Bacteria reported by various 16s providers

Typical cost is $60-$160 depending on providers and specials. Please note that a provider may report on a rare bacteria but it has not been seen in uploads yet.

Critical Reading to understand the differences The Taxonomy Nightmare

Bacteria Reported on not 16s Tests

Rank Bacteria BiomeSight
1843 Samples
Thryve
1362 Samples
uBiome
797 Samples
CosmosId
41 Samples
es-xenogene
36 Samples
SequentiaBiotech
36 Samples
custom
26 Samples
BiomeSightRdp
26 Samples
Microba
22 Samples
AmericanGut
18 Samples
Medivere
7 Samples
Thorne
4 Samples
biotype Haemophilus influenzae aegyptius 1
biotype Mycobacterium tuberculosis variant caprae 1
biotype Mycobacterium tuberculosis variant pinnipedii 187
clade 5 1
clade 2 10
clade 50 kb inversion clade 469 11 1 2 1 3
clade Alveolata 2
clade Amniota 1 5
clade ant endosymbionts 429 4 6
clade ant, tsetse, mealybug, aphid, etc. endosymbionts 441 1 4 6
clade aphid secondary symbionts 20 1
clade Archelosauria 2
clade Archosauria 2
clade asterids 18 10
clade Bacteria candidate phyla 200 5 3 1 4
clade Bacteroidetes/Chlorobi group 1838 1341 789 35 27 36 26 21 21 18 7 4
clade Bilateria 429 8 11 4 1 1 11 1
clade Boreoeutheria 1 4
clade Caldiserica/Cryosericota group 1 10 1
clade campanulids 10
clade Candidatus Baumannia 1
clade Candidatus Dependentiae 3
clade Candidatus Uzinura 1
clade Coelurosauria 2
clade core chlorophytes 1
clade core genistoids 470 11 1 2 1 3
clade Cyanobacteria/Melainabacteria group 1730 934 31 4 18 6 10 7 7 4
clade Deuterostomia 5 1 1 10
clade Dicondylia 260 7 11 4 1 11 1
clade Dinosauria 2
clade Dipnotetrapodomorpha 5 1 1 10
clade Ditrysia 8
clade dothideomyceta 1
clade Ecdysozoa 260 7 11 4 1 11 1
clade Embryophyta 472 11 18 1 2 10 3
clade eudicotyledons 472 11 18 1 2 10 3
clade Eumetazoa 456 8 11 4 1 1 11 1
clade Euphyllophyta 472 11 18 1 2 10 3
clade Euteleostomi 5 1 1 10
clade Eutheria 1 4
clade fabids 469 11 1 2 1 3
clade FCB group 1838 1341 789 35 27 36 26 21 22 18 7 4
clade genistoids sensu lato 469 11 1 2 1 3
clade Gnathostomata 5 1 1 10
clade Gunneridae 472 11 18 1 2 10 3
clade Heliantheae alliance 10
clade lamiids 18
clade leotiomyceta 4 1
clade lice endosymbionts 1
clade Lophotrochozoa 318 1 1 1
clade Luna-1 subcluster 2 3 1 3 3
clade Mandibulata 260 7 11 4 1 11 1
clade mealybug secondary endosymbionts 1
clade Mesangiospermae 472 11 18 1 2 10 3
clade Metamonada 1
clade Methanomada group 474 279 220 5 20 16 12 9 2 11 7
clade Nitrospinae/Tectomicrobia group 5 5
clade Obtectomera 8
clade OM182 clade 1
clade OMG group 1
clade Opisthokonta 456 8 11 12 1 7 10 13 6 3
clade Panarthropoda 260 7 11 4 1 11 1
clade Pancrustacea 260 7 11 4 1 11 1
clade Patescibacteria group 1
clade Pentapetalae 472 11 18 1 2 10 3
clade Protostomia 424 8 11 4 1 11 1
clade PVC group 1682 1189 568 18 27 29 15 12 10 14 5 4
clade Rhizaria 2 2
clade rosids 469 11 1 2 1 3
clade saccharomyceta 8 7 6 3
clade Sar 2 4 2
clade SAR116 cluster 1
clade Sauria 2
clade Saurischia 2
clade Sauropsida 2
clade sordariomyceta 4
clade Spermatophyta 472 11 18 1 2 10 3
clade Spiralia 318 1 1 1
clade Stenosarchaea group 20 8 10 17 6 2
clade Stramenopiles 2
clade sulfur-oxidizing symbionts 1 1
clade TACK group 29 7 1
clade Teleostomi 5 1 1 10
clade Terrabacteria group 1838 1341 791 35 28 36 26 21 22 18 7 4
clade Tetrapoda 5 1 1 10
clade Theria 1 4
clade Theropoda 2
clade Tracheophyta 472 11 18 1 2 10 3
clade Vertebrata 5 1 1 10
class 5 1
class 1
class 1
class Acidimicrobiia 235 497 2 1 3 3 4
class Acidithiobacillia 42 1 1 4
class Acidobacteriia 305 891 111 4 2 2 2 4
class Aconoidasida 2
class Actinomycetia 1829 1343 784 35 28 35 18 21 19 17 7 4
class Agaricomycetes 1
class algae 2 2
class Alphaproteobacteria 1788 1327 438 4 20 32 11 21 15 7 7 4
class Amphibia 5 1 5
class Anaerolineae 766 313 9 4 1 5 7 4
class Anthozoa 36 1
class Aquificae 11 101 4 3 4 4
class Archaeoglobi 1 1 2 2
class Ardenticatenia 21 1 3 4
class Armatimonadia 1 1
class Aves 2
class Bacilli 1842 1400 787 34 28 36 23 21 21 18 7 4
class Bacteroidia 1842 1400 789 35 28 36 26 21 21 18 7 4
class Balneolia 68 726 7 2 3
class Betaproteobacteria 1834 1388 746 33 22 36 18 21 17 18 7 4
class Bivalvia 241 1
class Blastocatellia 170 1 3 1
class Caldilineae 590 453 3 2 5 7 3
class Caldisericia 1 10 1
class Calditrichia 346 15 1 1 7
class Candidatus Babeliae 3
class Candidatus Brocadiia 12 1
class Chitinispirillia 19 2
class Chitinivibrionia 2
class Chitinophagia 835 1091 5 5 4 1 14 1 6 4
class Chlamydiia 166 136 1 1 1 1 4
class Chlorobia 1506 97 1 4 1 11 2 4
class Chloroflexia 4 70 2 1 14 1 4
class Chlorophyceae 1
class Chrysiogenetes 305 19 1 1 1 1
class Chthonomonadetes 6 166 3
class Clostridia 1842 1400 791 35 28 36 26 21 21 18 7 4
class Conoidasida 3
class Coprothermobacteria 15 83 7
class Coriobacteriia 1824 1394 786 35 28 36 19 21 15 18 7 4
class Cytophagia 1779 1204 7 4 12 4 13 6 4
class Deferribacteres 477 125 1 4 3 3 4 4
class Dehalococcoidia 102 245 1 1 4 1 2 4
class Deinococci 1142 291 7 4 13 1 11 7 4
class Deltaproteobacteria 1817 1349 647 21 28 33 23 21 15 14 7 4
class Dictyoglomia 105 2 1 2
class Dothideomycetes 1
class Elusimicrobia 8 91 7 1 19 15 3 7
class Endomicrobia 1 2
class Epsilonproteobacteria 1017 619 266 3 28 10 10 9 7 7 4
class Erysipelotrichia 1839 1399 785 34 22 36 15 21 14 17 7 4
class Eurotiomycetes 4 1
class Fibrobacteria 139 304 187 1 2 4
class Fimbriimonadia 2 75 1
class Flavobacteriia 1605 715 459 3 4 12 7 13 2 2 7 4
class Florideophyceae 10
class Fusobacteriia 931 767 144 4 28 7 10 6 2 2 6 4
class Gammaproteobacteria 1836 1398 720 33 28 36 18 21 19 18 7 4
class Gastropoda 109 1 1
class Gemmatimonadetes 12 50 1 1 15 1 13 7 4
class Gloeobacteria 12 1 1 1 4
class Halobacteria 10 1 1 2
class Holophagae 900 787 2 6
class Hydrogenophilalia 880 267 6 1 3 1 1
class Ignavibacteria 38 889 2 4 16 2 6 4
class Insecta 260 7 11 4 1 11 1
class Kiritimatiellae 1
class Ktedonobacteria 190 26 1 1 3 4
class Lentisphaeria 344 284 4 1 6 3 6 2 5 4
class Limnochordia 4 1 4
class Magnoliopsida 472 11 18 1 2 10 3
class Malgrandaviricetes 2 10
class Mammalia 1 4
class Methanobacteria 474 283 220 5 21 16 12 9 2 11 7
class Methanococci 1 15 6
class Methanomicrobia 10 7 10 18 6
class Methylacidiphilae 12 1 1
class Mollicutes 1762 1249 167 1 4 25 7 20 1 2 6 4
class Negativicutes 1837 1400 791 35 28 34 21 21 19 17 7 4
class Nitriliruptoria 1093 102 1 3 1 4
class Nitrososphaeria 14 1
class Nitrospinia 5 5
class Nitrospira 397 58 1 4 1 6 4
class Oligoflexia 34 117 1 1 4 1 1 1 4
class Oligosphaeria 50 1
class Opitutae 1077 507 96 1 4 1 2 5 4 4
class Phycisphaerae 2 4 1 4
class Pisoniviricetes 1
class Planctomycetia 24 128 1 4 1 4
class Rhodothermia 160 89 1
class Rhynchonellata 1
class Rubrobacteria 16 137 3 3 2 4
class Saccharomycetes 8 7 6 3
class Saprospiria 84 211 4 4
class Solibacteres 31 1
class Sordariomycetes 4
class Spartobacteria 34 63
class Sphingobacteriia 1839 712 18 4 26 5 19 4 7 4
class Spirochaetia 797 232 16 23 12 6 1 4
class Synergistia 1364 547 236 3 6 1 3 12 2 1 7 4
class Thermoanaerobaculia 86
class Thermococci 4 1 2 3
class Thermodesulfobacteria 174 60 1 1 2 4
class Thermodesulfovibrionia Umezawa et al. 2021 268 7
class Thermoflexia 4
class Thermoleophilia 24 127 1 1
class Thermolithobacteria 69
class Thermomicrobia 30 1 2 4
class Thermoplasmata 43 36 6 2
class Thermoprotei 9
class Thermotogae 65 48 4 1 6 4
class Tissierellia 1820 1348 513 10 28 14 10 16 8 7 4
class Tremellomycetes 1 13
class unclassified Cyanobacteria 1
class Ustilaginomycetes 3
class Verrucomicrobiae 1559 1170 494 17 28 26 14 12 10 13 3 4
class Vicinamibacteria 1 4
class Zetaproteobacteria 40 1 1 1 4
cohort Endopterygota 3 9
cohort Paraneoptera 255 2 11 1 11
