Bacteria reported by various 16s providers

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Critical Reading to understand the differences The Taxonomy Nightmare

Bacteria Reported on not 16s Tests

Rank	Bacteria	BiomeSight 1576 Samples	Thryve 1221 Samples	uBiome 815 Samples	CosmosId 38 Samples	SequentiaBiotech 36 Samples	custom 30 Samples	Microba 21 Samples	AmericanGut 18 Samples	BiomeSightRdp 15 Samples	es-xenogene 8 Samples	Medivere 7 Samples
biotype	Haemophilus influenzae aegyptius						1
biotype	Mycobacterium tuberculosis variant caprae	1
biotype	Mycobacterium tuberculosis variant pinnipedii	153
clade							1
clade										4
clade	50 kb inversion clade	430	11			2				1	1	3
clade	Amniota						1			4
clade	ant endosymbionts	384									4	6
clade	ant, tsetse, mealybug, aphid, etc. endosymbionts	396		1							4	6
clade	aphid secondary symbionts	20									1
clade	Archelosauria									2
clade	Archosauria									2
clade	asterids			18						4
clade	Bacteria candidate phyla			199	5		1				3
clade	Bacteroidetes/Chlorobi group	1571	1204	790	35	36	29	20	18	15	8	7
clade	Bilateria	340	8	11		1	1			5	4	1
clade	Boreoeutheria						1			3
clade	Caldiserica/Cryosericota group	1	7								1
clade	campanulids									4
clade	Candidatus Baumannia										1
clade	Candidatus Dependentiae										3
clade	Candidatus Uzinura										1
clade	Coelurosauria									2
clade	core chlorophytes									1
clade	core genistoids	431	11			2				1	1	3
clade	Cyanobacteria/Melainabacteria group	1472	832	31		18	8		7	9	4	7
clade	Deuterostomia	5					1			4	1
clade	Dicondylia	196	7	11		1				5	4	1
clade	Dinosauria									2
clade	Dipnotetrapodomorpha	5					1			4	1
clade	Ditrysia									2
clade	dothideomyceta						1
clade	Ecdysozoa	196	7	11		1				5	4	1
clade	Embryophyta	433	11	18		2				4	1	3
clade	eudicotyledons	433	11	18		2				4	1	3
clade	Eumetazoa	367	8	11		1	1			5	4	1
clade	Euphyllophyta	433	11	18		2				4	1	3
clade	Euteleostomi	5					1			4	1
clade	Eutheria						1			3
clade	fabids	430	11			2				1	1	3
clade	FCB group	1571	1204	790	35	36	29	21	18	15	8	7
clade	genistoids sensu lato	430	11			2				1	1	3
clade	Gnathostomata	5					1			4	1
clade	Gunneridae	433	11	18		2				4	1	3
clade	Heliantheae alliance									4
clade	lamiids			18
clade	leotiomyceta						1					1
clade	lice endosymbionts			1
clade	Lophotrochozoa	284	1							1	1
clade	Luna-1 subcluster		3	1							3
clade	Mandibulata	196	7	11		1				5	4	1
clade	mealybug secondary endosymbionts										1
clade	Mesangiospermae	433	11	18		2				4	1	3
clade	Metamonada			1
clade	Methanomada group	409	247	220	5	16	11	1	11	9	2	7
clade	Nitrospinae/Tectomicrobia group	4	5
clade	Obtectomera									2
clade	OM182 clade			1
clade	OMG group			1
clade	Opisthokonta	367	8	11		1	4		13	5	4	6
clade	Panarthropoda	196	7	11		1				5	4	1
clade	Pancrustacea	196	7	11		1				5	4	1
clade	Patescibacteria group										1
clade	Pentapetalae	433	11	18		2				4	1	3
clade	Protostomia	335	8	11		1				5	4	1
clade	PVC group	1440	1081	567	18	29	23	9	14	12	8	5
clade	Rhizaria						2			2
clade	rosids	430	11			2				1	1	3
clade	saccharomyceta						4					6
clade	Sar			2			2			2
clade	SAR116 cluster										1
clade	Sauria									2
clade	Saurischia									2
clade	Sauropsida									2
clade	sordariomyceta						1
clade	Spermatophyta	433	11	18		2				4	1	3
clade	Spiralia	284	1							1	1
clade	Stenosarchaea group	14	8	10			1				3
clade	Stramenopiles			2
clade	sulfur-oxidizing symbionts			1							1
clade	TACK group	21	5				1
clade	Teleostomi	5					1			4	1
clade	Terrabacteria group	1571	1204	792	35	36	29	21	18	15	8	7
clade	Tetrapoda	5					1			4	1
clade	Theria						1			3
clade	Theropoda									2
clade	Tracheophyta	433	11	18		2				4	1	3
clade	Vertebrata	5					1			4	1
class							1
class							1
class	Acidimicrobiia	192	428	2			3				1	3
class	Acidithiobacillia		39				1				1
class	Acidobacteriia	260	754	111			2			2	4	2
class	Actinomycetia	1560	1206	785	35	35	26	18	17	15	8	7
class	Agaricomycetes						1
