National Library of Medicine Citations for Long COVID

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

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A percentile below 20% can be deemed to be low, and above 80% as high. These are arbitrary values.

Tax Rank Tax Name Shift Percentile Distribution Citation Link
class Acidimicrobiia (NCBI:84992 ) High Distribution    📚 PubMed
class Actinomycetia (NCBI:1760 ) High Distribution    📚 PubMed
class Bacilli (NCBI:91061 ) High Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) High Distribution    📚 PubMed
class Bacteroidia (NCBI:200643 ) Low Distribution    📚 PubMed
class Clostridia (NCBI:186801 ) Low Distribution    📚 PubMed
class Coriobacteriia (NCBI:84998 ) High Distribution    📚 PubMed
class Coriobacteriia (NCBI:84998 ) Low Distribution    📚 PubMed
class Fusobacteriia (NCBI:203490 ) High Distribution    📚 PubMed
class Gammaproteobacteria (NCBI:1236 ) High Distribution    📚 PubMed
class Negativicutes (NCBI:909932 ) Low Distribution    📚 PubMed
family Acidaminococcaceae (NCBI:909930 ) Low Distribution    📚 PubMed
family Actinomycetaceae (NCBI:2049 ) High Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) High Distribution    📚 PubMed
family Bacteroidaceae (NCBI:815 ) Low Distribution    📚 PubMed
family Barnesiellaceae (NCBI:2005519 ) Low Distribution    📚 PubMed
family Barnesiellaceae (NCBI:2005519 ) Low Distribution    📚 PubMed
family Bifidobacteriaceae (NCBI:31953 ) High Distribution    📚 PubMed
family Bifidobacteriaceae (NCBI:31953 ) High Distribution    📚 PubMed
family Campylobacteraceae (NCBI:72294 ) High Distribution    📚 PubMed
family Carnobacteriaceae (NCBI:186828 ) High Distribution    📚 PubMed
family Christensenellaceae (NCBI:990719 ) High Distribution    📚 PubMed
family Christensenellaceae (NCBI:990719 ) Low Distribution    📚 PubMed
family Clostridiaceae (NCBI:31979 ) High Distribution    📚 PubMed
family Clostridiaceae (NCBI:31979 ) High Distribution    📚 PubMed
family Comamonadaceae (NCBI:80864 ) Low Distribution    📚 PubMed
family Coriobacteriaceae (NCBI:84107 ) High Distribution    📚 PubMed
family Coriobacteriaceae (NCBI:84107 ) High Distribution    📚 PubMed
family Coriobacteriaceae (NCBI:84107 ) Low Distribution    📚 PubMed
family Corynebacteriaceae (NCBI:1653 ) Low Distribution    📚 PubMed
family Desulfovibrionaceae (NCBI:194924 ) Low Distribution    📚 PubMed
family Eggerthellaceae (NCBI:1643826 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Enterobacteriaceae (NCBI:543 ) High Distribution    📚 PubMed
family Enterococcaceae (NCBI:81852 ) High Distribution    📚 PubMed
family Enterococcaceae (NCBI:81852 ) High Distribution    📚 PubMed
family Erysipelotrichaceae (NCBI:128827 ) High Distribution    📚 PubMed
family Erysipelotrichaceae (NCBI:128827 ) Low Distribution    📚 PubMed
family Erysipelotrichaceae (NCBI:128827 ) Low Distribution    📚 PubMed
family Eubacteriaceae (NCBI:186806 ) High Distribution    📚 PubMed
family Eubacteriaceae (NCBI:186806 ) Low Distribution    📚 PubMed
family Fusobacteriaceae (NCBI:203492 ) High Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Lachnospiraceae (NCBI:186803 ) Low Distribution    📚 PubMed
family Lactobacillaceae (NCBI:33958 ) High Distribution    📚 PubMed
family Leuconostocaceae (NCBI:81850 ) Low Distribution    📚 PubMed
family Marinifilaceae (NCBI:1573805 ) Low Distribution    📚 PubMed
family Methylobacteriaceae (NCBI:119045 ) Low Distribution    📚 PubMed
family Micrococcaceae (NCBI:1268 ) High Distribution    📚 PubMed
family Micrococcaceae (NCBI:1268 ) High Distribution    📚 PubMed
family Neisseriaceae (NCBI:481 ) High Distribution    📚 PubMed