cohort Polyneoptera 7 7 1 1
family 1
family 1
family 1
family 1
family 2
family 1
family 'Williamsiaceae' 2 6
family Acanthopleuribacteraceae 60
family Acaryochloridaceae 3
family Acetobacteraceae 603 434 2 1 4 1 1 3 1 3 4
family Acholeplasmataceae 1651 942 19 4 15 2 9 6 4
family Acidaminococcaceae 1694 1290 565 24 27 22 12 17 14 13 7 4
family Acidiferrobacteraceae 17 4 4
family Acidimicrobiaceae 235 482 1 2 3
family Acidithiobacillaceae 42 1 1 4
family Acidobacteriaceae 304 242 87 4 1 2 2 4
family Acidothermaceae 57 1
family Actinomycetaceae 1453 1233 634 30 14 24 8 12 1 8 7 4
family Actinopolymorphaceae 115 2 1
family Actinopolysporaceae 393 249 1 5 3
family Aerococcaceae 762 1152 80 2 4 3 10 1 7 4
family Aeromonadaceae 408 278 7 1 4 4 1 1 3 2 4
family Akkermansiaceae 1568 1213 789 29 28 36 15 10 17 18 4 4
family Alcaligenaceae 1810 227 6 4 10 2 2 1 7 4
family Alcanivoracaceae 236 22 1 1 4
family Algiphilaceae 50
family Alicyclobacillaceae 2 547 4 7 3 6 4
family Alsobacteraceae 2
family Alteromonadaceae 632 552 4 1 1 1 2 4
family Amaranthaceae 4
family Amoebophilaceae 1650 3 1 1 5 2
family Anaerolineaceae 329 312 8 4 1 5 4
family Anaeromyxobacteraceae 1 690 1 1 1 4
family Anaeroplasmataceae 200 517 128 3 1 5 2 2
family anamorphic Herpotrichiellaceae 1
family Anaplasmataceae 497 28 1 4 1 2 2 4
family Aphanizomenonaceae 1221 3 4 4 7
family Aphanothecaceae 1 8 1 1 4
family Aphididae 4 11
family Aquificaceae 11 61 3 2 4
family Archaeoglobaceae 1 2 2
family Archangiaceae 76 97 1 1 4
family Arcobacteraceae Waite et al. 2017 114 21 1 4 1 1 4
family Ardenticatenaceae 21 1 3 4
family Armatimonadaceae 1 1
family Aspergillaceae 4 1
family Asteraceae 10
family Atopobiaceae 671 922 165 4 25 10 4 7 3 4
family Aurantimonadaceae 22 17 1 1 4
family Azonexaceae 159 23 1 1 4
family Azospirillaceae 925 621 1 4 2 1 7 3 2 4
family Babyloniidae 2
family Bacillaceae 1703 1079 232 3 28 31 8 20 12 7 4
family Bacillales Family X. Incertae Sedis 1826 733 3 10 7
family Bacillidae 7 6 1 1
family bacterial virus 1
family Bacteriovoracaceae 8 81 1 1 1 1
family Bacteroidaceae 1842 1400 783 35 28 35 26 21 21 18 7 4
family Balneatrichaceae 29
family Balneicellaceae 14
family Balneolaceae 69 722 1 2 3
family Barnesiellaceae 1130 514 17 28 11 11 9 11 18 4
family Bartonellaceae 59 15 4 1 4
family Bdellovibrionaceae 26 10 1 1 1 1 4
family Beijerinckiaceae 57 15 4 4
family Bernardetiaceae 136 1 2
family Beutenbergiaceae 1 2
family Bifidobacteriaceae 1820 1392 790 33 28 36 18 21 20 18 7 4
family Blastocatellaceae 18 1 1
family Blastochloridaceae 6 1 2
family Blastocystidae 2
family Blattabacteriaceae 4 1 4
family Bogoriellaceae 20 45 4 3
family Borreliaceae 19 2 4 4 3
family Boseaceae 7 1 4 1 4
family Brachyspiraceae 24 13 4 1 4
family Braconidae 2
family Bradymonadaceae 1 4
family Bradyrhizobiaceae 74 59 11 4 1 1 1 1 4
family Breoghaniaceae 1
family Brevibacteriaceae 163 139 60 28 4 1 7 4
family Brevinemataceae 5 1
family Brucellaceae 194 49 25 4 4 1 3 1 4
family Bruguierivoracaceae Li et al. 2021 7 28 4 1 3
family Bryobacteraceae 19 1
family Budviciaceae 308 4 1 1 16 3
family Burkholderiaceae 1633 450 27 4 17 4 19 1 3 7 4
family Caedimonadaceae 1
family Caldicoprobacteraceae 48 236
family Caldilineaceae 591 451 3 2 5 7 3
family Caldisericaceae 10 1
family Caldisphaeraceae 1
family Calditrichaceae 346 15 1 1 7
family Caliciviridae 1
family Calotrichaceae 760 125 4 1 6 4
family Campylobacteraceae 732 517 265 3 28 7 10 6 7 7 4
family Candidatus Babeliaceae 3
family Candidatus Brocadiaceae 12 1
family Candidatus Competibacteraceae 184 2 1
family Candidatus Desulfofervidaceae 1
family Candidatus Methanomethylophilaceae 23
family Candidatus Midichloriaceae 1 1
family Candidatus Nanopelagicaceae 3 1 4
family Candidatus Paracaedibacteraceae 1
family Candidatus Scalinduaceae Lodha et al. 2021 12
family Canidae 5
family Cardiobacteriaceae 39 175 2 1 1 4
family Carnobacteriaceae 1159 831 326 13 4 5 5 14 1 3 7 4
family Catabacteriaceae 230 100 1 1 8 1 6
family Catalimonadaceae 60
family Catenulisporaceae 8 4 2
family Caulobacteraceae 833 190 9 4 1 6 4 1 4
family Celerinatantimonadaceae 6
family Cellulomonadaceae 144 142 4 4 1 4
family Cellvibrionaceae 137 89 4 1 4
family Cenarchaeaceae DeLong and Preston 1996 8
family Cesiribacteraceae 49
family Chamaesiphonaceae 5 3
family Chelatococcaceae 4 8 1
family Chitinispirillaceae 19 2
family Chitinivibrionaceae 2
family Chitinophagaceae 842 1091 5 5 4 1 14 1 6 4
family Chlamydiaceae 1 2 1 1 2
family Chlorobiaceae 1506 97 4 1 11 2 4
family Chloroflexaceae 3 2 1 1
family Chlorogloeopsidaceae 17
family Christensenellaceae 349 181 28 4 24 3 10 1 14 7 4
family Chromatiaceae 1515 693 2 4 1 3 6 6 4
family Chromobacteriaceae 236 125 12 4 1 4
family Chroococcaceae 743 2 1 2
family Chroococcidiopsidaceae 1 1 1 4
family Chrysiogenaceae 309 19 1 1 1 1
family Chthoniobacteraceae 34 12
family Chthonomonadaceae 6 166 3
family Clostridiaceae 1841 1400 788 35 28 36 26 21 18 17 7 4
family Clostridiales Family XI. Incertae Sedis 217
family Clostridiales Family XVI. Incertae Sedis 1038 69 1 4 3 2 4
family Clostridiales Family XVII. Incertae Sedis 65 191 1 4 1 7 2 4
family Coccidae 209 3
family Coelosphaeriaceae 43
family Cohaesibacteraceae 1 1 2
family Coleofasciculaceae 13 5 1
family Colwelliaceae 4 205 4 1 2 4
family Comamonadaceae 1627 255 111 4 3 2 8 9 6 4
family Conexibacteraceae 7 8
family Coprobacillaceae Verbarg et al. 2014 1814 1059 394 30 2 5 6 14 11 7 2
family Coprothermobacteraceae 15 83 7
family Coriobacteriaceae 1828 1237 782 26 28 34 9 18 18 7 4
family Corynebacteriaceae 935 779 444 13 28 8 5 12 2 7 1 4
family Coxiellaceae 46 48 2 1 1 1 4
family Crenotrichaceae 4
family Criblamydiaceae 44
family Crocinitomicaceae 2 28 1 3 1 3
family Cryomorphaceae 2 124 1 1
family Cryptococcaceae 13
family Cryptosporangiaceae 1 1
family Cryptosporidiidae 3
family Cyanobacteriaceae 297 42 1 1
family Cyanobacteriaceae 298 42 1
family Cyanobiaceae Salazar et al., 2020 4 5 1 4 1 4
family Cyanothecaceae 1
family Cyclobacteriaceae 389 4 1 4
family Cytophagaceae 1683 963 3 4 4 1 5 6 4
family Debaryomycetaceae 8 4
family Deferribacteraceae 481 148 1 4 3 3 4 4
family Defluviitaleaceae 382 18 3 3 9
family Dehalococcoidaceae 102 70 1 1 1 1 4
family Deinococcaceae 867 201 6 4 1 1 3 4 4
family Demequinaceae 18 82 1
family Dermabacteraceae 342 98 55 4 1 1 1 4
family Dermacoccaceae 16 33 2 1 1 1 1 4
family Dermatophilaceae 2 10 1 4
family Dermocarpellaceae 4 1
family Desulfallaceae Watanabe et al. 2020 826 282 1 3 1 7 4
family Desulfarculaceae 273 1 4
family Desulfobacteraceae 432 769 2 15 2 11 7 2 4
family Desulfobulbaceae 26 184 12 1 6 4
family Desulfocapsaceae 16 17 6 6 4
family Desulfohalobiaceae 318 84 3 7 2
family Desulfomicrobiaceae 103 334 20 6 7 4
family Desulfonatronaceae 321 48 2
family Desulfovibrionaceae 1762 1225 647 21 28 32 19 15 15 14 7 4
family Desulfurellaceae 6 13 11 2 3
family Desulfurobacteriaceae 23 1
family Desulfurococcaceae 3
family Desulfuromonadaceae 929 123 18 7 9 5 4
family Devosiaceae 606 85 4 2 1 4
family Diapheromeridae 1
family Dictyoglomaceae 105 2 1 2
family Dientamoebidae 1
family Dietziaceae 101 186 2 1 2 4
family Dysgonomonadaceae 1461 862 46 4 4 9 7 2 7 4
family Ectothiorhodospiraceae 1271 315 1 4 3 7 2 4
family Edwardsiidae 36 1
family Eggerthellaceae 1801 1366 774 35 28 35 19 21 15 14 7 4
family Egibacteraceae 1
family Egicoccaceae 1
family Elioraeaceae 3
family Elusimicrobiaceae 8 72 7 1 1 3
family Emcibacteraceae 192 2
family Endomicrobiaceae 1 2
family Endozoicomonadaceae 6 1 2
family Enterobacteriaceae 1767 829 594 30 28 32 17 21 19 17 7 4
family Enterococcaceae 1690 490 140 29 28 28 14 17 6 11 4 4
family Entomoplasmataceae 798 110 4 1 3 2 3