class	algae						2			2
class	Alphaproteobacteria	1526	1184	437	4	32	8	14	7	15	7	7
class	Amphibia	5									1
class	Anaerolineae	655	270	9			1			5	4	7
class	Anthozoa	36									1
class	Aquificae	10	78				3			4	4
class	Archaeoglobi		1
class	Ardenticatenia		21				3				1
class	Armatimonadia		1
class	Aves									2
class	Bacilli	1572	1253	786	34	36	26	20	18	15	8	7
class	Bacteroidia	1572	1253	790	35	36	29	20	18	15	8	7
class	Balneolia	63	638			7	2			3
class	Betaproteobacteria	1565	1243	747	33	36	18	16	18	15	7	7
class	Bivalvia	212	1
class	Blastocatellia		142	1						1	3
class	Caldilineae	508	372				2			5	3	7
class	Caldisericia	1	7								1
class	Calditrichia	287	10								1	7
class	Candidatus Babeliae										3
class	Candidatus Brocadiia	12									1
class	Chitinispirillia		17							2
class	Chitinivibrionia		2
class	Chitinophagia	719	965	5	5		1		1	9	4	6
class	Chlamydiia	144	133				1			1	1	1
class	Chlorobia	1266	82	1			1			5	4	2
class	Chloroflexia	2	62	2		14	1				1
class	Chlorophyceae									1
class	Chrysiogenetes	268	18				1			1	1
class	Chthonomonadetes	5	123								3
class	Clostridia	1572	1253	792	35	36	29	20	18	15	8	7
class	Conoidasida						1
class	Coprothermobacteria	13	60	7
class	Coriobacteriia	1556	1247	786	35	36	13	14	18	15	8	7
class	Cytophagia	1513	1063	7		12	4			12	4	6
class	Deferribacteres	393	103	1			1			3	4	4
class	Dehalococcoidia	94	226	1	1		1			2	4
class	Deinococci	983	250	7		13	1			10	4	7
class	Deltaproteobacteria	1552	1204	646	21	33	24	14	14	15	8	7
class	Dictyoglomia		87		2						1
class	Dothideomycetes						1
class	Elusimicrobia	7	84	7		19			3	9	1	7
class	Endomicrobia										1
class	Epsilonproteobacteria	852	557	266	3	10	2		7	9	8	7
class	Erysipelotrichia	1569	1252	785	34	36	14	13	17	15	7	7
class	Eurotiomycetes						1					1
class	Fibrobacteria	116	267	186			2				1
class	Fimbriimonadia	2	44								1
class	Flavobacteriia	1369	647	458	3	12	7	1	2	8	4	7
class	Florideophyceae								10
class	Fusobacteriia	796	692	144	4	7	9	2	2	6	8	6
class	Gammaproteobacteria	1566	1251	720	33	36	19	18	18	15	8	7
class	Gastropoda	101	1								1
class	Gemmatimonadetes	8	49	1		15	1			8	1	7
class	Gloeobacteria		9				1			1	1
class	Halobacteria	4	1				1
class	Holophagae	733	666				2			6
class	Hydrogenophilalia	765	247	6			1			2		1
class	Ignavibacteria	37	802	2		16	2			6	4
class	Insecta	196	7	11		1				5	4	1
class	Ktedonobacteria	147	18				1			1		3
class	Lentisphaeria		306	283	4	6	3	1	5	6	1
class	Limnochordia		1								1
class	Magnoliopsida	433	11	18		2				4	1	3
class	Malgrandaviricetes									4
class	Mammalia						1			3
class	Methanobacteria	409	251	220	5	16	11	1	11	9	2	7
class	Methanococci						1
class	Methanomicrobia	10	7	10			1				3
class	Methylacidiphilae	12			1						1
class	Mollicutes	1505	1102	167	1	25	5		2	14	4	6
class	Negativicutes	1567	1253	792	35	34	20	18	17	15	8	7
class	Nitriliruptoria	909	74				3			1	1
class	Nitrososphaeria	14	1
class	Nitrospinia	4	5
class	Nitrospira	304	54	1			1				4	6
class	Oligoflexia	25	104	1	1		1			1	4	1
class	Oligosphaeria		45	1
class	Opitutae	926	447	96	1	1	2			5	4	4
class	Phycisphaerae		2				1				4
class	Pisoniviricetes				1
class	Planctomycetia	18	111	1			1				4
class	Rhodothermia	122	53							1
class	Rhynchonellata									1
class	Rubrobacteria	10	115				3			2	3
class	Saccharomycetes						4					6
class	Saprospiria	74	181								4
class	Solibacteres		31	1
class	Sordariomycetes						1
class	Spartobacteria	30	57
class	Sphingobacteriia	1569	643	18		26	5		4	13	4	7
class	Spirochaetia	678	206	16			4			6	8	1
class	Synergistia	1164	467	236	3	1	3	1	1	11	4	7
class	Thermoanaerobaculia		80
class	Thermococci	3	1				1
class	Thermodesulfobacteria	150	49							1	1	2
class	Thermodesulfovibrionia Umezawa et al. 2021	170	5
class	Thermoflexia		4
class	Thermoleophilia	20	103							1
class	Thermolithobacteria		55
class	Thermomicrobia		23							2	1
class	Thermoplasmata		36	36			1	1
class	Thermoprotei	7
class	Thermotogae	52	41				1				4	6
class	Tissierellia	1554	1201	512	10	14	5		8	15	8	7
