National Library of Medicine Citations for Long COVID

The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.

Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some shifts are in opposite directions.

See this post about overlapping bacteria/taxa and possible progression of conditions.

AI Engines For more Details: PerplexityKagi LabsYou

Note these are associations and not causation. Items being high or low may be part of the immune response.

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⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low.

Pseudomonadota ⬆️ ⬆️
Gammaproteobacteria ⬆️
Legionellaceae ⬆️
Legionella ⬆️
Legionella shakespearei ⬆️
Xanthomonadales ⬆️
Rhodanobacteraceae ⬆️
Luteibacter ⬆️
Luteibacter anthropi ⬆️
Dokdonella ⬆️
Dokdonella fugitiva ⬆️
Xanthomonadaceae ⬆️
Marinospirillum ⬆️
Alteromonadales ⬆️
Shewanellaceae ⬆️
Shewanella ⬆️
Pasteurellaceae ⬆️
Pasteurellaceae incertae sedis ⬆️
[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex ⬆️
[Actinobacillus] rossii ⬆️
Actinobacillus ⬆️
Actinobacillus porcinus ⬆️
Haemophilus ⬆️
Haemophilus parahaemolyticus ⬆️
Mannheimia ⬆️
Thiotrichales ⬆️
Thiotrichaceae ⬆️
Thiothrix ⬆️
Enterobacterales ⬆️
Morganella ⬆️
Proteus ⬆️
Enterobacteriaceae ⬆️ ⬆️
Siccibacter ⬆️
Raoultella ⬆️
Klebsiella ⬇️
Cronobacter ⬆️
Citrobacter ⬆️ ⬇️
Escherichia ⬆️ ⬆️
Kluyvera ⬇️
Salmonella ⬆️
Hydrogenophilia ⬆️
Hydrogenophilales ⬆️
Hydrogenophilaceae ⬆️
Hydrogenophilus ⬆️
Rhodospirillaceae ⬇️
Rhodospirillum ⬆️
Novispirillum ⬆️
Insolitispirillum ⬆️
Insolitispirillum peregrinum ⬆️
Acetobacteraceae ⬆️
Rhodobacterales ⬇️
Neomegalonema ⬇️
Caulobacterales ⬆️
Caulobacteraceae ⬆️
Asticcacaulis ⬆️
Methylobacteriaceae ⬇️
Rickettsiaceae ⬆️
Rickettsieae ⬆️
Rickettsia ⬆️
Neisseriaceae ⬆️
Neisseria ⬆️
Rhodocyclales ⬆️
Rhodocyclaceae ⬆️
Sterolibacteriaceae ⬆️
Methylobacillus glycogenes ⬆️
Candidatus Glomeribacter ⬆️
Burkholderia ⬆️
Polynucleobacter ⬆️
Thiomonas thermosulfata ⬆️
Leptothrix ⬆️
Leptothrix discophora ⬆️
Alcaligenaceae ⬆️
Comamonadaceae ⬇️
Hydrogenophaga ⬇️
Sutterellaceae ⬆️
Sutterella ⬇️ ⬇️
Parasutterella ⬆️
Lentisphaerota ⬆️
Victivallaceae ⬆️
Victivallis ⬆️
Verrucomicrobiota ⬆️
Akkermansia ⬆️
Rubritaleaceae ⬆️
Rubritalea ⬆️
Verrucomicrobiaceae ⬆️ ⬆️
Luteolibacter ⬆️
Luteolibacter algae ⬆️
Pelagicoccus ⬆️
Cerasicoccus arenae ⬆️