family Oscillospiraceae (NCBI:216572 ) Low Distribution    📚 PubMed
family Oscillospiraceae (NCBI:216572 ) Low Distribution    📚 PubMed
family Pasteurellaceae (NCBI:712 ) High Distribution    📚 PubMed
family Peptococcaceae (NCBI:186807 ) Low Distribution    📚 PubMed
family Peptoniphilaceae (NCBI:1570339 ) High Distribution    📚 PubMed
family Peptostreptococcaceae (NCBI:186804 ) High Distribution    📚 PubMed
family Peptostreptococcaceae (NCBI:186804 ) Low Distribution    📚 PubMed
family Porphyromonadaceae (NCBI:171551 ) High Distribution    📚 PubMed
family Prevotellaceae (NCBI:171552 ) Low Distribution    📚 PubMed
family Prevotellaceae (NCBI:171552 ) Low Distribution    📚 PubMed
family Rhodospirillaceae (NCBI:41295 ) Low Distribution    📚 PubMed
family Rikenellaceae (NCBI:171550 ) Low Distribution    📚 PubMed
family Rikenellaceae (NCBI:171550 ) Low Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) High Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
family Ruminococcaceae (NCBI:541000 ) Low Distribution    📚 PubMed
family Streptococcaceae (NCBI:1300 ) High Distribution    📚 PubMed
family Streptococcaceae (NCBI:1300 ) High Distribution    📚 PubMed
family Sutterellaceae (NCBI:995019 ) High Distribution    📚 PubMed
family Synergistaceae (NCBI:649777 ) Low Distribution    📚 PubMed
family Tannerellaceae (NCBI:2005525 ) Low Distribution    📚 PubMed
family Veillonellaceae (NCBI:31977 ) High Distribution    📚 PubMed
family Veillonellaceae (NCBI:31977 ) Low Distribution    📚 PubMed
family Verrucomicrobiaceae (NCBI:203557 ) High Distribution    📚 PubMed
family Victivallaceae (NCBI:255528 ) High Distribution    📚 PubMed
genus Acetanaerobacterium (NCBI:258514 ) High Distribution    📚 PubMed
genus Acidaminococcus (NCBI:904 ) Low Distribution    📚 PubMed
genus Actinomyces (NCBI:1654 ) High Distribution    📚 PubMed
genus Adlercreutzia (NCBI:447020 ) High Distribution    📚 PubMed
genus Adlercreutzia (NCBI:447020 ) Low Distribution    📚 PubMed
genus Agathobacter (NCBI:1766253 ) High Distribution    📚 PubMed
genus Agathobacter (NCBI:1766253 ) Low Distribution    📚 PubMed
genus Akkermansia (NCBI:239934 ) High Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) Low Distribution    📚 PubMed
genus Alistipes (NCBI:239759 ) Low Distribution    📚 PubMed
genus Allisonella (NCBI:209879 ) Low Distribution    📚 PubMed
genus Anaerofilum (NCBI:52784 ) High Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) Low Distribution    📚 PubMed
genus Anaerostipes (NCBI:207244 ) Low Distribution    📚 PubMed
genus Anaerotruncus (NCBI:244127 ) High Distribution    📚 PubMed
genus Asaccharobacter (NCBI:553372 ) High Distribution    📚 PubMed
genus Atopobium (NCBI:1380 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) High Distribution    📚 PubMed
genus Bacteroides (NCBI:816 ) Low Distribution    📚 PubMed
genus Barnesiella (NCBI:397864 ) Low Distribution    📚 PubMed
genus Barnesiella (NCBI:397864 ) Low Distribution    📚 PubMed
genus Barnesiella (NCBI:397864 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) High Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bifidobacterium (NCBI:1678 ) Low Distribution    📚 PubMed
genus Bilophila (NCBI:35832 ) Low Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) High Distribution    📚 PubMed
genus Blautia (NCBI:572511 ) Low Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) Low Distribution    📚 PubMed
genus Butyricicoccus (NCBI:580596 ) Low Distribution    📚 PubMed
genus Butyricimonas (NCBI:574697 ) Low Distribution    📚 PubMed
genus Butyricimonas (NCBI:574697 ) Low Distribution    📚 PubMed