class	Tremellomycetes						1		13
class	unclassified Cyanobacteria										1
class	Verrucomicrobiae	1342	1067	493	17	26	21	9	13	12	8	3
class	Vicinamibacteria										1
class	Zetaproteobacteria		34	1			1				1
cohort	Endopterygota									3	3
cohort	Paraneoptera	191	2	11						5	1
cohort	Polyneoptera	7	7			1						1
family		1
family	'Williamsiaceae'	2
family	Acanthopleuribacteraceae		58
family	Acaryochloridaceae		3
family	Acetobacteraceae	513	368	2	1	1	1			2	4	3
family	Acholeplasmataceae	1414	810	19		15	2			8	4	6
family	Acidaminococcaceae	1446	1150	565	24	22	10	13	13	11	7	7
family	Acidiferrobacteraceae		17								4
family	Acidimicrobiaceae	192	416				2				1	3
family	Acidithiobacillaceae		39				1				1
family	Acidobacteriaceae	259	197	87			1			2	4	2
family	Acidothermaceae		47								1
family	Actinomycetaceae	1255	1095	634	30	24	6	1	8	12	6	7
family	Actinopolymorphaceae	99	1								1
family	Actinopolysporaceae	325	209							4	1
family	Aerococcaceae	649	1021	80	2		3		1	10	4	7
family	Aeromonadaceae	351	251	7	1	4	1		3	1	4	2
family	Akkermansiaceae	1360	1116	811	30	36	23	16	18	10	8	4
family	Alcaligenaceae	1549	208	6		10	3		1	2	4	7
family	Alcanivoracaceae	193	21				1				1
family	Algiphilaceae		45
family	Alicyclobacillaceae	2	447			7	3			6	4
family	Alsobacteraceae		2
family	Alteromonadaceae	532	481				1	1	2	1	4
family	Amaranthaceae	4
family	Amoebophilaceae	1400	3				1				1	5
family	Anaerolineaceae	272	269	8			1			5	4
family	Anaeromyxobacteraceae	1	642		1		1				1
family	Anaeroplasmataceae	157	464	128		3	1		2	5		2
family	anamorphic Herpotrichiellaceae						1
family	Anaplasmataceae	402	28		1		1			2	4	2
family	Aphanizomenonaceae	1046	3							4	4	7
family	Aphanothecaceae		5				1				1
family	Aphididae	3								5
family	Aquificaceae	10	43				2			4	3
family	Archaeoglobaceae		1
family	Archangiaceae	59	93				1				1
family	Arcobacteraceae Waite et al. 2017	78	20	1			1				4	1
family	Ardenticatenaceae		21				3				1
family	Armatimonadaceae		1
family	Aspergillaceae						1					1
family	Asteraceae									4
family	Atopobiaceae	589	804	165	4	10	1			7	7	3
family	Aurantimonadaceae	19	16				1				1
family	Azonexaceae	135	23				1			1
family	Azospirillaceae	793	574	1		2	1	3		7	4	2
family	Babyloniidae	1
family	Bacillaceae	1448	945	232	3	31	5		12	14	8	7
family	Bacillales Family X. Incertae Sedis	1559	619				3			9		7
family	Bacillidae	7	6			1						1
family	bacterial virus						1
family	Bacteriovoracaceae	8	58	1	1						1
family	Bacteroidaceae	1572	1253	784	35	35	29	20	18	15	8	7
family	Balneatrichaceae		17
family	Balneicellaceae							13
family	Balneolaceae	64	634			1	2			3
family	Barnesiellaceae		1036	513	17	11	8	10	18	9	8
family	Bartonellaceae	46	15				1				4
family	Bdellovibrionaceae	17	10				1			1	1	1
family	Beijerinckiaceae	46	10								4
family	Bernardetiaceae		122				2				1
family	Beutenbergiaceae										1
family	Bifidobacteriaceae	1556	1250	812	34	36	27	19	18	15	8	7
family	Blastocatellaceae		18	1						1
family	Blastochloridaceae	5									1
family	Blastocystidae			2
family	Blattabacteriaceae						1				4
family	Bogoriellaceae	16	42					4
family	Borreliaceae	17	2				1				4
family	Boseaceae		7	1			1				4
family	Brachyspiraceae	24		13			1				4
family	Braconidae									1
family	Bradymonadaceae										1
family	Bradyrhizobiaceae	64	58	11			1		1	1	4	1
family	Breoghaniaceae										1
family	Brevibacteriaceae	132	117	60			1		1		8	7
family	Brevinemataceae		5							1
family	Brucellaceae	147	47	25		4	1		1	3	4
family	Bruguierivoracaceae Li et al. 2021	5	26				1				4
family	Bryobacteraceae		19				1
family	Budviciaceae		278				1	15		1	4
family	Burkholderiaceae	1396	406	27		17	3	1	3	13	4	7
family	Caedimonadaceae										1
family	Caldicoprobacteraceae		40	236
family	Caldilineaceae	509	370				2			5	3	7
family	Caldisericaceae		7								1
family	Calditrichaceae	287	10								1	7
family	Caliciviridae				1
family	Calotrichaceae	641	106				1				4	6
family	Campylobacteraceae	619	466	265	3	7	2		7	6	8	7