Chlorobiota ⬆️
Chlorobiia ⬆️
Chlorobiales ⬆️
Chlorobiaceae ⬆️
Chlorobaculum ⬆️
Rhodothermota ⬆️
Rhodothermia ⬆️
Rhodothermales ⬆️
Salisaetaceae ⬆️
Salisaeta ⬆️
Salisaeta longa ⬆️
Rhodothermaceae ⬆️
Rhodothermus ⬆️
Rhodothermus clarus ⬆️
Bacteroidota ⬆️ ⬇️
unclassified Bacteroidetes Order II. ⬆️
Flavobacteriia ⬆️
Flavobacteriales ⬆️
Flavobacteriaceae ⬆️
Gillisia ⬆️
Gillisia limnaea ⬆️
Sphingobacteriia ⬆️
Sphingobacteriales ⬆️
Sphingobacteriaceae ⬆️
Sphingobacterium ⬆️
Sphingobacterium shayense ⬆️
Sphingobacterium bambusae ⬆️
Parapedobacter ⬆️
Parapedobacter koreensis ⬆️
Pedobacter ⬆️
Pedobacter kwangyangensis ⬆️
Niabella ⬇️
Niabella aurantiaca ⬇️
Bacteroidia ⬆️ ⬇️
Bacteroidales ⬇️
Rikenellaceae ⬇️ ⬇️
Alistipes ⬇️ ⬇️
Porphyromonadaceae ⬆️
Porphyromonas canis ⬆️
Prevotellaceae ⬇️ ⬇️ ⬇️
Paraprevotella ⬆️ ⬇️
Prevotella ⬇️ ⬇️
Prevotella dentasini ⬆️
Prevotella aurantiaca ⬆️
Odoribacter ⬆️ ⬇️
Odoribacter denticanis ⬆️
Odoribacter laneus ⬆️
Butyricimonas ⬇️ ⬇️
Muribaculaceae ⬇️
Barnesiellaceae ⬇️ ⬇️
Coprobacter ⬆️
Barnesiella ⬇️ ⬇️ ⬇️
Dysgonomonadaceae ⬆️
Dysgonomonas ⬆️ ⬆️
Dysgonomonas wimpennyi ⬆️
Tannerellaceae ⬇️
Parabacteroides ⬆️ ⬇️
Parabacteroides goldsteinii ⬆️
Bacteroidaceae ⬆️ ⬇️
Bacteroides ⬆️ ⬇️
Bacteroides cellulosilyticus ⬆️
Bacteroides caccae ⬆️
Bacteroides oleiciplenus ⬆️
Bacteroides thetaiotaomicron ⬆️ ⬇️ ⬇️
Phocaeicola massiliensis ⬇️ ⬇️
Phocaeicola dorei ⬇️ ⬇️
Phocaeicola coprophilus ⬇️
Phocaeicola vulgatus ⬆️ ⬆️
Marinifilaceae ⬇️
Cytophagia ⬆️
Cytophagales ⬆️
Amoebophilaceae ⬆️
Candidatus Amoebophilus ⬆️
Candidatus Amoebophilus asiaticus ⬆️
Hymenobacteraceae ⬆️
Pontibacter ⬆️
Pontibacter niistensis ⬆️
Hymenobacter xinjiangensis ⬆️
Flammeovirga ⬆️
Flammeovirga pacifica ⬆️
Spirosomataceae ⬆️
Runella ⬆️
Runella limosa ⬆️
Dyadobacter ⬆️
Emticicia ⬆️
Emticicia oligotrophica ⬆️
Cytophagaceae ⬆️
Bacillota ⬇️ ⬇️
Tissierellales ⬆️
Peptoniphilaceae ⬆️
Peptoniphilus ⬆️
Peptoniphilus asaccharolyticus ⬆️
Peptoniphilus coxii ⬆️
Anaerococcus hydrogenalis ⬆️
Tissierellia incertae sedis ⬆️
Sedimentibacter ⬆️
Clostridia ⬇️
Eubacteriales ⬆️ ⬆️ ⬇️
Proteinivoraceae ⬆️
Anaerobranca ⬆️
Anaerobranca zavarzinii ⬆️
Lachnospiraceae ⬆️ ⬇️ ⬇️ ⬇️
Lachnoanaerobaculum ⬆️
Lachnobacterium ⬆️
Fusicatenibacter ⬆️ ⬇️ ⬇️ ⬇️ ⬇️
Eisenbergiella ⬆️
Lachnoclostridium ⬇️
Agathobacter ⬆️ ⬆️ ⬇️
Dorea ⬇️ ⬇️
Anaerostipes ⬇️ ⬇️