family Eriococcidae 1 11
family Erwiniaceae 438 430 177 4 4 2 1 11 2 4
family Erysipelotrichaceae 1839 1399 785 34 22 36 15 20 14 17 7 4
family Erythrobacteraceae 149 61 2 4 1 1 4
family Eubacteriaceae 1830 1400 300 35 25 36 12 21 17 13 7 4
family Eubacteriales Family XII. Incertae Sedis 516 797 18 6 8 6
family Eubacteriales Family XIII. Incertae Sedis 1535 1308 657 19 8 31 6 21 1 12 7 4
family Euzebyaceae 1092 96 1 1 1
family Fabaceae 469 11 1 2 1 3
family Fastidiosibacteraceae 16
family Faucheaceae 10
family Ferrimonadaceae 18 50 1 3
family Ferrovaceae 5
family Fervidobacteriaceae 23 1 4 1 1 3
family Fibrobacteraceae 139 287 140 1 2 4
family Fimbriimonadaceae 2 75 1
family Flammeovirgaceae 413 432 1 4 3 1 4
family Flavobacteriaceae 1605 631 456 1 4 3 7 13 2 7 4
family Flexibacteraceae 8 1 2 5
family Fortieaceae 16
family four o'clock family 1
family Francisellaceae 79 88 2 4 2 1 4
family Frankiaceae 3 9 4 1 4
family Fulvivirgaceae 10 180 4 2 1 3
family Fusobacteriaceae 845 641 121 4 28 7 9 4 2 2 6 4
family Gaiellaceae 53 2
family Gallionellaceae 229 29 1 1 2 4
family Geminicoccaceae 72 2
family Gemmataceae 11 15 1 1 1 4
family Gemmatimonadaceae 12 34 1 1 1 4
family Geobacteraceae 108 78 4 5 1 4
family Geodermatophilaceae 25 134 1 4 1 4
family Gloeobacteraceae 12 1 1 1 4
family Gloeotrichiaceae 3
family Glycomycetaceae 90 192 1 2 1 2
family Gomontiellaceae 114 1 2
family Gomphosphaeriaceae 44
family Gordoniaceae 74 134 1 4 1 4
family Gottschalkiaceae 193 22 7 3 4
family Gracilibacteraceae 608 9 3 3 7
family Granulosicoccaceae 89 1 2
family great apes 1
family Hafniaceae 92 59 14 2 13 2 7 1 4
family Hahellaceae 219 246 3 2 1
family Halanaerobiaceae 396 308 1 4 3 9 2 4
family Halieaceae 79 1 1 4
family Haliscomenobacteraceae 1 118 3
family Haloarculaceae 5 1
family Halobacteriaceae 10 1 1 2
family Halobacteriaceae Clade I 2 1
family Halobacteriovoraceae 7 36 4 1 4
family Halobacteroidaceae 58 493 1 3 3 4 3
family Haloferacaceae 1 1
family Halomonadaceae 697 582 1 4 2 4 3 3 4
family Haloplasmataceae 37 1 2
family Halorubraceae 2
family Halothiobacillaceae 38 142 2 3
family Hapalosiphonaceae 1
family Helicobacteraceae 532 56 3 28 9 2 1 4
family Heliobacteriaceae 804 289 1 4 2 9 6 5 4
family Herpetosiphonaceae 1 6
family Hesperiidae 8
family Heteroleibleiniaceae 15
family Holophagaceae 900 740 2 5
family Holosporaceae 1 3
family Hungateiclostridiaceae 592 726 142 7 4 35 1 8 6 6
family Hydrogenophilaceae 886 274 5 1 3 1 1
family Hydrogenothermaceae 29 1 1 3
family Hyellaceae 1
family Hymenobacteraceae 1220 248 2 4 1 9 1 4
family Hyphomicrobiaceae 868 144 4 1 2 1 5 4
family Hyphomonadaceae 117 762 1 2 1 5 3 4
family Iamiaceae 28 2
family Icacinaceae 6
family Ichthyobacteriaceae 1
family Idiomarinaceae 70 44 1 1 1 4
family Ignavibacteriaceae 38 51 1 1 2
family Ilumatobacteraceae 156 2
family Immundisolibacteraceae 3
family Intrasporangiaceae 72 84 4 1 4
family Isosphaeraceae 8 5 1 4 4
family Jatrophihabitantaceae 9 1
family Jiangellaceae 30 15 4 1 3
family Jonesiaceae 45 121 3
family Kaistiaceae 13 42 1
family Kallotenuaceae 21
family Kangiellaceae 42 1
family Kiloniellaceae 417 539 5 2
family Kineosporiaceae 22 105 1 1 3
family Kofleriaceae 151 37 3 4
family Kordiimonadaceae 211
family Kosmotogaceae 18 14 1 1 4
family Kribbellaceae 107 369 5
family Ktedonobacteraceae 1
family Kytococcaceae 1 2 1 3
family Labilitrichaceae 45 3
family Lachnospiraceae 1842 1400 790 35 28 36 26 21 21 18 7 4
family Lacipirellulaceae 17
family Lactobacillaceae 1788 1400 791 31 28 36 11 16 13 18 7 4
family Laqueidae 1
family Lawsonellaceae 1 3
family Legionellaceae 1222 96 1 4 1 8 3 4
family Lentisphaeraceae 4
family Leptolyngbyaceae 419 5 1 4 1 2 4
family Leptospiraceae 484 75 4 4 2 4
family Leptotrichiaceae 208 265 38 4 2 2 1 4
family Leuconostocaceae 1420 1274 102 3 4 9 1 9 6 2 6
family Lewinellaceae 82 9
family Limnochordaceae 4 1 4
family Listeriaceae 1236 336 1 1 12 4 3 4 1 4
family Litoricolaceae 132 42 1 3
family Luteibaculaceae Bowman 2020 1
family Magnetococcaceae 23 1 1 4
family Maricaulaceae 18 39 1
family Marinifilaceae 333 4 1 4 4
family Marinilabiliaceae 680 1 1 7 6 4
family Marinobacteraceae Liao et al. 2020 89 208 4 1 1 4
family Mariprofundaceae 40 1 1 1 4
family Marivirgaceae 2 1 2
family Melioribacteraceae 881 4 16 2 6
family Merismopediaceae 3 1
family Mesoaciditogaceae 7
family Methanobacteriaceae 474 278 220 5 21 3 12 6 2 11 1
family Methanocaldococcaceae 1 1 5
family Methanococcaceae 1 16 6
family Methanocorpusculaceae 4 1 1
family Methanomassiliicoccaceae 43 31 6 2
family Methanoregulaceae 2
family Methanosarcinaceae 7 3 18 6
family Methanotrichaceae 1
family Methylacidiphilaceae 12 1 1
family Methylobacteriaceae 117 73 4 4 1 4
family Methylococcaceae 9 262 1 4 3 4
family Methylocystaceae 30 23 4 1 4
family Methylophilaceae 774 314 1 1 1 2 4
family Methylothermaceae 60
family Microbacteriaceae 606 768 49 4 2 5 3 5 4
family Microbulbiferaceae 9 1 4 1 4
family Micrococcaceae 694 698 151 22 21 25 8 4 1 6 4
family Microcoleaceae 398 399 1 4 1 1 4
family Microcystaceae 9 1 2
family Micromonosporaceae 565 340 1 4 1 4 1 6 4
family Micropepsaceae 15
family Microscillaceae 189 1
family Microviridae 2 10 7
family Mooreiaceae 10
family Moraxellaceae 932 641 21 4 28 7 4 11 8 5 6 4
family Morganellaceae 276 624 17 1 27 17 5 11 1 10 7 4
family Moritellaceae 1 1 1 1
family Motilibacteraceae 19
family Muribaculaceae 4 2 1 4
family Mycobacteriaceae 304 128 59 2 4 1 2 1 4
family Mycoplasmataceae 1527 966 11 4 6 5 16 1 5 4
family Mycoplasmoidaceae 72
family Myoviridae 5 1
family Myxococcaceae 1 4 4 1 4
family Mzabimycetaceae 183
family Nakamurellaceae 2 4 1 4
family Nannocystaceae 114 28 1
family Natranaerobiaceae 52 1 2
family Nautiliaceae 5 42 1 1 2 4
family Nectriaceae 3
family Neisseriaceae 580 215 68 5 4 10 2 8 3 3 7 4
family Neomegalonemataceae 25 1
family Nitratiruptoraceae Waite et al. 2017 2 1
family Nitriliruptoraceae 6 6 2
family Nitrosomonadaceae 18 409 8 4 4 3 3 4
family Nitrosopumilaceae 6 6 1
family Nitrososphaeraceae 14 1
family Nitrospinaceae 5 5
family Nitrospiraceae 397 58 1 4 1 5 4
family Nocardiaceae 227 40 21 4 1 2 1 4
family Nocardioidaceae 275 530 1 4 2 6 4
family Nocardiopsaceae 409 4 1 1 2 4
family Nostocaceae 1570 5 4 2 1 5 7 4
family Oceanospirillaceae 464 381 4 1 1 4
family Odoribacteraceae 1713 1264 620 27 28 33 19 15 17 16 7 4
family Oleiphilaceae 3
family Oligoflexaceae 1
family Oligosphaeraceae 50
family Opitutaceae 18 55 1 4 1 1 4
family Orbaceae 14 4 1 2
family Ornithinimicrobiaceae 42 20 4 1 4
family Oscillatoriaceae 852 148 4
family Oscillochloridaceae 1 1
family Oscillospiraceae 1838 1400 787 35 28 36 21 21 20 18 7 4
family Oxalobacteraceae 1140 592 258 4 21 25 6 10 8 7 4
family Paenibacillaceae 1468 1213 1 4 29 4 10 6 7 4
family Paludibacteraceae 5 154 1 4 3 2 1 2 4
family Parachlamydiaceae 3 3 1
family Parvibaculaceae 2 4 1
family Parvoviridae 2
family Parvularculaceae 32 1
family Pasteurellaceae 1494 1085 548 19 6 29 9 16 7 17 7 4
family Pasteuriaceae 79
family Patulibacteraceae 1 6
family Pectobacteriaceae 82 543 2 4 1 1 1 3 4
family Pelagibacteraceae 4 1 1 3
family Peptococcaceae 1816 1313 520 4 28 24 11 14 9 7 4
family Peptoniphilaceae 1784 1303 506 9 27 7 7 16 8 7 4
family Peptostreptococcaceae 1617 1395 789 33 22 30 19 13 9 15 7 4
family Perlucidibacaceae Liao et al. 2020 3
family Persicobacteraceae 1 96 4 1
family Petrotogaceae 25 28 4 1 6 4
family phages with long non-contractile tails 1
family Phreatobacteraceae 1 1 4
family Phycisphaeraceae 2 1 4
family Phyllobacteriaceae 40 44 35 5 3 1 4
family Pirellulaceae Dedysh et al. 2020 4 46 1 4
family Piscirickettsiaceae 227 427 2 4 3 1 4
family Planctomycetaceae 12 121 1 1 4