family	Candidatus Babeliaceae										3
family	Candidatus Brocadiaceae	12									1
family	Candidatus Competibacteraceae		177				2			1
family	Candidatus Desulfofervidaceae										1
family	Candidatus Methanomethylophilaceae			23
family	Candidatus Midichloriaceae			1							1
family	Candidatus Nanopelagicaceae						1				3
family	Candidatus Paracaedibacteraceae					1
family	Candidatus Scalinduaceae Lodha et al. 2021	12
family	Canidae									4
family	Cardiobacteriaceae	37	158	2			1				1
family	Carnobacteriaceae	990	725	325	13	5	5	1	3	9	4	7
family	Catabacteriaceae		192	99	1	1		1		8		6
family	Catalimonadaceae		51
family	Catenulisporaceae		3								4
family	Caulobacteraceae	707	173	9			1		4	6	4	1
family	Celerinatantimonadaceae		6
family	Cellulomonadaceae	114	118		4		1				4
family	Cellvibrionaceae	104	82				1				4
family	Cenarchaeaceae DeLong and Preston 1996	2
family	Cesiribacteraceae		47
family	Chamaesiphonaceae		5								3
family	Chelatococcaceae	4	3								1
family	Chitinispirillaceae		17							2
family	Chitinivibrionaceae		2
family	Chitinophagaceae	724	965	5	5		1		1	9	4	6
family	Chlamydiaceae	1	2				1				1
family	Chlorobiaceae	1266	82				1			5	4	2
family	Chloroflexaceae		2	2							1
family	Chlorogloeopsidaceae		12
family	Christensenellaceae		296	180	28	24	3	1	14	10	4	7
family	Chromatiaceae	1290	600	2		1	3			6	4	6
family	Chromobacteriaceae	211	109				1				4	1
family	Chroococcaceae	627	2								1	2
family	Chroococcidiopsidaceae	1					1				1
family	Chrysiogenaceae	272	18				1			1	1
family	Chthoniobacteraceae	30	12
family	Chthonomonadaceae	5	123								3
family	Clostridiaceae	1571	1253	788	35	36	20	17	17	15	8	7
family	Clostridiales Family XI. Incertae Sedis			217
family	Clostridiales Family XVI. Incertae Sedis	878	58				4			3	1	2
family	Clostridiales Family XVII. Incertae Sedis	55	141		1		1			7	4	2
family	Coccidae	159								3
family	Coelosphaeriaceae	33
family	Cohaesibacteraceae		1								1
family	Coleofasciculaceae	12	3
family	Colwelliaceae	4	186				1			2	4
family	Comamonadaceae	1392	231	111		3	2		9	7	4	6
family	Conexibacteraceae	6	8
family	Coprobacillaceae Verbarg et al. 2014	1552	949	393	30	5	5		11	8	2	7
family	Coprothermobacteraceae	13	60	7
family	Coriobacteriaceae	1560	1098	781	26	34	7		18	13	8	7
family	Corynebacteriaceae	802	699	445	13	8	2	2	7	12	8	1
family	Coxiellaceae	37	42	2			1				1	1
family	Crenotrichaceae	3
family	Criblamydiaceae		43
family	Crocinitomicaceae		28			3	1				1
family	Cryomorphaceae		104	1							1
family	Cryptococcaceae								13
family	Cryptosporangiaceae	1
family	Cryptosporidiidae						1
family	Cyanobacteriaceae	245	34									1
family	Cyanobacteriaceae	246	34									1
family	Cyanobiaceae Salazar et al., 2020	3	5	1			1				4
family	Cyanothecaceae										1
family	Cyclobacteriaceae		344				1				4
family	Cytophagaceae	1433	851	3		4	1			5	4	6
family	Debaryomycetaceae						1
family	Deferribacteraceae	395	116	1			1			3	4	4
family	Defluviitaleaceae		320	18		3	3			9
family	Dehalococcoidaceae	94	64		1		1			1	1
family	Deinococcaceae	739	168	6		1	1			3	4	4
family	Demequinaceae	12	74							1
family	Dermabacteraceae	292	89	55			1	1		1	4
family	Dermacoccaceae	13	32	2	1		1		1		1
family	Dermatophilaceae	1	9								1
family	Dermocarpellaceae										1
family	Desulfallaceae Watanabe et al. 2020	678	244				3			1	1	7
family	Desulfarculaceae		249								1
family	Desulfobacteraceae	364	705	2		2	7			7	6	2
family	Desulfobulbaceae	23	138			1	1				3
family	Desulfocapsaceae	15	17				1				3
family	Desulfohalobiaceae	278	76								3	7
family	Desulfomicrobiaceae	93	296				1			7	8
family	Desulfonatronaceae	289	46									2
family	Desulfovibrionaceae	1510	1100	646	21	32	20	14	14	15	8	7
family	Desulfurellaceae	5	12								4
family	Desulfurobacteriaceae		19								1
family	Desulfurococcaceae	1
family	Desulfuromonadaceae	772	116				3			3	7	5
family	Devosiaceae	491	73						1	2	4
family	Diapheromeridae		1
family	Dictyoglomaceae		87		2						1
family	Dientamoebidae			1