[Ruminococcus] gnavus ⬆️
Anaerobutyricum hallii ⬆️ ⬇️ ⬇️
Oribacterium ⬆️
Oribacterium sinus ⬆️
Enterocloster bolteae ⬆️ ⬆️
Lachnospira ⬆️ ⬇️
Lachnospira eligens ⬇️
Coprococcus ⬇️ ⬇️ ⬇️
Coprococcus comes ⬆️
Pseudobutyrivibrio ⬇️
Blautia ⬆️ ⬇️
Blautia obeum ⬇️
Robinsoniella ⬆️
Butyrivibrio ⬇️
Roseburia ⬇️ ⬇️ ⬇️
Peptostreptococcaceae ⬆️ ⬇️
Peptostreptococcus ⬆️
Romboutsia ⬆️ ⬇️ ⬇️
Terrisporobacter ⬆️
Intestinibacter ⬆️ ⬆️ ⬆️ ⬇️
Filifactor villosus ⬆️
Eubacteriaceae ⬆️ ⬇️
Eubacterium ⬆️ ⬆️ ⬇️ ⬇️
Eubacterium coprostanoligenes ⬇️
Eubacterium ventriosum ⬇️
Anaerofustis ⬇️
Anaerofustis stercorihominis ⬇️
Peptococcaceae ⬇️
Peptococcus ⬇️
Oscillospiraceae ⬇️ ⬇️ ⬇️
Pseudoflavonifractor ⬆️
Oscillospira ⬆️
Oscillospira guilliermondii ⬆️
Ruminococcus ⬇️ ⬇️ ⬇️ ⬇️
Ruminococcus flavefaciens ⬇️
Ruminococcus bromii ⬇️ ⬇️
Ruminiclostridium cellulolyticum ⬆️
Ruminiclostridium cellobioparum ⬆️
Ruminiclostridium cellobioparum subsp. termitidis ⬆️
Ruthenibacterium ⬆️
Monoglobus ⬇️
Faecalibacterium ⬆️ ⬆️ ⬇️ ⬇️ ⬇️ ⬇️
Faecalibacterium prausnitzii ⬇️ ⬇️
Anaerotruncus ⬆️
Anaerotruncus colihominis ⬆️
Acetanaerobacterium ⬆️
Subdoligranulum ⬇️
Sporobacter ⬇️
Oscillibacter ⬇️ ⬇️
Anaerofilum ⬆️
Flavonifractor ⬆️ ⬆️ ⬆️ ⬆️
Flavonifractor plautii ⬆️
Desulfosporosinus ⬆️
Pelotomaculum isophthalicicum ⬆️
Desulfurispora ⬆️
Desulfurispora thermophila ⬆️
Clostridiaceae ⬆️ ⬆️
Alkaliphilus ⬆️
Alkaliphilus crotonatoxidans ⬆️
Clostridium frigoris ⬆️
Clostridium nitrophenolicum ⬆️
Clostridium taeniosporum ⬆️
Clostridium tepidiprofundi ⬆️
Clostridium vincentii ⬆️
Hungatella hathewayi ⬆️ ⬆️
Hathewaya ⬆️
Hathewaya histolytica ⬆️
Lactonifactor ⬇️
Caloramator ⬆️
Caloramator mitchellensis ⬆️
Butyricicoccus ⬇️ ⬇️ ⬇️
Tindallia ⬆️
Tindallia magadiensis ⬆️
Heliobacteriaceae ⬆️
Heliorestis ⬆️
Intestinimonas ⬇️ ⬇️
Colidextribacter ⬇️
Gemmiger ⬆️
Gemmiger formicilis ⬇️
Howardella ⬇️
Mogibacterium ⬇️
Clostridiales Family XVI. Incertae Sedis ⬆️
Carboxydocella ⬆️
Carboxydocella ferrireducens ⬆️
Symbiobacterium ⬆️
Syntrophomonadaceae ⬆️
Christensenellaceae ⬆️ ⬇️
Christensenella ⬇️
Thermosediminibacterales ⬆️
Tepidanaerobacteraceae ⬆️
Tepidanaerobacter ⬆️
Tepidanaerobacter syntrophicus ⬆️
Moorella ⬆️
Natranaerobiales ⬆️
Halanaerobium ⬆️
Thermoanaerobacteraceae ⬆️
Thermoanaerobacterium ⬆️
Thermoanaerobacterium islandicum ⬆️
Ammonifex ⬆️