family Planococcaceae 938 1171 39 17 22 5 21 6 7 4
family Plasmodiidae 2
family Pleioneaceae 4
family Pleomorphomonadaceae 7 8 1
family Polyangiaceae 69 6 1 4 1 1 4
family Porphyromonadaceae 1828 1386 524 22 22 35 8 16 3 10 7 4
family Porticoccaceae 2
family Prevotellaceae 1805 1389 569 16 28 21 20 20 3 17 7 4
family Prochloraceae 2 2 4 1 4
family Prochlorococcaceae 1
family Prochlorotrichaceae 8 3
family Prolixibacteraceae 189 1 1 4 4
family Promicromonosporaceae 6 77 4 2 1 4
family Propionibacteriaceae 71 604 118 9 21 13 4 4 4 4
family Proteidae 5 1 5
family Proteinivoraceae 1440 595 7 8 7
family Pseudanabaenaceae 526 8 4 2 2
family Pseudoalteromonadaceae 39 54 4 1 1 4
family Pseudococcidae 53 2 1
family Pseudomonadaceae 568 529 51 2 28 9 9 4 11 5 4
family Pseudonocardiaceae 520 470 4 1 3 4 4
family Pseudoxanthobacteraceae 5
family Psychromonadaceae 23 46 4
family Puniceicoccaceae 1070 484 7 1 1 5 4
family Pyrinomonadaceae 49
family Rarobacteraceae 72
family Reichenbachiellaceae 49
family Reyranellaceae 5
family Rhabdochlamydiaceae 150
family Rhizobiaceae 526 99 8 15 14 4 2 1 7 4
family Rhodanobacteraceae 1253 249 4 1 3 3 4
family Rhodobacteraceae 408 338 4 1 4 4 1 4 1 7 4
family Rhodobiaceae 5 11 3 4 4
family Rhodocyclaceae 1095 445 70 1 1 1 1 4
family Rhodospirillaceae 1490 1012 371 4 25 5 19 15 7 4
family Rhodothalassiaceae 18 15 1
family Rhodothermaceae 1693 210 4 6 2 7 1 4
family Rhodovibrionaceae 370 465 1 8
family Rickettsiaceae 932 251 4 1 10 6 4
family Rikenellaceae 46 1360 734 34 28 35 21 10 19 18 7 4
family Rivulariaceae 817 126 4 6
family Robiginitomaculaceae 49 2
family Roseiarcaceae 4
family Roseiflexaceae 2 15 1 4
family Roseivirgaceae 1 55
family Roseobacteraceae Pujalte et al. 2014 115 78 1 4 1 2 4
family Ruaniaceae 1 3
family Rubricoccaceae 11
family Rubritaleaceae 619 191 2 6
family Rubrobacteraceae 16 96 3 3 2 4
family Ruminococcaceae 1842 1400 787 28 4 36 3 21 21 18 7
family Saccharomycetaceae 8 7 5
family Saccharospirillaceae 48 518 1 1 3
family Salinibacteraceae 4
family Salinisphaeraceae 19 1
family Salinivirgaceae 1 1
family Salisaetaceae 326 168 1 4
family Sandaracinaceae 16 1
family Sanguibacteraceae 6 5 1 1 3
family Saprospiraceae 84 84 1 4
family Schleiferiaceae 20 1
family Scolopacidae 3
family Scytonemataceae 4 4
family Sedimentisphaeraceae 3 1 1
family Segniliparaceae 40 1 2 2
family Selenomonadaceae 1813 817 98 5 28 12 11 16 1 7 4
family Shewanellaceae 1134 183 27 10 8 5 4
family Simkaniaceae 12 1
family Sinobacteraceae 1362 181 2 1 1 9 4
family Sneathiellaceae 13
family Solanaceae 11
family Solibacteraceae 2 1 1
family Solirubrobacteraceae 15 28
family Sphaerobacteraceae 49 1 2
family Sphaerochaetaceae 4 2 1 1 4
family Sphingobacteriaceae 1837 712 4 4 24 5 19 4 7 4
family Sphingomonadaceae 681 730 17 4 14 2 7 1 6 4
family Sphingosinicellaceae 16 4 1 2
family Spirillaceae 4 14
family Spirochaetaceae 435 152 4 1 3 1 4
family Spiroplasmataceae 487 4 1 6 4
family Spirosomaceae 1458 792 4 2 3 4 6 4
family Spirulinaceae 12
family Spongiibacteraceae 213 1 1 2
family Sporichthyaceae 7 26 2
family Sporolactobacillaceae 543 196 1 2 1 4
family Sporomusaceae 1210 959 34 4 3 5 7 4
family Staphylinidae 3 3
family Staphylococcaceae 1410 431 207 3 28 3 11 9 6 5 5 4
family Stappiaceae 4 4 1 4
family Stellaceae 244 1 4
family Steroidobacteraceae 19 38
family Sterolibacteriaceae 281 67 11 4 1 4
family Streptococcaceae 1824 1397 775 34 28 36 19 21 17 16 7 4
family Streptomycetaceae 362 310 28 2 4 2 6 4
family Streptosporangiaceae 741 208 1 1 1 2 4
family Succinivibrionaceae 502 318 15 2 18 4 3 4
family Sulfolobaceae 5
family Sulfuricellaceae Watanabe et al. 2014 6 1 1 4
family Sulfurovaceae Waite et al. 2017 5 1 1 4
family Sutterellaceae 1805 1355 712 31 3 36 14 20 16 18 7 4
family Symbiobacteriaceae 1140 386 3 3 7 4
family Synechococcaceae 529 10 1 4 1 4
family Synergistaceae 1354 547 236 3 6 1 3 11 2 1 7 4
family Syntrophaceae 240 73 4 1 1 1 4
family Syntrophobacteraceae 533 487 1 2 7 2 4
family Syntrophomonadaceae 1526 660 11 4 3 4 5 4
family Syntrophorhabdaceae 40 1
family Syntrophotaleaceae 20 2
family Tannerellaceae 1815 1307 719 35 28 34 21 16 18 18 7 4
family Temperatibacteraceae 1
family Tepidamorphaceae 6
family Tepidanaerobacteraceae 644 16 1 1 2 4
family Terasakiellaceae 1
family Terrimicrobiaceae 4
family Thalassobaculaceae 79 3 2
family Thalassospiraceae 416 42 359 1 3 4
family Thermaceae 642 94 1 4 1 2 5 4
family Thermoactinomycetaceae 1190 734 1 4 4 4 6 4
family Thermoanaerobacteraceae 1579 408 212 4 4 11 4 4
family Thermoanaerobacterales Family III. Incertae Sedis 1774 225 25 1 7 13 7 4
family Thermoanaerobacterales Family IV. Incertae Sedis 42 1 2
family Thermoanaerobaculaceae 86
family Thermococcaceae 4 1 2 3
family Thermodesulfobacteriaceae 174 60 1 1 2 4
family Thermodesulfobiaceae 16 104 17 1 5 2 2
family Thermodesulfovibrionaceae 388 20 3 6
family Thermoflexaceae 4
family Thermoflexibacteraceae 121
family Thermogemmatisporaceae 190 7 1 3 4
family Thermoguttaceae Dedysh et al. 2020 40 1
family Thermohalobacteraceae Spring 2020 1069 4 4 8 4
family Thermoleophilaceae 65 1
family Thermolithobacteraceae 69
family Thermomicrobiaceae 1
family Thermomonosporaceae 589 79 4 1 2 3 4
family Thermonemataceae 43 4
family Thermoproteaceae 2
family Thermosediminibacteraceae 120 67 1 6 3
family Thermosporotrichaceae 19
family Thermosynechococcaceae 1
family Thermotogaceae 66 1 4 1 6 4
family Thermotomaculaceae 18 1
family Thioalkalibacteraceae 27 1 1
family Thioalkalispiraceae 58 1 3 4
family Thiobacillaceae 318 63 6 1 1 3
family Thiofilaceae 3
family Thiolinaceae 2
family Thioprofundaceae 7
family Thiotrichaceae 1267 94 1 1 11 3 3 1
family Thiovulaceae Waite et al. 2017 13 12 3 1 4
family Thorselliaceae 69
family Tissierellaceae 100 650 1 1 24 2 9 5 3 4
family Treponemataceae 433 65 23 9 5 1 4
family Trichocoleusaceae 3
family Trichocomaceae 1
family Tropherymataceae 79 1
family Trueperaceae 25 1
family Tsukamurellaceae 99 6 4 1 1 4
family Turicibacteraceae Verbarg et al. 2014 1222 821 475 16 4 8 6 16 3 11 5 4
family unclassified Actinobacteria (class) (miscellaneous) 1
family unclassified Bacillales 19 40
family unclassified Burkholderiales 200 198 18 15 4 3 3
family unclassified Clostridiales 719 782 32 4 35 6 8 3 1
family unclassified Rickettsiales 4
family Unionidae 242 1
family Ustilaginaceae 3
family Vallitaleaceae Quemeneur et al. 87 3 4 9 4
family Veillonellaceae 1841 1393 743 30 28 32 16 17 9 16 7 4
family Verrucomicrobia subdivision 3 18 30 2
family Verrucomicrobiaceae 1556 269 220 1 3 2 1 3 4
family Vibrionaceae 111 124 4 5 4 4
family Vicinamibacteraceae 1 4
family Victivallaceae 339 284 4 6 2 6 5
family Viviparidae 107 1 1
family Vulgatibacteraceae 3
family Waddliaceae 12 1
family Weeksellaceae 111 115 8 4 1 1 1 4
family Wenzhouxiangellaceae 48 1
family Woeseiaceae 1
family Xanthobacteraceae 37 21 1 1 6 4
family Xanthomonadaceae 1502 362 19 4 4 9 1 7 6 4
family Xenococcaceae 1
family Yersiniaceae 1373 215 20 2 22 6 10 10 13 4
family Zoogloeaceae 444 163 1 4 1 1 1 2 3 4
family Zymomonadaceae 1 1 13 3 4
forma specialis Buchnera aphidicola (Acyrthosiphon kondoi) 1
forma specialis Buchnera aphidicola (Acyrthosiphon pisum) 2
forma specialis Buchnera aphidicola (Aphis glycines) 1
forma specialis Buchnera aphidicola (Cinara cedri) 1
forma specialis Buchnera aphidicola (Cinara confinis) 1
forma specialis Buchnera aphidicola (Cinara pseudotaxifoliae) 1
forma specialis Buchnera aphidicola (Cinara tujafilina) 1
forma specialis Buchnera aphidicola (Diuraphis noxia) 1
forma specialis Buchnera aphidicola (Myzus persicae) 4
forma specialis Buchnera aphidicola (Schizaphis graminum) 1
forma specialis Buchnera aphidicola (Schlechtendalia chinensis) 1