family	Dietziaceae	89	165	2				2			1
family	Dysgonomonadaceae	1258	771	46		4	7		2	7	4	7
family	Ectothiorhodospiraceae	1058	278	1			3			7	4	2
family	Edwardsiidae	36									1
family	Eggerthellaceae	1540	1219	774	35	35	13	14	14	15	8	7
family	Egibacteraceae										1
family	Egicoccaceae										1
family	Elioraeaceae		3
family	Elusimicrobiaceae	7	65	7					3	1	1
family	Emcibacteraceae		152
family	Endomicrobiaceae										1
family	Endozoicomonadaceae		6								1
family	Enterobacteriaceae	1508	760	593	30	32	17	18	17	15	8	7
family	Enterococcaceae	1443	437	140	29	28	7	6	11	11	8	4
family	Entomoplasmataceae	683	83				1			3	4	2
family	Eriococcidae		1	11
family	Erwiniaceae	389	391	176		4	2		11	1	4	2
family	Erysipelotrichaceae	1569	1252	785	34	36	13	13	17	14	7	7
family	Erythrobacteraceae	123	51	2			1		1		4
family	Eubacteriaceae	1562	1253	299	35	36	20	16	13	15	8	7
family	Eubacteriales Family XII. Incertae Sedis	429	685	18			6			8		6
family	Eubacteriales Family XIII. Incertae Sedis	1302	1162	656	19	31	4	1	12	15	4	7
family	Euzebyaceae	908	68				1			1	1
family	Fabaceae	430	11			2				1	1	3
family	Fastidiosibacteraceae		15
family	Faucheaceae								10
family	Ferrimonadaceae	13	43								1
family	Ferrovaceae		2
family	Fervidobacteriaceae	17	1				1				4	1
family	Fibrobacteraceae	116	251	140			2				1
family	Fimbriimonadaceae	2	44								1
family	Flammeovirgaceae	346	397	1			3			1	4
family	Flavobacteriaceae	1369	567	455	1	3	7		2	8	4	7
family	Flexibacteraceae		8	1		2				4
family	Fortieaceae		16
family	four o'clock family									1
family	Francisellaceae	70	81	2			2				4	1
family	Frankiaceae	2	6				1				4
family	Fulvivirgaceae	7	160				2			1	4
family	Fusobacteriaceae	728	593	121	4	7	8	2	2	4	8	6
family	Gaiellaceae		44				2
family	Gallionellaceae	199	29				1		2		1
family	Geminicoccaceae		56							2
family	Gemmataceae	9	15	1			1				1
family	Gemmatimonadaceae	8	33	1			1				1
family	Geobacteraceae	95	74				5				4	1
family	Geodermatophilaceae	19	119	1						1	4
family	Gloeobacteraceae		9				1			1	1
family	Gloeotrichiaceae	3
family	Glycomycetaceae	72	160							2	1	1
family	Gomontiellaceae		102							2	1
family	Gomphosphaeriaceae	34
family	Gordoniaceae	66	104	1			1				4
family	Gottschalkiaceae		161				4			3	6
family	Gracilibacteraceae		530	9		3	3			7
family	Granulosicoccaceae		84								1
family	great apes						1
family	Hafniaceae	82	58	14	2	2	4			1	3
family	Hahellaceae	177	215				2			1	3
family	Halanaerobiaceae	330	264	1			3			9	4	2
family	Halieaceae		69				1				1
family	Haliscomenobacteraceae	1	103								3
family	Haloarculaceae		1
family	Halobacteriaceae	4	1				1
family	Halobacteriaceae Clade I	1					1
family	Halobacteriovoraceae	7	36				1				4
family	Halobacteroidaceae	50	426				3			3	1	4
family	Haloferacaceae	1					1
family	Halomonadaceae	575	517		1	2	4			3	4	3
family	Haloplasmataceae		34	1						2
family	Halorubraceae	2
family	Halothiobacillaceae	18	121				2
family	Hapalosiphonaceae										1
family	Helicobacteraceae	450	50	3			1			2	8	1
family	Heliobacteriaceae	683	240			4	2	5		8	1	5
family	Herpetosiphonaceae	1	5
family	Hesperiidae									2
family	Heteroleibleiniaceae		14
family	Holophagaceae	733	621				2			5
family	Holosporaceae				1						3
family	Hungateiclostridiaceae	592	726	142	7	35	2	6		8	4	6
family	Hydrogenophilaceae	769	254	5			1			2		1
family	Hydrogenothermaceae		26							1	1
family	Hyellaceae										1
family	Hymenobacteraceae	1043	229	2			1			9	4	1
family	Hyphomicrobiaceae	716	120				1		1	2	4	5
family	Hyphomonadaceae	93	663	1			1			5	2	3
family	Iamiaceae		24
family	Icacinaceae									1
family	Ichthyobacteriaceae										1
family	Idiomarinaceae	63	31				1			1	1
family	Ignavibacteriaceae	37	49	1							1
family	Ilumatobacteraceae		116
family	Immundisolibacteraceae										3
family	Intrasporangiaceae	57	74				1				4
family	Isosphaeraceae	8	5	1							4
family	Jatrophihabitantaceae		6								1
family	Jiangellaceae	23	14								4	1
family	Jonesiaceae	38	115
family	Kaistiaceae	10	42							1
