Details about Actinomycetota: NCBI 201174, high G+C gram-positive
Probiotic Effects:
- Some Actinobacteria, such as Bifidobacterium species, are commonly used as probiotics. These bacteria are known for their beneficial effects on gut health. They contribute to the fermentation of dietary fibers, produce short-chain fatty acids (SCFAs), and help maintain a balanced and healthy gut microbiota.
Short-Chain Fatty Acid Production:
- Actinobacteria, particularly certain species in the human gut, contribute to the production of SCFAs, including acetate, propionate, and butyrate. SCFAs play a role in supporting gut health, providing energy for colonocytes, and influencing the immune system.
Immunomodulation:
- Some Actinobacteria may modulate the immune system. For example, Bifidobacterium species have been associated with anti-inflammatory effects and immune system regulation. This immunomodulatory activity is important for maintaining a balanced immune response in the gut.
Metabolism of Complex Carbohydrates:
- Actinobacteria in the gut are involved in the metabolism of complex carbohydrates, contributing to the breakdown of dietary fibers and the production of beneficial metabolites.
Vitamin Synthesis:
- Certain Actinobacteria are involved in the synthesis of vitamins, such as B vitamins (e.g., B12 and folate). These vitamins are essential for various physiological processes in the body.
Antimicrobial Activity:
- Some Actinobacteria produce secondary metabolites with antimicrobial properties. These compounds may help protect against the growth of harmful bacteria and contribute to the overall balance of the microbial community.
Soil Bacteria and Human Health:
- Actinobacteria are abundant in soil, and exposure to these bacteria in the environment may have indirect health effects. Some Actinobacteria-derived compounds are used in the production of antibiotics and other pharmaceuticals.
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Other Sources for more information:
- Immune Epitope Database
- The NCBI taxonomy database
- UniProt
- Immune Epitope Taxonomy Database (IEDB)
- AI Engines For more Details: Perplexity Kagi Labs You
- Food Suggestions to Increaase Food Suggestions to Decreaase
 Statistics
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4917 Interactions with Other Bacteria | NCBI | Data Punk | End Products Produced |
Lab Reporting
Different labs use different software to read the sample. See this post for more details.
One lab may say you have none, another may say you have a lot! - This may be solely due to the software they are using to estimate.
We deem lab specific values using values from the KM method for each specific lab to be the most reliable.
Desired Levels Suggestions for Actinomycetota
Using Kaltoft-Moldrup Heuristic Using uploaded data for Actinomycetota
Lab Low and High are calculated using the formula that most labs use: Mean - 2 Standard Deviation to Mean + 2 Standard Deviation
| Lab | KM Low | KM Percentile Low | KM High | KM Percentile High | Lab Low | Lab High | Mean | Standard Deviation |
|---|---|---|---|---|---|---|---|---|
| All | 0.037 | 6.4 %ile | 23.099 | 98.1 %ile | 0 | 16.468 | 3.098 | 6.822 |
| BiomeSight | 0.026 | 4.8 %ile | 10.187 | 97.8 %ile | 0 | 9.703 | 1.482 | 4.194 |
| Ombre/Thryve | 0.021 | 3.2 %ile | 88.859 | 100 %ile | 0 | 21.526 | 3.81 | 9.039 |
| uBiome | 0.959 | 7.4 %ile | 67.903 | 100 %ile | 0 | 20.71 | 6.526 | 7.237 |
Lab Suggestions for Actinomycetota
| Low Boundary | High Boundary | Low Boundary %age | High Boundary %age | Lab Samples |
|---|---|---|---|---|
| 11000 | 50000 | 1.1 | 5 | Medivere |
| 1000 | 12600 | 0.1 | 1.26 | Nirvana/CosmosId |
| 0 | 30000 | 0 | 3 | XenoGene |
Statistic by Lab Source for Actinomycetota
| Lab | Frequency Seen | Average | Standard Deviation | Sample Count | Lab Samples |
|---|---|---|---|---|---|
| CosmosId | 100 % | 4.551 % | 6.784 % | 38.0 | 38 |
| AmericanGut | 100 % | 2.638 % | 5.994 % | 18.0 | 18 |
| bugspeak | 100 % | 1.037 % | % | 1.0 | 1 |
| BiomeSightRdp | 100 % | 0.314 % | 0.944 % | 45.0 | 45 |
| Microba1 | 100 % | 0.06 % | % | 1.0 | 1 |
| GanzimmunDiag | 100 % | 2.058 % | 0 % | 3.0 | 3 |
| Microba | 93.333 % | 5.772 % | 17.297 % | 28.0 | 30 |
| BiomeSight | 99.775 % | 1.43 % | 3.986 % | 2656.0 | 2662 |
| custom | 89.552 % | 2.303 % | 3.011 % | 60.0 | 67 |
| Medivere | 100 % | 1.691 % | 2.061 % | 7.0 | 7 |
| es-xenogene | 100 % | 1.924 % | 8.874 % | 35.0 | 35 |
| SequentiaBiotech | 100 % | 5.682 % | 6.962 % | 36.0 | 36 |
| Thorne | 100 % | 7.131 % | 8.892 % | 55.0 | 55 |
| Tiny | 100 % | 9.009 % | % | 1.0 | 1 |
| uBiome | 99.622 % | 6.522 % | 7.233 % | 790.0 | 793 |
| CerbaLab | 100 % | 6.893 % | 6.334 % | 3.0 | 3 |
| Thryve | 100 % | 3.467 % | 8.209 % | 1571.0 | 1571 |
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