genus Butyrivibrio (NCBI:830 ) Low Distribution    📚 PubMed
genus Campylobacter (NCBI:194 ) High Distribution    📚 PubMed
genus Catenibacterium (NCBI:135858 ) High Distribution    📚 PubMed
genus Cetobacterium (NCBI:180162 ) Low Distribution    📚 PubMed
genus Christensenella (NCBI:990721 ) Low Distribution    📚 PubMed
genus Citrobacter (NCBI:544 ) High Distribution    📚 PubMed
genus Citrobacter (NCBI:544 ) Low Distribution    📚 PubMed
genus Cloacibacillus (NCBI:508459 ) Low Distribution    📚 PubMed
genus Colidextribacter (NCBI:1980681 ) Low Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) High Distribution    📚 PubMed
genus Collinsella (NCBI:102106 ) Low Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacillus (NCBI:100883 ) High Distribution    📚 PubMed
genus Coprobacter (NCBI:1348911 ) High Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Coprococcus (NCBI:33042 ) Low Distribution    📚 PubMed
genus Corynebacterium (NCBI:1716 ) High Distribution    📚 PubMed
genus Corynebacterium (NCBI:1716 ) Low Distribution    📚 PubMed
genus Cronobacter (NCBI:413496 ) High Distribution    📚 PubMed
genus Desulfovibrio (NCBI:872 ) Low Distribution    📚 PubMed
genus Dialister (NCBI:39948 ) Low Distribution    📚 PubMed
genus Dorea (NCBI:189330 ) Low Distribution    📚 PubMed
genus Dysgonomonas (NCBI:156973 ) High Distribution    📚 PubMed
genus Eggerthella (NCBI:84111 ) High Distribution    📚 PubMed
genus Eisenbergiella (NCBI:1432051 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Enterococcus (NCBI:1350 ) High Distribution    📚 PubMed
genus Erysipelatoclostridium (NCBI:1505663 ) High Distribution    📚 PubMed
genus Escherichia (NCBI:561 ) High Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) High Distribution    📚 PubMed
genus Eubacterium (NCBI:1730 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) High Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalibacterium (NCBI:216851 ) Low Distribution    📚 PubMed
genus Faecalicoccus (NCBI:1573536 ) High Distribution    📚 PubMed
genus Flavonifractor (NCBI:946234 ) High Distribution    📚 PubMed
genus Flavonifractor (NCBI:946234 ) High Distribution    📚 PubMed
genus Flavonifractor (NCBI:946234 ) High Distribution    📚 PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low Distribution    📚 PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low Distribution    📚 PubMed
genus Fusicatenibacter (NCBI:1407607 ) Low Distribution    📚 PubMed
genus Fusobacterium (NCBI:848 ) High Distribution    📚 PubMed
genus Gemella (NCBI:1378 ) High Distribution    📚 PubMed
genus Gemmiger (NCBI:204475 ) High Distribution    📚 PubMed
genus Granulicatella (NCBI:117563 ) High Distribution    📚 PubMed
genus Haemophilus (NCBI:724 ) High Distribution    📚 PubMed
genus Holdemania (NCBI:61170 ) High Distribution    📚 PubMed
genus Howardella (NCBI:404402 ) Low Distribution    📚 PubMed
genus Hydrogenophaga (NCBI:47420 ) Low Distribution    📚 PubMed
genus Intestinibacter (NCBI:1505657 ) High Distribution    📚 PubMed
genus Intestinibacter (NCBI:1505657 ) High Distribution    📚 PubMed
genus Intestinimonas (NCBI:1392389 ) Low Distribution    📚 PubMed
genus Klebsiella (NCBI:570 ) Low Distribution    📚 PubMed
genus Kluyvera (NCBI:579 ) Low Distribution    📚 PubMed
genus Lachnoanaerobaculum (NCBI:1164882 ) High Distribution    📚 PubMed
genus Lachnoclostridium (NCBI:1506553 ) Low Distribution    📚 PubMed
genus Lachnospira (NCBI:28050 ) High Distribution    📚 PubMed
genus Lachnospira (NCBI:28050 ) Low Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) High Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Lactobacillus (NCBI:1578 ) Low Distribution    📚 PubMed