family	Kallotenuaceae		20
family	Kangiellaceae		41								1
family	Kiloniellaceae	357	501			5				2
family	Kineosporiaceae	18	83							1	1
family	Kofleriaceae	129	28								3
family	Kordiimonadaceae		171
family	Kosmotogaceae	12	14				1				1
family	Kribbellaceae	83	320									5
family	Ktedonobacteraceae		1
family	Kytococcaceae	1		2							1
family	Labilitrichaceae		39
family	Lachnospiraceae	1572	1253	791	35	36	29	20	18	15	8	7
family	Lacipirellulaceae		7
family	Lactobacillaceae	1528	1253	813	32	36	19	12	18	15	8	7
family	Laqueidae									1
family	Lawsonellaceae					1
family	Legionellaceae	1027	74	1			1			7	4	3
family	Lentisphaeraceae		4
family	Leptolyngbyaceae	348	3	1			1				4	2
family	Leptospiraceae	399	69				4			2	4
family	Leptotrichiaceae	181	222	38			2			2	4	1
family	Leuconostocaceae	1212	1134	102	3	9	1	5	2	8	4	6
family	Lewinellaceae	72	8
family	Limnochordaceae		1								1
family	Listeriaceae	1039	291	1	1		1		4	3	4	1
family	Litoricolaceae	101	39							1		3
family	Luteibaculaceae Bowman 2020		1
family	Magnetococcaceae		22				1				1
family	Maricaulaceae	11	34								1
family	Marinifilaceae		307				1			4	4
family	Marinilabiliaceae		619	1		7				6	1
family	Marinobacteraceae Liao et al. 2020	79	171				1	1			4
family	Mariprofundaceae		34	1			1				1
family	Marivirgaceae		2				2				1
family	Melioribacteraceae		794			16	2			6	4
family	Merismopediaceae					3
family	Mesoaciditogaceae		7
family	Methanobacteriaceae	409	246	220	5	3	11	1	11	6	2	1
family	Methanococcaceae						1				2
family	Methanocorpusculaceae	4	1	1
family	Methanomassiliicoccaceae		36	31			1	1
family	Methanoregulaceae		2
family	Methanosarcinaceae	7	3				1				3
family	Methanotrichaceae		1
family	Methylacidiphilaceae	12			1						1
family	Methylobacteriaceae	95	72	4			1				4
family	Methylococcaceae	9	231	1			3				4
family	Methylocystaceae	26	21				1				4
family	Methylophilaceae	675	295				1			1	1	2
family	Methylothermaceae		49
family	Microbacteriaceae	502	683	49			2		3	5	4	5
family	Microbulbiferaceae	7	1				1				4
family	Micrococcaceae	603	630	151	22	25	5		1	4	7	6
family	Microcoleaceae	343	364	1			1			1	4
family	Microcystaceae	6					2				1
family	Micromonosporaceae	466	294	1			1		1	3	4	6
family	Micropepsaceae		13
family	Microscillaceae		163								1
family	Microviridae									4		7
family	Mooreiaceae		10
family	Moraxellaceae	785	576	21	4	7	1	7	5	10	8	6
family	Morganellaceae	246	557	17	1	17	2	1	10	11	7	7
family	Moritellaceae	1	1				1				1
family	Motilibacteraceae		19
family	Muribaculaceae						2			1	4
family	Mycobacteriaceae	253	110	59	2		1			2	4	1
family	Mycoplasmataceae	1295	854	11		6	2			10	4	5
family	Mycoplasmoidaceae		48
family	Myoviridae						1
family	Myxococcaceae	1	4				1				4
family	Mzabimycetaceae		158
family	Nakamurellaceae		2							1	4
family	Nannocystaceae	101	27									1
family	Natranaerobiaceae		46								1
family	Nautiliaceae	3	37				1			2	1
family	Neisseriaceae	516	199	68	5	10	2	3	3	7	4	7
family	Neomegalonemataceae		25							1
family	Nitratiruptoraceae Waite et al. 2017		2								1
family	Nitriliruptoraceae	5	6				2
family	Nitrosomonadaceae	12	354	8		4	3			3	4
family	Nitrosopumilaceae	1	4				1
family	Nitrososphaeraceae	14	1
family	Nitrospinaceae	4	5
family	Nitrospiraceae	304	54	1			1				4	5
family	Nocardiaceae	175	18	21			1			2	4	1
family	Nocardioidaceae	219	460	1			2				4	6
family	Nocardiopsaceae		360				1		2	1	4
family	Nostocaceae	1337	5			2	1			4	4	7
family	Oceanospirillaceae	405	315				1		1		4
family	Odoribacteraceae	1466	1143	619	27	33	14	16	16	14	8	7
family	Oleiphilaceae										3
family	Oligoflexaceae		1
family	Oligosphaeraceae		45
family	Opitutaceae	15	52		1		1			1	4
family	Orbaceae		9				1				4
family	Ornithinimicrobiaceae	35	20				1				4
family	Oscillatoriaceae	719	132								4
family	Oscillospiraceae	1568	1253	788	35	36	29	19	18	15	8	7
family	Oxalobacteraceae	984	534	258	4	25	3		8	10	7	7
family	Paenibacillaceae	1252	1075	1		29	4		6	9	4	7
family	Paludibacteraceae	5	144	1		3	2		2	1	4