forma specialis Buchnera aphidicola (Tuberolachnus salignus) 1
forma specialis Buchnera aphidicola (Uroleucon ambrosiae) 1
forma specialis cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake Yunoko 1
forma specialis endosymbiont of Bathymodiolus septemdierum str. Myojin knoll 1
forma specialis primary endosymbiont of Heteropsylla cubana 1
forma specialis Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 1
forma specialis Wigglesworthia glossinidia endosymbiont of Glossina morsitans 4
forma specialis Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) 3
genus 1
genus 1
genus 1
genus 1
genus 2
genus 1
genus 1
genus 1
genus 1 4
genus 1
genus 4
genus 2
genus 1
genus 1
genus 2
genus 1
genus 1
genus 1 4
genus 'Grimontella' 1
genus 'Haloanella' 2
genus 'Kouleothrix' 2
genus 'Terrahaemophilus' 1
genus Abiotrophia 106 167 9 2 2 2 3
genus Absiella 397 469 12 1 6 1
genus Abyssicoccus 2
genus Abyssivirga 1
genus Acanthopleuribacter 60
genus Acaryochloris 3
genus Accumulibacter 3 4
genus Acetanaerobacterium 691 123 1 3 9
genus Acetatifactor 1277 2 1 3 4
genus Acetilactobacillus 3
genus Acetitomaculum 974 138 1 3 3
genus Acetivibrio 1811 1296 32 2 4 26 9 9 7 4
genus Acetoanaerobium 730 1 4 7 4
genus Acetobacter 15 35 1 3 1 1 4
genus Acetobacterium 1804 619 2 4 4 17 7 4
genus Acetobacteroides 332
genus Acetohalobium 45 3 1 1 3
genus Acetomicrobium 16 52 1
genus Acetonema 323 2 2
genus Acholeplasma 1281 941 6 4 1 2 6 3 4
genus Achromatium 17
genus Achromobacter 150 1 4 9 1 1 2 4
genus Acidaminobacter 449 464 3 6 3
genus Acidaminococcus 1271 719 96 1 25 4 8 5 1 5 3 4
genus Acidianus 1
genus Acidibacter 56
genus Acidibrevibacterium 1
genus Acidicaldus 2
genus Acidicapsa 74 1
genus Acidiferrobacter 11 3
genus Acidihalobacter 1 1 4
genus Acidimicrobium 207 1 1
genus Acidiphilium 43 16 1 1 1 1
genus Acidipropionibacterium 23 1 13 3 4
genus Acidisoma 4
genus Acidisphaera 1 1
genus Aciditerrimonas 203 2
genus Acidithiobacillus 42 1 1 4
genus Acidobacterium 1 3 3
genus Acidocella 2 2
genus Acidothermus 57 1
genus Acidovorax 102 42 1 4 1 1 1 4 4
genus Acinetobacter 405 340 16 4 28 6 4 1 8 5 4 4
genus Acrocarpospora 4
genus Actibacter 1
genus Actimicrobium 7
genus Actinoallomurus 2
genus Actinoalloteichus 1 4 3
genus Actinobacillus 1027 329 90 4 7 4 7 5 4
genus Actinobaculum 138 8 17 7 1 2 2
genus Actinocatenispora 488 152 3
genus Actinocorallia 4 4 2
genus Actinokineospora 5 3
genus Actinomadura 47 47 1 1 2 4
genus Actinomyces 1327 1106 579 29 4 10 5 10 5 7 4
genus Actinomycetospora 10 2
genus Actinoplanes 17 131 4 1 4
genus Actinopolymorpha 115 2 1
genus Actinopolyspora 393 246 1 5 3
genus Actinorugispora 1
genus Actinosynnema 1 2
genus Actinotalea 2
genus Actinotignum 29 78 29 3 3
genus Acutalibacter 9
genus Adhaeribacter 38
genus Adlercreutzia 1355 537 26 25 5 8 6 1 6 6 4
genus Advenella 8 3 1 4
genus Aequorivita 2 9 1 2
genus Aeribacillus 31 1 1
genus Aeriscardovia 204
genus Aerococcus 26 405 16 4 1 2 4
genus Aeromicrobium 18 3 1 1 3 4
genus Aeromonas 167 7 1 4 4 1 4
genus Aerophilus 2
genus Aerosphaera 48
genus Aerosticca Watanabe et al. 2020 3
genus Aestuariibacter 2
genus Aestuariicola 2
genus Aestuariispira 552 2
genus Afifella 1
genus Afipia 5 1 3
genus Agaribacter 330
genus Agarilytica 1
genus Agarivorans 23 1
genus Agathobacter 1 1
genus Agathobaculum 1311 1 30 8 6 10
genus Aggregatibacter 475 250 172 3 1 2 4 8 1 5 3
genus Aggregicoccus 1
genus Agreia 2
genus Agrilactobacillus 164 3
genus Agrobacterium 81 4 1 4
genus Agrococcus 34 2 3 1 1 3
genus Agromyces 311 139 1 1 2 1 4
genus Ahniella 1
genus Ahrensia 1
genus Akkermansia 1572 1213 789 29 28 36 15 10 17 18 4 4
genus Albibacterium 1
genus Albidovulum 1 1
genus Albimonas 9
genus Alcaligenes 14 2 3 1 4
genus Alcanivorax 236 11 1 1 4
genus Algibacter 1 3 1 1
genus Algicola 52
genus Algimonas 17 2
genus Algiphilus 50
genus Algivirga 1
genus Algorimarina 2
genus Algoriphagus 130 3 1 1
genus Aliarcobacter 75 4 1 4 1
genus Alicycliphilus 11 5 1 3
genus Alicyclobacillus 2 199 3 3 3 4 4
genus Aliicoccus 3
genus Aliidiomarina 23
genus Aliifodinibius 226
genus Aliihoeflea 1
genus Aliivibrio 1 1 1
genus Alishewanella 320 72 2
genus Alistipes 1358 734 34 28 33 20 10 19 11 7 4
genus Alkalibacillus 139 5
genus Alkalibacter 141 2 3
genus Alkalibacterium 610 9 1 1 1 7
genus Alkalibaculum 301 1 2
genus Alkalicoccus 51
genus Alkaliflexus 55 3
genus Alkalihalobacillus 26 38 8 4 1 4
genus Alkalilimnicola 1 4
genus Alkalimarinus 16
genus Alkaliphilus 1795 387 4 4 7 16 7 4
genus Alkalispirillum 1
genus Alkalispirochaeta 1
genus Alkalitalea 1 4
genus Alkanibacter 1
genus Alkanindiges 13 3
genus Allisonella 268 68 2 3
genus Alloactinosynnema 4 2
genus Allobacillus 2
genus Allobaculum 126 199 8 2 2
genus Allocatelliglobosispora 2
genus Allochromatium 85 1 1
genus Allofrancisella 6 1
genus Allofustis 30 2 2
genus Allohahella 217 104 2
genus Alloiococcus 4 111 1
genus Allokutzneria 1 1 2
genus Alloprevotella 13 530 83 2 5 1 1 4
genus Alloscardovia 115 219 19 2
genus Allosphingosinicella 15
genus Alsobacter 2
genus Alteracholeplasma 33 65 1 1 1
genus Altererythrobacter 27 2 4 1 4
genus Alteribacillus 3
genus Alteribacter 14
genus Alterileibacterium 2 6
genus Alterococcus 36 1
genus Alteromonas 32 4 1 4
genus Altibacter 1
genus Alysiella 4
genus Amaricoccus 75 3 2
genus Amedibacillus 1219 464 12 1 6 1 2
genus Aminicella 850 1
genus Aminiphilus 183 5 5
genus Aminipila 1 4 1 4
genus Aminivibrio 82
genus Aminobacter 13 1 2 2 3
genus Aminobacterium 76 20 1 4
genus Aminomonas 64 4
genus Ammonifex 640 7 1 2
genus Ammoniphilus 68 48
genus Amoebophilus 1650 3 1 1 5
genus Amphibacillus 45 4 3
genus Amphritea 46 4
genus Amycolatopsis 27 5 4 1 1 4
genus Amylibacter 3
genus Amylolactobacillus 2
genus Anabaena 2 3
genus Anabaenopsis 1
genus Anaerobacillus 435 2 20
genus Anaerobacter 59
genus Anaerobacterium 48 47 3 1 4
genus Anaerobiospirillum 12 38 2
genus Anaerobium 411 19 1 9
genus Anaerobranca 1446 572 5 6 7
genus Anaerobutyricum 1264 1 30 21 32 9 9 15 4
genus Anaerocella 192
genus Anaerococcus 829 770 374 1 4 5 3 9 5 4
genus Anaerocolumna 1149 11 8 12 5 4
genus Anaerofilum 1811 764 249 5 8 2 21 7
genus Anaerofustis 424 915 204 9 6
genus Anaeroglobus 731 14 6
genus Anaerolinea 145 104 4 1 1 2
genus Anaeromassilibacillus 8 9 1 2
genus Anaeromusa 164 30 2
genus Anaeromyxobacter 1 690 1 1 1 4
genus Anaerophaga 17 1
genus Anaeroplasma 200 205 48 1 2 2
genus Anaerorhabdus 27
genus Anaerosacchariphilus 1 13
genus Anaerosalibacter 309
genus Anaerosinus 71 34 2
genus Anaerosphaera 156 2
genus Anaerospora 4 238
genus Anaerosporobacter 779 551 1 5 1
genus Anaerostipes 1628 1390 779 35 28 36 18 21 19 12 7 4
genus Anaerotaenia 3 1
genus Anaerotignum 1276 7 4 21 5 10 4 4
genus Anaerotruncus 1770 1130 731 22 29 11 11 2 7 7
genus Anaerovibrio 1656 17 9 1 3 10 1
genus Anaerovorax 89 276 13 1 3
genus Anaplasma 10 1
genus Ancylobacter 11
genus Anderseniella 1 4
genus Andreesenia 17
genus Andreprevotia 1
genus Aneurinibacillus 6 74 1 1 4
genus Angelakisella 7 21
genus Annandia 2
genus Annwoodia 1
genus Anoxybacillus 149 56 3 1 1 1 1 1 4
genus Anoxybacter 4 1 1 4
genus Anoxynatronum 845 3
genus Anseongella 1
genus Antarctobacter 1
genus Apibacter 1 1 3
genus Apilactobacillus 12 3
genus Aquabacterium 10 68 5 1 1
genus Aquamicrobium 19
genus Aquaspirillum 40 1
genus Aquibacter 7 1
genus Aquicella 1 10
genus Aquiflexum 11 1
genus Aquihabitans 23
genus Aquiluna 2 2
genus Aquimarina 8 38 4 1 4
genus Aquimonas 9 19
genus Aquincola 9
genus Aquipuribacter 6
genus Aquirhabdus 1
genus Aquisalibacillus 3
genus Aquisalimonas 74
genus Aquisphaera 2 3
genus Aquitalea 17 7 4 1 4
genus Arabia 1 1 1 4
genus Arachidicoccus 3 1 4