genus Lactonifactor (NCBI:420345 ) Low Distribution    📚 PubMed
genus Megamonas (NCBI:158846 ) High Distribution    📚 PubMed
genus Megasphaera (NCBI:906 ) Low Distribution    📚 PubMed
genus Microthrix (NCBI:41949 ) High Distribution    📚 PubMed
genus Mogibacterium (NCBI:86331 ) Low Distribution    📚 PubMed
genus Monoglobus (NCBI:2039302 ) Low Distribution    📚 PubMed
genus Morganella (NCBI:581 ) High Distribution    📚 PubMed
genus Neisseria (NCBI:482 ) High Distribution    📚 PubMed
genus Neomegalonema (NCBI:356797 ) Low Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) High Distribution    📚 PubMed
genus Odoribacter (NCBI:283168 ) Low Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) Low Distribution    📚 PubMed
genus Oscillibacter (NCBI:459786 ) Low Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) High Distribution    📚 PubMed
genus Parabacteroides (NCBI:375288 ) Low Distribution    📚 PubMed
genus Paraprevotella (NCBI:577309 ) High Distribution    📚 PubMed
genus Paraprevotella (NCBI:577309 ) Low Distribution    📚 PubMed
genus Parasutterella (NCBI:577310 ) High Distribution    📚 PubMed
genus Pediococcus (NCBI:1253 ) High Distribution    📚 PubMed
genus Peptococcus (NCBI:2740 ) Low Distribution    📚 PubMed
genus Peptoniphilus (NCBI:162289 ) High Distribution    📚 PubMed
genus Peptostreptococcus (NCBI:1257 ) High Distribution    📚 PubMed
genus Phascolarctobacterium (NCBI:33024 ) Low Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Prevotella (NCBI:838 ) Low Distribution    📚 PubMed
genus Propionispira (NCBI:84034 ) High Distribution    📚 PubMed
genus Proteus (NCBI:210425 ) High Distribution    📚 PubMed
genus Proteus (NCBI:583 ) High Distribution    📚 PubMed
genus Pseudobutyrivibrio (NCBI:46205 ) Low Distribution    📚 PubMed
genus Pseudoflavonifractor (NCBI:1017280 ) High Distribution    📚 PubMed
genus Pyramidobacter (NCBI:638847 ) Low Distribution    📚 PubMed
genus Raoultella (NCBI:160674 ) High Distribution    📚 PubMed
genus Robinsoniella (NCBI:588605 ) High Distribution    📚 PubMed
genus Romboutsia (NCBI:1501226 ) High Distribution    📚 PubMed
genus Romboutsia (NCBI:1501226 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Roseburia (NCBI:841 ) Low Distribution    📚 PubMed
genus Rothia (NCBI:32207 ) High Distribution    📚 PubMed
genus Rothia (NCBI:32207 ) High Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High Distribution    📚 PubMed
genus Rothia (NCBI:508215 ) High Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low Distribution    📚 PubMed
genus Ruminococcus (NCBI:1263 ) Low Distribution    📚 PubMed
genus Ruthenibacterium (NCBI:1905344 ) High Distribution    📚 PubMed
genus Salmonella (NCBI:590 ) High Distribution    📚 PubMed
genus Scardovia (NCBI:196081 ) High Distribution    📚 PubMed
genus Siccibacter (NCBI:1649298 ) High Distribution    📚 PubMed
genus Sporobacter (NCBI:44748 ) Low Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Streptococcus (NCBI:1301 ) High Distribution    📚 PubMed
genus Subdoligranulum (NCBI:292632 ) Low Distribution    📚 PubMed
genus Sutterella (NCBI:40544 ) Low Distribution    📚 PubMed
genus Sutterella (NCBI:40544 ) Low Distribution    📚 PubMed
genus Terrisporobacter (NCBI:1505652 ) High Distribution    📚 PubMed
genus Turicibacter (NCBI:191303 ) High Distribution    📚 PubMed
genus Turicibacter (NCBI:191303 ) High Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High Distribution    📚 PubMed
genus Veillonella (NCBI:29465 ) High Distribution    📚 PubMed
genus Victivallis (NCBI:172900 ) High Distribution    📚 PubMed
