI:1681 ) Low Distribution    📚 PubMed
species Bifidobacterium longum (NCBI:216816 ) High Distribution    📚 PubMed
species Blastocystis hominis (NCBI:12968 ) Low Distribution    📚 PubMed
species Blautia hominis (NCBI:2025493 ) Low Distribution    📚 PubMed
species Blautia obeum (NCBI:40520 ) Low Distribution    📚 PubMed
species Blautia obeum (NCBI:40520 ) Low Distribution    📚 PubMed
species Candida albicans (NCBI:5476 ) High Distribution    📚 PubMed
species Candida albicans (NCBI:5476 ) High Distribution    📚 PubMed
species CBS 316 (NCBI:5537 ) High Distribution    📚 PubMed
species CBS 316 (NCBI:5537 ) Low Distribution    📚 PubMed
species Clostridium butyricum (NCBI:1492 ) Low Distribution    📚 PubMed
species Clostridium butyricum (NCBI:1492 ) Low Distribution    📚 PubMed
species Coprobacter fastidiosus (NCBI:1099853 ) Low Distribution    📚 PubMed
species Coprobacter fastidiosus (NCBI:1099853 ) Low Distribution    📚 PubMed
species Dorea formicigenerans (NCBI:39486 ) High Distribution    📚 PubMed
species Dorea formicigenerans (NCBI:39486 ) Low Distribution    📚 PubMed
species Dorea formicigenerans (NCBI:39486 ) Low Distribution    📚 PubMed
species Dorea longicatena (NCBI:88431 ) Low Distribution    📚 PubMed
species Eggerthella lenta (NCBI:84112 ) High Distribution    📚 PubMed
species Enterobacter cloacae (NCBI:550 ) Low Distribution    📚 PubMed
species Enterobacter cloacae (NCBI:550 ) Low Distribution    📚 PubMed
species Enterocloster citroniae (NCBI:358743 ) High Distribution    📚 PubMed
species Enterocloster clostridioformis (NCBI:1531 ) Low Distribution    📚 PubMed
species Enterocloster clostridioformis (NCBI:1531 ) Low Distribution    📚 PubMed
species Enterococcus faecium (NCBI:1352 ) Low Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) Low Distribution    📚 PubMed
species Eubacterium limosum (NCBI:1736 ) Low Distribution    📚 PubMed
species Eubacterium limosum (NCBI:1736 ) Low Distribution    📚 PubMed
species Eubacterium ventriosum (NCBI:39496 ) Low Distribution    📚 PubMed
species Eubacterium ventriosum (NCBI:39496 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Gemmiger formicilis (NCBI:745368 ) Low Distribution    📚 PubMed
species Hungatella hathewayi (NCBI:154046 ) High Distribution    📚 PubMed
species Hungatella hathewayi (NCBI:154046 ) High Distribution    📚 PubMed
species Hungatella hathewayi (NCBI:154046 ) High Distribution    📚 PubMed
species Hungatella hathewayi (NCBI:154046 ) High Distribution    📚 PubMed
species Lachnospira eligens (NCBI:39485 ) Low Distribution    📚 PubMed
species Lawsonibacter asaccharolyticus (NCBI:2108523 ) Low Distribution    📚 PubMed
species Odoribacter splanchnicus (NCBI:28118 ) Low Distribution    📚 PubMed
species Parasutterella excrementihominis (NCBI:487175 ) Low Distribution    📚 PubMed
species Phocaeicola coprophilus (NCBI:387090 ) High Distribution    📚 PubMed
species Phocaeicola coprophilus (NCBI:387090 ) High Distribution    📚 PubMed
species Phocaeicola coprophilus (NCBI:387090 ) Low Distribution    📚 PubMed
species Phocaeicola dorei (NCBI:357276 ) High Distribution    📚 PubMed
species Phocaeicola dorei (NCBI:357276 ) Low Distribution    📚 PubMed
species Phocaeicola dorei (NCBI:357276 ) Low Distribution    📚 PubMed
species Phocaeicola dorei (NCBI:357276 ) Low Distribution    📚 PubMed
species Phocaeicola massiliensis (NCBI:204516 ) Low Distribution    📚 PubMed
species Phocaeicola massiliensis (NCBI:204516 ) Low Distribution    📚 PubMed
species Phocaeicola massiliensis (NCBI:204516 ) Low Distribution    📚 PubMed
species Phocaeicola plebeius (NCBI:310297 ) High Distribution    📚 PubMed
species Pseudomonas veronii (NCBI:76761 ) High Distribution    📚 PubMed
species Roseburia intestinalis (NCBI:166486 ) Low Distribution    📚 PubMed
species Ruminococcus albus (NCBI:1264 ) High Distribution    📚 PubMed
species Ruminococcus bromii (NCBI:40518 ) Low Distribution    📚 PubMed
species Staphylococcus epidermidis (NCBI:1282 ) High Distribution    📚 PubMed
species Tyzzerella nexilis (NCBI:29361 ) Low Distribution    📚 PubMed
species Veillonella dispar (NCBI:39778 ) Low Distribution    📚 PubMed
species Veillonella dispar (NCBI:39778 ) Low Distribution    📚 PubMed

All suggestions are computed solely on their predicted microbiome impact. Safety, side-effects etc must be evaluated by your medical professionals before starting. Some items suggests have significant risk of adverse consequences for some people.

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Use of data on this site is prohibited except under written license. There is no charge for individual personal use. Use for any commercial applications or research requires a written license.
Caveat emptor: Analysis and suggestions are based on modelling (and thus infererence) based on studies. The data sources are usually given for those that wish to consider alternative inferences. theories and models.

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