family	Parachlamydiaceae	2	3								1
family	Parvibaculaceae		2								4
family	Parvoviridae									2
family	Parvularculaceae		32								1
family	Pasteurellaceae	1271	1008	548	19	29	6	7	17	10	4	7
family	Pasteuriaceae	69
family	Patulibacteraceae	1	6
family	Pectobacteriaceae	74	488	2		1	1			1	4	3
family	Pelagibacteraceae		4				1				1
family	Peptococcaceae	1548	1166	520	4	24	6		9	13	8	7
family	Peptoniphilaceae	1523	1163	505	9	7	4		8	15	8	7
family	Peptostreptococcaceae	1378	1248	789	33	30	11	8	15	13	7	7
family	Perlucidibacaceae Liao et al. 2020		3
family	Persicobacteraceae	1	86							1	4
family	Petrotogaceae	19	21				1				4	6
family	phages with long non-contractile tails						1
family	Phreatobacteraceae		1								1
family	Phycisphaeraceae		2								1
family	Phyllobacteriaceae	31	39	35			1		1		4
family	Pirellulaceae Dedysh et al. 2020	3	43								1
family	Piscirickettsiaceae	198	354	2			3		1		4
family	Planctomycetaceae	8	104				1				1
family	Planococcaceae	784	1028	39		22	2		6	15	6	7
family	Pleioneaceae		4
family	Pleomorphomonadaceae	5	7								1
family	Polyangiaceae	59	3	1			1			1	4
family	Porphyromonadaceae	1561	1240	524	22	35	6	2	10	15	7	7
family	Porticoccaceae		2
family	Prevotellaceae	1545	1243	568	16	21	27	3	17	15	8	7
family	Prochloraceae	2	2				1				4
family	Prochlorococcaceae			1
family	Prochlorotrichaceae		5								3
family	Prolixibacteraceae		171				1			4	1
family	Promicromonosporaceae	3	57					2	1		4
family	Propionibacteriaceae	61	523	118	9	13	1			4	6	4
family	Proteidae	5									1
family	Proteinivoraceae	1222	513				7			8		7
family	Pseudanabaenaceae	445	6							2	4	2
family	Pseudoalteromonadaceae	35	47				1				4	1
family	Pseudococcidae	37	2								1
family	Pseudomonadaceae	463	460	51	2	9	5		11	4	8	5
family	Pseudonocardiaceae	434	387				1			3	4	4
family	Pseudoxanthobacteraceae		5
family	Psychromonadaceae	17	39								4
family	Puniceicoccaceae	921	424	7			1			5	1	4
family	Pyrinomonadaceae		44
family	Rarobacteraceae		58
family	Reichenbachiellaceae		43
family	Reyranellaceae		5
family	Rhabdochlamydiaceae	132
family	Rhizobiaceae	396	95	8		14	1		1	2	4	7
family	Rhodanobacteraceae	1074	232				1			3	4	3
family	Rhodobacteraceae	316	306	4	1	4	1		1	4	4	7
family	Rhodobiaceae	4	11	3							4
family	Rhodocyclaceae	943	398	70			1		1	1	1
family	Rhodospirillaceae	1267	925	370		25	5	14		13	4	7
family	Rhodothalassiaceae	14	14							1
family	Rhodothermaceae	1444	168			6	2			7	4	1
family	Rhodovibrionaceae	327	448			1				8
family	Rickettsiaceae	801	237				1			4	4	6
family	Rikenellaceae	38	1223	733	34	35	23	18	18	10	8	7
family	Rivulariaceae	694	107								4	6
family	Robiginitomaculaceae		48							2
family	Roseiarcaceae		4
family	Roseiflexaceae	1	11								1
family	Roseivirgaceae		46
family	Roseobacteraceae Pujalte et al. 2014	87	65	1			1				4	2
family	Ruaniaceae						1
family	Rubricoccaceae		9
family	Rubritaleaceae	521	176					5		2
family	Rubrobacteraceae	10	79				3			2	3
family	Ruminococcaceae	1572	1253	788	28	36	6	20	18	15	4	7
family	Saccharomycetaceae						4					5
family	Saccharospirillaceae	40	462							1	1
family	Salinibacteraceae		2
family	Salinisphaeraceae		17								1
family	Salinivirgaceae										1
family	Salisaetaceae	292	138				1			4
family	Sandaracinaceae		11								1
family	Sanguibacteraceae	4	3								1	1
family	Saprospiraceae	74	62								1
family	Schleiferiaceae		20								1
family	Scolopacidae									3
family	Scytonemataceae		3								4
family	Sedimentisphaeraceae						1				3
family	Segniliparaceae		37				2				1
family	Selenomonadaceae	1545	717	99	5	12	8	1		15	8	7
family	Shewanellaceae	982	162				2			3	8	5
family	Simkaniaceae		11								1
family	Sinobacteraceae	1137	156	2			1			3	1
family	Sneathiellaceae		11
family	Solanaceae			11
family	Solibacteraceae	1		1							1
family	Solirubrobacteraceae	12	22
family	Sphaerobacteraceae		32							1
family	Sphaerochaetaceae	3	2				1				1
family	Sphingobacteriaceae	1567	643	4		24	5		4	13	4	7
family	Sphingomonadaceae	567	666	17		14	2		1	7	4	6