genus Weissella (NCBI:46255 ) Low Distribution    📚 PubMed
norank unclassified sequences (NCBI:12908 ) Low Distribution    📚 PubMed
order Bacillales (NCBI:1385 ) High Distribution    📚 PubMed
order Bacteroidales (NCBI:171549 ) Low Distribution    📚 PubMed
order Bifidobacteriales (NCBI:85004 ) High Distribution    📚 PubMed
order Coriobacteriales (NCBI:84999 ) High Distribution    📚 PubMed
order Corynebacteriales (NCBI:85007 ) Low Distribution    📚 PubMed
order Enterobacterales (NCBI:91347 ) High Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) High Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) High Distribution    📚 PubMed
order Eubacteriales (NCBI:186802 ) Low Distribution    📚 PubMed
order Lactobacillales (NCBI:186826 ) High Distribution    📚 PubMed
order Micrococcales (NCBI:85006 ) High Distribution    📚 PubMed
order Tissierellales (NCBI:1737405 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Actinobacteria (NCBI:201174 ) High Distribution    📚 PubMed
phylum Bacteroidetes (NCBI:976 ) High Distribution    📚 PubMed
phylum Bacteroidetes (NCBI:976 ) Low Distribution    📚 PubMed
phylum Candidatus Saccharibacteria (NCBI:95818 ) High Distribution    📚 PubMed
phylum Cyanobacteria (NCBI:1117 ) High Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    📚 PubMed
phylum Firmicutes (NCBI:1239 ) Low Distribution    📚 PubMed
phylum Fusobacteria (NCBI:32066 ) High Distribution    📚 PubMed
phylum Lentisphaerae (NCBI:256845 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Proteobacteria (NCBI:1224 ) High Distribution    📚 PubMed
phylum Synergistetes (NCBI:508458 ) Low Distribution    📚 PubMed
phylum Verrucomicrobia (NCBI:74201 ) High Distribution    📚 PubMed
species [Clostridium] innocuum (NCBI:1522 ) High Distribution    📚 PubMed
species [Clostridium] innocuum (NCBI:1522 ) High Distribution    📚 PubMed
species Actinomyces naeslundii (NCBI:1655 ) High Distribution    📚 PubMed
species Anaerobutyricum hallii (NCBI:39488 ) High Distribution    📚 PubMed
species Anaerobutyricum hallii (NCBI:39488 ) Low Distribution    📚 PubMed
species Aspergillus flavus (NCBI:5059 ) High Distribution    📚 PubMed
species Aspergillus flavus (NCBI:5059 ) High Distribution    📚 PubMed
species Bacteroides thetaiotaomicron (NCBI:818 ) Low Distribution    📚 PubMed
species Bacteroides thetaiotaomicron (NCBI:818 ) Low Distribution    📚 PubMed
species Bifidobacterium pseudocatenulatum (NCBI:28026 ) Low Distribution    📚 PubMed
species Coprococcus comes (NCBI:410072 ) High Distribution    📚 PubMed
species Enterocloster bolteae (NCBI:208479 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Erysipelatoclostridium ramosum (NCBI:1547 ) High Distribution    📚 PubMed
species Eubacterium coprostanoligenes (NCBI:290054 ) Low Distribution    📚 PubMed
species Eubacterium ventriosum (NCBI:39496 ) Low Distribution    📚 PubMed
species Faecalibacterium prausnitzii (NCBI:853 ) Low Distribution    📚 PubMed
species Hungatella hathewayi (NCBI:154046 ) High Distribution    📚 PubMed
species Hungatella hathewayi (NCBI:154046 ) High Distribution    📚 PubMed
species Lachnospira eligens (NCBI:39485 ) Low Distribution    📚 PubMed
species Phocaeicola dorei (NCBI:357276 ) Low Distribution    📚 PubMed
species Phocaeicola dorei (NCBI:357276 ) Low Distribution    📚 PubMed
species Phocaeicola massiliensis (NCBI:204516 ) Low Distribution    📚 PubMed
species Phocaeicola massiliensis (NCBI:204516 ) Low Distribution    📚 PubMed
species Phocaeicola vulgatus (NCBI:821 ) High Distribution    📚 PubMed
species Ruminococcus gnavus (NCBI:33038 ) High Distribution    📚 PubMed

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