Ammonifex thiophilus ⬆️
Thermoanaerobacterales Family III. Incertae Sedis ⬆️
Candidatus Contubernalis ⬆️
Candidatus Contubernalis alkalaceticus ⬆️
Erysipelotrichaceae ⬆️ ⬇️ ⬇️ ⬇️
Faecalicoccus ⬆️
Holdemania ⬆️
Coprobacillus ⬆️ ⬆️ ⬆️
Catenibacterium ⬆️
[Clostridium] innocuum ⬆️ ⬆️ ⬆️
Thomasclavelia ramosa ⬆️ ⬆️ ⬆️ ⬆️
Turicibacter ⬆️ ⬆️
Negativicutes ⬇️
Acidaminococcaceae ⬇️
Phascolarctobacterium ⬇️
Acidaminococcus ⬇️
Veillonellaceae ⬆️ ⬇️
Allisonella ⬇️
Veillonella ⬆️ ⬆️ ⬆️
Veillonella criceti ⬆️
Veillonella montpellierensis ⬆️
Veillonella parvula ⬆️
Dialister ⬇️
Dialister invisus ⬆️
Dialister micraerophilus ⬆️
Megasphaera ⬇️
Negativicoccus succinicivorans ⬆️
Selenomonadaceae ⬆️
Megamonas ⬆️
Mitsuokella ⬆️ ⬇️
Anaerovibrio ⬆️
Anaerovibrio lipolyticus ⬆️
Propionispira ⬆️
Pectinatus ⬆️
Pectinatus cerevisiiphilus ⬆️
Bacilli ⬆️
Bacillales ⬆️
Geobacillus ⬆️
Lentibacillus salinarum ⬆️
Sporosarcina ⬇️
Viridibacillus neidei ⬆️
Sporolactobacillaceae ⬆️
Sporolactobacillus ⬆️
Sporolactobacillus putidus ⬆️
Bacillales incertae sedis ⬆️
Thermicanus ⬆️
Gemellaceae ⬆️
Gemella ⬆️ ⬆️
Gemella cuniculi ⬆️
Lactobacillales ⬆️
Streptococcaceae ⬆️ ⬆️
Streptococcus ⬆️ ⬆️
Streptococcus oralis subsp. tigurinus ⬆️
Streptococcus pseudopneumoniae ⬆️
Streptococcus infantis ⬆️
Lactococcus ⬆️
Carnobacteriaceae ⬆️
Granulicatella ⬆️
Lactobacillaceae ⬆️
Pediococcus ⬆️
Lactobacillus ⬆️ ⬇️ ⬇️
Lactobacillus crispatus ⬆️
Furfurilactobacillus ⬆️
Furfurilactobacillus siliginis ⬆️
Ligilactobacillus ruminis ⬆️
Weissella ⬇️
Enterococcaceae ⬆️ ⬆️
Enterococcus ⬆️ ⬆️
Tetragenococcus ⬆️
Tetragenococcus halophilus ⬆️
Deinococcota ⬆️
Deinococci ⬆️
Deinococcales ⬆️
Deinococcaceae ⬆️
Deinococcus ⬆️
Cyanobacteriota ⬆️
Nostocaceae ⬆️
Nostoc ⬆️
Rivulariaceae ⬆️
Nodularia ⬆️
Nodularia baltica ⬆️
Calotrichaceae ⬆️
Calothrix ⬆️
Calothrix parietina ⬆️
Oscillatoriophycideae ⬆️
Chroococcales ⬆️
Chroococcaceae ⬆️
Chroococcus ⬆️
Chroococcus minutus ⬆️
Geminocystaceae ⬆️
Cyanobacterium ⬆️
Cyanobacterium aponinum ⬆️
Microcoleus ⬆️
Microcoleus antarcticus ⬆️
Oscillatoriaceae ⬆️
Oscillatoria ⬆️
Oscillatoria corallinae ⬆️
Pseudanabaenaceae ⬆️
Leptolyngbyaceae ⬆️
Leptolyngbya ⬆️
Leptolyngbya laminosa ⬆️
unclassified Terrabacteria group ⬆️
Chloroflexota incertae sedis ⬆️
Thermobaculum ⬆️
Thermobaculum terrenum ⬆️
Actinomycetota ⬆️ ⬆️
Actinomycetes ⬆️