genus Arachnia 1 1 2 1 4
genus Arcanobacterium 69 35 31 1 1 2 4
genus Archaeoglobus 1 2 2
genus Archangium 12 1 2
genus Arcicella 1 121 2
genus Arcobacter 114 21 1 4 1 1 4
genus Arcobacter group 67 18 1 4 1 1 4
genus Arcticibacterium 1
genus Ardenticatena 21 2
genus Arenibacter 4 2 3
genus Arenimonas 7 37
genus Arhodomonas 14
genus Aridibacter 18
genus Armatimonas 1 1
genus Aromatoleum 1
genus Arsenicicoccus 5 1
genus Arsenophonus 36 32 1
genus Arthrobacter 219 8 10 4 1 1 2 1 4
genus Arthromitus 4 1 4
genus Arthronema 9 1
genus Arthrospira 20 6 1 1
genus Asaccharobacter 11 1 7
genus Asaccharospora 99 1
genus Asaia 4 1
genus Asinibacterium 11
genus Aspergillus 4 1
genus Asteroleplasma 377 73 1 3
genus Asticcacaulis 680 71 1 2 1 1
genus Atelocyanobacterium 1
genus Atlantibacter 1
genus Atopobacter 7
genus Atopobium 611 516 98 3 1 3 4 3
genus Atopococcus 24
genus Atopomonas 6
genus Atopostipes 102 2
genus Aurantiacibacter 12 1
genus Aurantimicrobium 1 3
genus Aurantimonas 20
genus Auraticoccus 3 3
genus Aureibacter 5
genus Aureicoccus 1
genus Aureimonas 12 1 3
genus Aureispira 1
genus Aureitalea 3
genus Auricoccus 1
genus Auritidibacter 1 3
genus Austwickia 1 2
genus Avibacterium 196 87 1 2 4
genus Azoarcus 104 4 1 1 1 4
genus Azohydromonas 10 2
genus Azomonas 7
genus Azonexus 21 1
genus Azorhizobium 6 2
genus Azorhizophilus 3
genus Azospira 13 6 9 1 1 4
genus Azospirillum 365 370 4 2 1 7 3 2 4
genus Azotobacter 4 1 4
genus Babela 2
genus Bacillus 7 6 1 1
genus Bacillus 1263 606 66 1 28 27 5 17 8 6 4
genus Bacteria 1
genus Bacterioplanes 1 1
genus Bacteriovorax 8 70 1 1
genus Bacteroides 1842 1400 783 35 28 35 26 21 21 18 7 4
genus Baia 103
genus Balneatrix 29
genus Balneola 69 300
genus Bariatricus 1 3
genus Barnesiella 1056 413 14 28 4 10 9 10 2 4
genus Barrientosiimonas 31
genus Bartonella 59 15 4 1 4
genus Basfia 7 1 1
genus Basilea 4 1
genus Bdellovibrio 26 10 1 1 1 1 4
genus Beduini 1 1
genus Beggiatoa 3 1 1
genus Beijerinckia 2 1
genus Belliella 24 3
genus Bellilinea 7 1
genus Belnapia 4 1
genus Bergeyella 27 5
genus Bermanella 2
genus Bernardetia 107 1
genus Berryella Wylensek et al. 2020 3 1 1 4
genus Beutenbergia 1
genus Bibersteinia 4 1 1
genus Bifidobacterium 1818 1388 790 33 28 36 18 21 16 18 6 4
genus Bigelowiella 2 2
genus Bilophila 1653 4 606 21 1 32 12 14 14 14 7 3
genus Biomaibacter 1 4
genus Biostraticola 28
genus Bisgaardia 107 1
genus Bittarella 8 8 2
genus Bizionia 2 2
genus Blastocatella 1
genus Blastochloris 6 1 2
genus Blastococcus 13 1 1 1
genus Blastocystis 2
genus Blastomonas 10 1 1
genus Blastopirellula 17
genus Blattabacterium 4 1 4
genus Blautia 1842 1400 788 34 28 36 26 21 21 18 7 4
genus Blochmannia 432 4 6
genus Bogoriella 11
genus Bombilactobacillus 136
genus Bombiscardovia 19 16
genus Bordetella 52 4 1 4
genus Borrelia 19 2 4 3
genus Borreliella 4 3
genus Bosea 7 1 4 1 4
genus Bosea 4
genus Boseongicola 2
genus Boudabousia 19
genus Bounagaea 1
genus Bowdeniella 26
genus Bowmanella 67
genus Brachybacterium 306 27 5 1 1 1 4
genus Brachymonas 3
genus Brachyspira 24 13 4 1 4
genus Brackiella 16
genus Bradymonas 1 1
genus Bradyrhizobium 50 2 10 4 1 1 4
genus Brassicibacter 969 4 3 5
genus Brenneria 60 492 1 1 3 4
genus Breoghania 1
genus Brevefilum 1 1
genus Brevibacillus 168 121 4 1 1 1 4
genus Brevibacterium 163 137 60 28 4 1 7 4
genus Brevifollis 27
genus Brevinema 5 1
genus Brevirhabdus 1
genus Brevundimonas 40 45 7 4 1 2 3 4
genus Breznakia 3
genus Breznakibacter 17 2
genus Brochothrix 1115 52 1 1 1 1 4
genus Brockia 28
genus Brucella 15 1 4 2 1 4
genus Bryobacter 19
genus Buchnera 4 1 4
genus Bulleidia 360 77 2 2 5
genus Burkholderia 530 40 1 4 11 1 1 5 4
genus Buttiauxella 166 1
genus Butyribacter 2 1 1
genus Butyricicoccus 837 77 31 34 7 8 17 1 4
genus Butyricimonas 1404 1102 455 14 22 29 14 13 10 15 7 4
genus Butyrivibrio 1200 1360 417 29 28 28 12 9 1 3 7 4
genus Bythopirellula 17
genus Caballeronia 25 4 1
genus Caedibacter 4
genus Caenispirillum 25
genus Caldalkalibacillus 181 2
genus Caldanaerobacter 75 114 1 1 1 2
genus Caldanaerobius 51 3
genus Caldanaerovirga 5
genus Caldibacillus 2 3 1 4
genus Caldicellulosiruptor 1679 112 4 1 4 13 6 4
genus Caldicoprobacter 48 119
genus Caldilinea 591 9 3 7 3
genus Caldimicrobium 2 1
genus Caldimonas 28
genus Caldinitratiruptor 374 7
genus Caldisalinibacter 634 2
genus Caldisericum 10 1
genus Caldisphaera 1
genus Calditerricola 4
genus Calditerrivibrio 6 1 1
genus Caldithrix 346 15 1 1 7
genus Calochaete 16
genus Caloramator 1795 943 1 2 9 9 13 7 4
genus Caloranaerobacter 2 7 4
genus Caloribacterium 15
genus Calothrix 761 125 4 6
genus Camelimonas 3
genus Caminibacter 2 3 2
genus Caminicella 26 857 3
genus Campylobacter 666 502 263 3 28 7 10 6 7 7 4
genus Candida 3 3
genus Candida 8 3
genus Candidatus Azobacteroides 91 4
genus Candidatus Desulforudis 1 3
genus Candidatus Methanoregula Brauer et al. 2006 1
genus Candidatus Methylospira Danilova et al. 2016 1
genus Candidatus Nitrosoglobus 1
genus Candidatus Tenderia Eddie et al. 2016 1 4
genus Candidatus Velamenicoccus Kizina et al. 2022 1 1
genus Candidatus Viadribacter Braun and Szewzyk 2016 4
genus Candidatus Walczuchella 1
genus Candidimonas 1
genus Canicola 90
genus Canis 5
genus Capnocytophaga 20 16 2 4 1 1 1 4
genus Caproiciproducens 1 4 29 1 9 4
genus Carboxydocella 1038 69 1 4 3 2 4
genus Carboxydothermus 43 4
genus Carboxylicivirga 310 1 1
genus Cardinium 1
genus Cardiobacterium 39 136 2 1 4
genus Carnimonas 25
genus Carnobacterium 80 5 8 4 1 1 2 4
genus Carsonella 1
genus Casaltella 901 3 6
genus Castellaniella 1
genus Catabacter 230 99 1 8 1 6
genus Catellatispora 2
genus Catellicoccus 1
genus Catenibacterium 553 422 292 14 2 4 8 2
genus Catenisphaera 111 1 2
genus Catenovulum 3 1
genus Catenulispora 8 4 2
genus Catonella 1183 1362 1 1 16 3 6 4
genus Caulobacter 11 16 1 4 1 4
genus Cecembia 18
genus Cedecea 110 3 4
genus Celeribacter 3 4
genus Celerinatantimonas 6
genus Cellulomonas 44 142 4 4 1 4
genus Cellulophaga 4 4 2
genus Cellulosibacter 183
genus Cellulosilyticum 1303 15 4 2 1 10 4
genus Cellulosimicrobium 4 1 1 3
genus Cellvibrio 25 52 3 1 3
genus Cenarchaeum DeLong and Preston 1996 2
genus Centipeda 6
genus Cerasicoccus 406 246 1 3 1
genus Cereibacter 3 9 2 1 1
genus Cesiribacter 40
genus Cetobacterium 99 55 4 2 1
genus Chamaesiphon 5 3
genus Chania 15 3
genus Chelativorans 2 9 1
genus Chelatococcus 4 5 1
genus Chelonobacter 52 2 1
genus Chiayiivirga 1
genus Chishuiella 6
genus Chitinilyticum 3
genus Chitinimonas 24 1
genus Chitinispirillum 19 2
genus Chitinivibrio 2
genus Chitinivorax 15
genus Chitinolyticbacter 1 1
genus Chitinophaga 70 34 3 4 1 4
genus Chlamydia 1 2 1 1 2
genus Chloracidobacterium 17 3
genus Chlorobaculum 1505 7 4 1 11 2 4
genus Chlorobium 4 1 1 4
genus Chloroflexus 3 1
genus Chlorogloeopsis 17
genus Chloroherpeton 9 28
genus Chondrocystis 1
genus Chondromyces 69 1 1 1
genus Christensenella 348 180 28 4 16 3 10 1 2 7 4
genus Chromatium 358 7
genus Chromobacterium 161 19 12 4 1 4
genus Chromocurvus Csotonyi et al. 2011 1
genus Chromohalobacter 1 3 1
genus Chroococcidiopsis 1 1 1 4
genus Chroococcus 743 2 2
genus Chryseobacterium 143 43 2 4 1 1 6 4
genus Chryseoglobus 2
genus Chryseolinea 41 4 3
genus Chryseomicrobium 32 2
genus Chthoniobacter 31 12
genus Chthonomonas 6 166 3
genus Citreitalea 1
genus Citricoccus 5 1 2
genus Citrifermentans 2 10 2
genus Citrobacter 340 16 55 9 27 17 8 17 4 3 4
genus Citromicrobium 3
genus Clavibacter 1 4 3
genus Cloacibacillus 150 165 106 3 1 2 1 1 4
genus Cloacibacterium 17 2 3 1 1
genus Cloacimonas 1
genus Clostridiisalibacter 16
genus Clostridioides 133 488 33 20 3 15 5 6 4
genus Clostridium 1841 1393 778 34 28 35 26 21 1 17 7 4
genus Cnuella 3
genus Cobetia 1 1 4
genus Cocleimonas 2
genus Coenonia 11
genus Cognaticolwellia Liu et al. 2020 1
genus Cohaesibacter 1 1
genus Cohnella 572 69 4 3 3 7 4
genus Coleofasciculus 1
genus Colidextribacter 1 23 9
genus Collimonas 10 36 4 1 4
genus Collinsella 1491 1193 771 23 28 32 9 14 14 7 4
genus Colwellia 2 51 4 1 3
genus Comamonas 171 46 22 3 1 8 1 4
genus Commensalibacter 3
genus Companilactobacillus 222 175 1 4 1 1 4
genus Conchiformibius 7 5
genus Conexibacter 7 8
genus Confluentimicrobium 1
genus Congregibacter 5
genus Constrictibacter 2 1
genus Contubernalis 256 5
genus Coprobacillus 1788 693 155 27 2 5 6 12 3 7 2
genus Coprobacter 767 337 9 9 2 5 1
genus Coprococcus 1838 1399 2 34 24 31 21 21 2 17 7 4
genus Coprophilus 2
genus Coprothermobacter 16 83 7
genus Coraliomargarita 497 103 1
genus Corallibacter 1
genus Corallococcus 4 4
genus Coriobacterium 141 73 3 2 1 4
genus Corticibacter 4
genus Corynebacterium 935 774 444 13 28 8 5 12 7 1 4
genus Couchioplanes 1 18
genus Coxiella 29 1
genus Crassaminicella 1 4
genus Craurococcus 2
genus Crenothrix 4
genus Criblamydia 44
genus Crinalium 1 1
genus Croceibacter 9 1
genus Croceibacterium 1
genus Croceicoccus 1 1
genus Cronobacter 90 83 6 4 1 4
genus Cruoricaptor 67 1
genus Cryobacterium 1 3 11 1 4
genus Cryomorpha 117
genus Cryptanaerobacter 10
genus Cryptobacterium 515 1 1 1 3 3
genus Cryptococcus 13
genus Cryptosporangium 1
genus Cryptosporidium 3
genus Cucumibacter 2
genus Culturomica 8
genus Cuneatibacter 10
genus Cupidesulfovibrio 2 17
genus Cupriavidus 13 73 1 4 1 1 4
genus Curtobacterium 18 1 1 1 4
genus Curvibacter 46 7 6 1 1 2 2
genus Cutibacterium 7 12 29 2 1 1 4
genus Cyanobacterium 298 42 1 1
genus Cyanobium 4 1 1 1 4
genus Cyanothece 1
genus Cyclobacterium 67 4
genus Cycloclasticus 24 22 1 1 3
genus Cyclonatronum 3
genus Cylindrospermum 1
genus Cystobacter 76 49 1
genus Cytobacillus 136 1 4 1 4
genus Cytophaga 64 1 2 2
genus Dactylococcopsis 3
genus Dactylosporangium 35 8
genus Dasania 34
genus Dechloromonas 159 9 1 4
genus Deefgea 3 8
genus Deferribacter 211 45 4 4
genus Deferrisoma 33 1
genus Defluviicoccus 11 1
genus Defluviimonas 3 1
genus Defluviitalea 331 2 3 3
genus Defluviitoga 20 1
genus Dehalobacter 3 293 4 3 1 4
genus Dehalobacterium 745 2 9 1 2 3 7 3 4
genus Dehalococcoides 3 70 1 1 1 1 4
genus Dehalogenimonas 102 180 4 1 2
genus Deinococcus 867 201 6 4 1 1 3 4 4
genus Delftia 25 19 64 3 4
genus Dellaglioa 129 11
genus Demequina 19 81 1
genus Dendrosporobacter 71
genus Denitratisoma 209 15 1 4
genus Denitrobacter 6
genus Denitrobacterium 4 1 1 6 1 4
genus Denitrovibrio 3
genus Dependoparvovirus 2
genus Dermabacter 69 78 52 1 1 3
genus Dermacoccus 15 1 1 1 1 3
genus Dermatophylus 2 2
genus Derxia 51
genus Desemzia 2 310
genus Desertibacter 5
genus Deserticella 19
genus Desmospora 9
genus Desulfacinum 91 2
genus Desulfallas 53 1 3 4
genus Desulfarculus 163 1 4
genus Desulfatibacillum 5 10 3 2
genus Desulfatiferula 32
genus Desulfatiglans 18
genus Desulfatirhabdium 2
genus Desulfatitalea 8
genus Desulfitibacter 3 145 1 2 1
genus Desulfitispora 56 2
genus Desulfitobacterium 317 137 1 28 6 3 4
genus Desulfobacca 2 28 1 1
genus Desulfobacter 108 14 6 5 2
genus Desulfobacterium 1 347 1 1 1 4
genus Desulfobacula 1 7 5
genus Desulfobaculum 19
genus Desulfobotulus 8
genus Desulfobulbus 12 154 11 6 4
genus Desulfocapsa 10 2 3 5
genus Desulfocarbo 150
genus Desulfocella 368 1 2 6
genus Desulfococcus 9 3 12 6 4
genus Desulfoconvexum 1
genus Desulfocurvibacter 1 1 3
genus Desulfocurvus 5
genus Desulfofaba 14 61
genus Desulfofarcimen 50 302 4 1 2
genus Desulfofrigus 213 51
genus Desulfofundulus 305 127 1 4
genus Desulfofustis 12
genus Desulfoglaeba 310
genus Desulfohalobium 3 3 2
genus Desulfohalophilus 1
genus Desulfohalotomaculum 189 985 1 1
genus Desulfohalovibrio 3 94
genus Desulfomicrobium 103 317 20 6 7 4
genus Desulfomonile 237 15 1 1
genus Desulfonatronobacter 7
genus Desulfonatronovibrio 243 14 2
genus Desulfonatronum 321 48 2
genus Desulfonauticus 95 40 7
genus Desulfonema 41 2
genus Desulfonispora 118
genus Desulfopila 2 1 4
genus Desulfoplanes 45
genus Desulforegula 83 2
genus Desulforhabdus 1
genus Desulforhopalus 4
genus Desulfosalsimonas 4
genus Desulfosarcina 112 22 1 4
genus Desulfoscipio Watanabe et al. 2020 18 1 1 4
genus Desulfosoma 181 2
genus Desulfosporosinus 832 300 1 16 1 6 6 7 4
genus Desulfotalea 5 1 4 5
genus Desulfothermus 16
genus Desulfotignum 3
genus Desulfotomaculum 1012 1152 2 4 17 9 7 9 7 4
genus Desulfovibrio 1513 1213 382 7 28 20 17 14 7 10 7 4
genus Desulfovirga 36
genus Desulfurella 6 6 11 2
genus Desulfuribacillus 9 1
genus Desulfurispira 3
genus Desulfurispirillum 309 1 1 1 1
genus Desulfurispora 994 788 2 2 2
genus Desulfurivibrio 5 3 2 2
genus Desulfurobacterium 9 1
genus Desulfurococcus 1
genus Desulfuromonas 84 67 15 6 4
genus Desulfuromusa 885 4 1 9 5
genus Dethiobacter 52 9 1 2 3 1
genus Dethiosulfatibacter 465 2
genus Dethiosulfovibrio 1001 148 1 6 6
genus Devosia 612 82 4 2 1 4
genus Devriesea 1 3
genus Dialister 1205 1239 475 13 4 10 11 9 4 14 5 4
genus Diaminobutyricimonas 2
genus Diaphorobacter 7 9 1 1 4
genus Dichelobacter 1 1
genus Dichotomicrobium 12
genus Dickeya 32 81 4 1 1 4
genus Dictyoglomus 105 2 1 2
genus Dielma 730 309 15 9 1 7
genus Dientamoeba 1
genus Dietzia 101 186 1 1 4
genus Dinoroseobacter 1
genus Diplorickettsia 13
genus Discophora 6
genus Dispar 9
genus Dissulfuribacter 10
genus Dokdonella 708 49 1 1 1
genus Dokdonia 26 4
genus Dolichospermum 1216 2 1 4 7
genus Dolosicoccus 11 1
genus Dolosigranulum 305 1 4
genus Dongia 193 3
genus Dorea 1819 1385 779 35 35 17 20 17 18 7 4
genus Draconibacterium 34 1 4
genus Drancourtella 3 10 3
genus Duganella 3 1 3
genus Duncaniella 4 1 4
genus Duodenibacillus 7 2 1
genus Dyadobacter 479 83 4 1 4 3
genus Dyella 8 8 1 1 4
genus Dysgonomonas 1465 873 10 4 9 7 2 7 4
genus Dysosmobacter 9 18 4 4
genus Echinicola 57 4 1 4
genus Ectobacillus 30 2
genus Ectothiorhodosinus 4
genus Ectothiorhodospira 301 45 1 1
genus Edaphobacter 209 1 2
genus Edwardsiella 92 31 3 3 4
genus Edwardsiella 36 1
genus Effusibacillus 298 5
genus Eggerthella 1387 1186 575 34 28 24 14 11 8 8 6 4
genus Eggerthia 535 1 1
genus Egibacter 1
genus Egicoccus 1
genus Ehrlichia 491 13 1 1 1 2
genus Eikenella 19 7 5 1 1 2 4
genus Eilatimonas 2
genus Eionea 1
genus Eisenbergiella 1084 519 3 24 7 10 8 6
genus Eisenibacter 188
genus Ekhidna 1
genus Elioraea 3
genus Elizabethkingia 5 22 4 1 4
genus Elstera 4
genus Elusimicrobium 8 72 7 1 1
genus Emcibacter 209 2
genus Emergencia 2 10 1
genus Empedobacter 8 1 3
genus Emticicia 1259 174 2 1 2 5 3
genus Endobacter 1
genus Endobugula 111
genus Endolissoclinum 1
genus Endomicrobium 1 2
genus Endozoicomonas 5 1 2
genus Enhydrobacter 38
genus Enorma 175 68 2 3 1 1
genus Ensifer 5 1 1 4
genus Enterobacter 796 67 208 6 28 9 9 12 2 15 7 4
genus Enterocloster 1239 2 31 25 33 13 10 6 4
genus Enterococcus 1499 284 138 29 28 27 13 15 6 9 4 4
genus Enterorhabdus 536 263 12 7 1 8
genus Enteroscipio 2
genus Enterovibrio 1
genus Entomomonas 1
genus Entomoplasma 10 31 4 2
genus Epibacterium 1
genus Epidermidibacterium 2
genus Epilithonimonas 11 3 1
genus Epulopiscium 59 3 1
genus Ercella 379
genus Ereboglobus 3 4
genus Eremococcus 37 21 1
genus Eremococcus 1 11
genus Erwinia 438 237 1 4 1 2 1 11 2 4
genus Erysipelatoclostridium 1388 756 31 22 35 9 10 14 7 4
genus Erysipelothrix 1546 844 3 3 9 6 7 4
genus Erythrobacter 130 18 1 1 1 4
genus Erythromicrobium 13
genus Escherichia 1484 71 1 26 28 11 14 10 12 1 6 4
genus Ethanoligenens 881 1131 4 4 13 4
genus Eubacterium 1737 1400 151 35 25 36 12 12 17 13 7 4
genus Eudoraea 56
genus Euryhalocaulis 8
genus Euzebya 1092 96 1 1 1
genus Euzebyella 1