Actinomycetaceae ⬆️
Actinomyces ⬆️
Actinomyces naeslundii ⬆️
Schaalia turicensis ⬆️
Bifidobacteriales ⬆️
Bifidobacteriaceae ⬆️ ⬆️
Bifidobacterium ⬆️ ⬆️ ⬇️ ⬇️ ⬇️
Bifidobacterium scardovii ⬆️
Bifidobacterium adolescentis ⬆️ ⬇️
Bifidobacterium dentium ⬆️ ⬆️
Bifidobacterium longum ⬇️
Bifidobacterium pseudocatenulatum ⬇️
Bifidobacterium choerinum ⬆️
Scardovia ⬆️
Parascardovia ⬆️
Micrococcales ⬆️
Micrococcaceae ⬆️ ⬆️
Rothia ⬆️ ⬆️ ⬆️
Microbacteriaceae ⬇️
Mycobacteriales ⬇️
Corynebacteriaceae ⬇️
Corynebacterium ⬆️ ⬇️
Propionibacteriales ⬇️
Streptosporangiaceae ⬆️
Acidimicrobiia ⬆️
Candidatus Microthrix ⬆️ ⬆️
Coriobacteriia ⬆️ ⬇️
Eggerthellaceae ⬆️
Adlercreutzia ⬆️ ⬇️
Asaccharobacter ⬆️
Eggerthella ⬆️
Coriobacteriales ⬆️
Atopobium ⬆️
Atopobium fossor ⬆️
Coriobacteriaceae ⬆️ ⬆️ ⬇️
Collinsella ⬆️ ⬇️ ⬇️
Collinsella aerofaciens ⬇️
Nitriliruptoria ⬆️
Euzebyales ⬆️
Euzebyaceae ⬆️
Euzebya ⬆️
Euzebya tangerina ⬆️
Mycoplasmopsis ⬆️
Entomoplasmatales ⬆️
Entomoplasmataceae ⬆️
Mesoplasma ⬆️
Mesoplasma entomophilum ⬆️
Candidatus Phytoplasma ⬆️
16SrX (Apple proliferation group) ⬆️
Candidatus Phytoplasma prunorum ⬆️
Calditrichota ⬆️
Calditrichia ⬆️
Calditrichales ⬆️
Calditrichaceae ⬆️
Caldithrix ⬆️
Chrysiogenota ⬆️
Chrysiogenetes ⬆️
Chrysiogenales ⬆️
Chrysiogenaceae ⬆️
Desulfurispirillum ⬆️
Desulfurispirillum alkaliphilum ⬆️
Desulfovibrionaceae ⬇️
Fundidesulfovibrio butyratiphilus ⬆️
Bilophila ⬆️ ⬇️ ⬇️
Bilophila wadsworthia ⬆️
Desulfovibrio ⬇️
Desulfuromonadales ⬆️
Desulfuromonadaceae ⬆️
Desulfuromusa ⬆️
Treponemataceae ⬆️
Treponema ⬆️
Candidatus Saccharibacteria ⬆️
Nannocystineae ⬆️
Helicobacter suncus ⬆️
Campylobacteraceae ⬆️
Campylobacter ⬆️
Fusobacteriota ⬆️
Fusobacteriia ⬆️
Fusobacteriaceae ⬆️
Cetobacterium ⬇️
Fusobacterium ⬆️ ⬇️
Synergistota ⬇️
Pyramidobacter ⬇️
Synergistaceae ⬇️
Cloacibacillus ⬇️
Viridiplantae ⬆️
rosids ⬆️
fabids ⬆️
Fabales ⬆️
Fabaceae ⬆️
Papilionoideae ⬆️
50 kb inversion clade ⬆️
genistoids sensu lato ⬆️
core genistoids ⬆️
Crotalarieae ⬆️
Rothia ⬆️ ⬆️ ⬆️ ⬆️
Opisthokonta ⬆️
Metazoa ⬆️
Eumetazoa ⬆️
Bilateria ⬆️
Protostomia ⬆️
Spiralia ⬆️
Lophotrochozoa ⬆️
Mollusca ⬆️
Bivalvia ⬆️
Palaeoheterodonta ⬆️
Unionida ⬆️
Unionoidea ⬆️
Unionidae ⬆️
Unioninae ⬆️
Nodularia ⬆️
Proteus ⬆️
Aspergillus flavus ⬆️ ⬆️
unclassified sequences ⬇️

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