genus Evansella 1
genus Evtepia 12 5
genus Exiguobacterium 31 48 4 1 3 4
genus Exophiala 1
genus Extensimonas 1
genus Extibacter 7
genus Ezakiella 387 1 3 3 4
genus Fabibacter 6
genus Facklamia 164 1065 50 2 7 1 3
genus Faecalibacterium 1842 1394 771 35 28 35 18 11 6 18 7 4
genus Faecalibaculum 1 1 4
genus Faecalicatena 861 21 2
genus Faecalicoccus 816 1 3 3 5
genus Faecalimonas 2
genus Faecalitalea 189 168 20 4 18 5 4
genus Falcatimonas 1 14 1
genus Fallax 1
genus Falsiporphyromonas 325 2
genus Falsirhodobacter 1
genus Fangia 12
genus Fannyhessea 231 2
genus Fastidiosipila 157 74 3 1 1 4
genus Fenollaria 711 2 4 6
genus Fermentimonas 4 1 4
genus Ferrimicrobium 21 2 1
genus Ferrimonas 18 48 1 3
genus Ferriphaselus 2
genus Ferrithrix 242
genus Ferrovibrio 2
genus Ferrovum 5
genus Ferruginibacter 99
genus Fervidicella 13 1
genus Fervidobacterium 21 4 1
genus Fibrella 2 3 1 4
genus Fibrobacter 139 283 85 1 2 4
genus Fictibacillus 48 4 1 4
genus Filifactor 531 472 13 18 4 1 4
genus Filimonas 4
genus Filomicrobium 2
genus Fimbriimonas 2 75 1
genus Finegoldia 929 979 443 3 26 5 5 9 4 1 4
genus Fischerella 1
genus Flagellimonas 1 1
genus Flammeovirga 412 33 4 1 1 3
genus Flaviaesturariibacter 1
genus Flavicella 4
genus Flaviflexus 26 3 1 4
genus Flavihumibacter 3
genus Flavilitoribacter 8
genus Flavisolibacter 46 1 1 4 1 1 4
genus Flavitalea 9
genus Flavivirga 1
genus Flavobacterium 102 42 395 4 5 7 4
genus Flavonifractor 1359 767 34 22 31 12 10 1 7 4
genus Flectobacillus 1 86
genus Flexibacter 8 1 2
genus Flexispira Bryner 1987 4
genus Flexistipes 96 1
genus Flexithrix 12
genus Flintibacter 1 25 2 9 4
genus Fluoribacter 1
genus Fluviicola 2 17 1 3 1 3
genus Fluviimonas 562 1
genus Fluviispira 3
genus Fodinibius 5 2
genus Fodinicola 1
genus Fodinicurvata 475 1 8
genus Fontibacillus 4
genus Fontibacter 39
genus Fonticella 168 2
genus Formosa 2 4 3
genus Fournierella 1 6 16 1
genus Francisella 79 70 2 4 2 1 4
genus Franconibacter 12
genus Frankia 3 4 1 4
genus Frateuria 3 1
genus Frederiksenia 4 1
genus Fretibacter 15
genus Fretibacterium 9 98 2 1 4
genus Friedmanniella 30 40 1 1 2
genus Frigoribacterium 2
genus Frischella 2 3 1
genus Frisingicoccus 8
genus Frondihabitans 1 3
genus Fructilactobacillus 86 112 1 1 1 2
genus Fructobacillus 87 39
genus Fuchsiella 34 1
genus Fucophilus 2
genus Fulvibacter 1
genus Fulvimarina 1
genus Fulvitalea 80
genus Fulvivirga 10 100
genus Furfurilactobacillus 749 44 1 1
genus Fusarium 3
genus Fuscovulum Suresh et al. 2019 3 1
genus Fusibacter 108 286 3 6 6
genus Fusicatenibacter 1366 761 17 4 16 1
genus Fusobacterium 800 612 121 4 28 5 9 4 1 2 6 4
genus Gabonia Mourembou et al. 2015 2
genus Gabonibacter 10 1 2
genus Gaetbulibacter 1
genus Gaiella 53 2
genus Galenea 48 2
genus Gallaecimonas 4
genus Gallibacterium 31 71 1 1 1 1 1
genus Gallicola 79 70 1
genus Gallionella 229 23 1 2
genus Garciella 22 2
genus Gardnerella 92 183 40 1 1 1 2 4
genus Garicola 2
genus Garritya 2
genus Geitlerinema 1
genus Gelria 9 211 2
genus Gemella 1687 794 154 16 4 3 5 7 6 4
genus Geminicoccus 91 2
genus Geminisphaera 10
genus Geminocystis 1
genus Gemmata 11 12 1 1 1
genus Gemmatimonas 12 24 1 4
genus Gemmatirosa 8 1 4
genus Gemmiger 1260 12 16 7 9
genus Gemmobacter 2 4 1
genus Geoalkalibacter 13 1 4
genus Geobacillus 557 82 7 1 11 1 3 1 3 4
genus Geobacter 108 57 4 5 1 4
genus Geodermatophilus 7 18 2 1 1
genus Geofilum 146
genus Geomicrobium 27
genus Geopsychrobacter 6
genus Georgenia 20 37 3
genus Georhizobium 1
genus Geosporobacter 4 2 4
genus Geothermobacter 2
genus Geothermomicrobium 2
genus Geothrix 900 610 2 3
genus Geotoga 1
genus Geovibrio 15 1 3 3
genus Gibbsiella 4
genus Giesbergeria 21 1
genus Gilliamella 1
genus Gillisia 1115 42 1 1
genus Gilvimarinus 1
genus Gimesia 4
genus Glaciecola 257 78 3 2
genus Glaciimonas 2
genus Glaesserella 4 1 1 1
genus Gleimia 63 53 1
genus Globicatella 22 2 1
genus Gloeobacter 12 1 1 1 4
genus Gloeothece 1 1
genus Gloeotrichia 3
genus Glomeribacter 711 2 1 3
genus Gluconacetobacter 7 8 1
genus Gluconobacter 154 3 1 1 4
genus Glutamicibacter 152 68 1 4
genus Glycocaulis 1 1
genus Glycomyces 90 26 1 1
genus Gorbachella 1 1 1
genus Gordonia 74 133 1 4 1 4
genus Gordonibacter 854 457 25 1 24 2 7 3 4
genus Gottschalkia 210 22 7 3 4
genus Gracilibacillus 249 1
genus Gracilibacter 608 3 2 3 6
genus Gracilimonas 373 2 3
genus Gramella 63 2 4 1 6 4
genus Granulibacter 4 3
genus Granulicatella 823 170 321 13 2 10 3 5 2
genus Granulicella 106 21 1 4
genus Granulosicoccus 87 1
genus Gryllotalpicola 10 1 2
genus Gudongella 1 1 4
genus Guggenheimella 492 2 6
genus Guizotia 11
genus Gulbenkiania 13
genus Gullanella 2
genus Gulosibacter 82 11 29 1 2
genus Guyparkeria 27 1 1
genus Gynuella 48 1
genus Haematobacter 3
genus Haematospirillum 2
genus Haemophilus 1370 1008 528 19 6 21 8 5 7 17 6 4
genus Hafnia 14 2 10 2 7
genus Hahella 219 240 3 1
genus Halanaerobacter 16 5 4
genus Halanaerobaculum 6
genus Halanaerobium 396 14 4 1 4 2 4
genus Halarcobacter 9 2 1
genus Halarsenatibacter 96
genus Haliangium 151 34 3 4
genus Haliea 7
genus Halioglobus 1 1 4
genus Haliscomenobacter 1 108 3
genus Haloactinopolyspora 2
genus Halobacillus 31 4 1 4
genus Halobacter 2
genus Halobacteriovorax 7 36 4 1 4
genus Halobacteroides 8 1
genus Halobaculum 2
genus Halocella 13 4 1 3
genus Halochromatium 101 237 2
genus Halodesulfovibrio 6
genus Haloechinothrix 4
genus Haloferax 1
genus Haloferula 46 2
genus Haloglycomyces 1
genus Halolactibacillus 41
genus Halomicroarcula 1
genus Halomicronema 2 3
genus Halomonas 182 528 1 4 1 3 1 3 4
genus Halonatronum 5
genus Haloplasma 37 1 2
genus Halopolyspora 184 2
genus Halopseudomonas 8
genus Halorhodospira 48 116 1 1 2 1
genus Halospina 8
genus Halospirulina 1
genus Halotalea 1
genus Halothermothrix 204 1 2 5
genus Halothiobacillus 37 54 2 3
genus Haploplasma 77 31 3 1 2 2
genus Harryflintia 4 1
genus Hartmannibacter 1
genus Hathewaya 1807 817 17 7 3 7 4
genus Hazenella 26
genus Helcococcus 107 233 19 3
genus Helicobacter 518 44 3 28 9 2 1 4
genus Heliimonas 11
genus Heliobacterium 2 24 1 1 3 3 4
genus Heliomicrobium 1 1 1 4
genus Heliomonas 1 1
genus Heliophilum 39 2
genus Heliorestis 653 11 5 5 3
genus Heliothrix 1
genus Hellea 9
genus Henriciella 546 4
genus Hepatoplasma 1
genus Hephaestia 2
genus Herbaspirillum 676 75 250 4 13 2 3 3 4
genus Herbiconiux 2
genus Herbinix 507 4 6 2 6 4
genus Herminiimonas 54 195 4 2 3
genus Herpetosiphon 1 6
genus Hespellia 1353 500 15 1 10
genus Heyndrickxia 1 2
genus Hippea 7 1
genus Hirschia 15
genus Histophilus 22 1 1 1
genus Hoeflea 1
genus Holdemanella 895 687 19 2 4 5 6
genus Holdemania 1567 1166 566 28 23 6 20 9 7
genus Holophaga 13 2
genus Holospora 1
genus Holzapfelia 77
genus Homo 1
genus Hoppeia 1
genus Howardella 997 123 2 2 2
genus Hoyosella 50 2
genus Hugenholtzia 38 2
genus Humibacter 29 3
genus Hungateiclostridium 590 561 2 4 4 1 7 6
genus Hungatella 1321 33 15 32 8 10 7 7 4
genus Hwangdonia 21
genus Hydrocarboniphaga 1353 2 9
genus Hydrocoleum 19 1
genus Hydrogenibacillus 126 4 2 4
genus Hydrogenispora 638
genus Hydrogenoanaerobacterium 1127 224 2
genus Hydrogenobacter 13 3 1
genus Hydrogenobaculum 11 2 1 2 4
genus Hydrogenophaga 56 12 1 1 1 1 4
genus Hydrogenophilus 769 241 3 1 3 1
genus Hydrogenothermus 23
genus Hydrogenovibrio 33 27 1
genus Hydrotalea 23
genus Hylemonella 5
genus Hymenobacter 1094 63 1 4 1 4 4
genus Hyphomicrobium 220 26 4 1 4 4
genus Hyphomonas 97 17 2 3 3
genus Iamia 5
genus Ianmoorea 3
genus Ichthyobacterium 1
genus Ideonella 2
genus Idiomarina 70 21 1 1 4
genus Ignatzschineria 1 6
genus Ignavibacterium 38 51 1 2
genus Ignavigranum 118 2
genus Ihubacter 28 9
genus Ileibacterium 3
genus Ilumatobacter 162
genus Ilyobacter 4 2
genus