family	Sphingosinicellaceae		10							1	4
family	Spirillaceae		4			14
family	Spirochaetaceae	382	132				1			3	4	1
family	Spiroplasmataceae		436				1			6	4
family	Spirosomaceae	1244	691			2	3			4	4	6
family	Spirulinaceae		11
family	Spongiibacteraceae		192							1	1
family	Sporichthyaceae	6	22
family	Sporolactobacillaceae	468	172				2				1	1
family	Sporomusaceae	1030	846	34			3			5	4	7
family	Staphylinidae									2	3
family	Staphylococcaceae	1209	378	207	3	3	6	5	5	8	8	5
family	Stappiaceae		4				1				4
family	Stellaceae		211							1
family	Steroidobacteraceae	16	33
family	Sterolibacteriaceae	238	63	11			1				4
family	Streptococcaceae	1560	1250	774	34	36	16	16	16	15	8	7
family	Streptomycetaceae	299	259			2	1		2		8	6
family	Streptosporangiaceae	621	185				1			1	1	2
family	Succinivibrionaceae	425	290	15	2		1		3		2
family	Sulfolobaceae	5
family	Sulfuricellaceae Watanabe et al. 2014		6				1				1
family	Sulfurovaceae Waite et al. 2017		5				1				1
family	Sutterellaceae	1545	1226	713	31	36	17	15	18	15	3	7
family	Symbiobacteriaceae	952	319				3			7	3
family	Synechococcaceae	447	9	1			1				4
family	Synergistaceae	1155	467	236	3	1	3	1	1	10	4	7
family	Syntrophaceae	209	63				1			1	4	1
family	Syntrophobacteraceae	472	435				2			2	1	2
family	Syntrophomonadaceae	1296	564	11			3			4	4	5
family	Syntrophorhabdaceae		37	1
family	Syntrophotaleaceae	13
family	Tannerellaceae	1551	1180	719	35	34	19	17	18	15	8	7
family	Temperatibacteraceae		1
family	Tepidamorphaceae		6
family	Tepidanaerobacteraceae	525	13				1				1	2
family	Terasakiellaceae										1
family	Terrimicrobiaceae		4
family	Thalassobaculaceae	72	3							2
family	Thalassospiraceae	356	37	358						3	1
family	Thermaceae	550	92	1			1			2	4	5
family	Thermoactinomycetaceae	991	622	1			4			4	4	6
family	Thermoanaerobacteraceae	1346	359	212			4			10	4	4
family	Thermoanaerobacterales Family III. Incertae Sedis	1512	197			1	4			12	7	7
family	Thermoanaerobacterales Family IV. Incertae Sedis		39				1
family	Thermoanaerobaculaceae		80
family	Thermococcaceae	3	1				1
family	Thermodesulfobacteriaceae	150	49							1	1	2
family	Thermodesulfobiaceae	14	79	17		5	2			2	1
family	Thermodesulfovibrionaceae	297	18								3	6
family	Thermoflexaceae		4
family	Thermoflexibacteraceae		109
family	Thermogemmatisporaceae	147	7							1		3
family	Thermoguttaceae Dedysh et al. 2020		39								1
family	Thermohalobacteraceae Spring 2020		941			4	4			8
family	Thermoleophilaceae		48							1
family	Thermolithobacteraceae		55
family	Thermomicrobiaceae										1
family	Thermomonosporaceae	475	70				1			2	4	3
family	Thermonemataceae		30							4
family	Thermoproteaceae	1
family	Thermosediminibacteraceae	103	65								1	6
family	Thermosporotrichaceae		11
family	Thermosynechococcaceae										1
family	Thermotogaceae	53	1				1				4	6
family	Thermotomaculaceae		15							1
family	Thioalkalibacteraceae	10	1
family	Thioalkalispiraceae		54	1							3
family	Thiobacillaceae	265	63	6							1	1
family	Thiofilaceae		3
family	Thiolinaceae		2
family	Thioprofundaceae		7
family	Thiotrichaceae	1052	77	1					3	5	1	3
family	Thiovulaceae Waite et al. 2017	9	12				1				3
family	Thorselliaceae		58
family	Tissierellaceae	93	562	1	1	2	4			5	7	3
family	Treponemataceae	381	59				1			5	8	1
family	Trichocoleusaceae		2
family	Trichocomaceae											1
family	Tropherymataceae		68								1
family	Trueperaceae		20
family	Tsukamurellaceae	89	6								4	1
family	Turicibacteraceae Verbarg et al. 2014	1053	751	474	16	8	6	2	11	11	4	5
family	unclassified Actinobacteria (class) (miscellaneous)										1
family	unclassified Bacillales		19	40
family	unclassified Burkholderiales	200	198	18	15				3		4	3
family	unclassified Clostridiales		719	783	32	35	5	3	1	8	4
family	unclassified Rickettsiales										4
family	Unionidae	213	1
family	Vallitaleaceae Quemeneur et al.		75			3	4			9
family	Veillonellaceae	1571	1246	744	30	32	14	8	16	12	8	7
family	Verrucomicrobia subdivision 3	14	27				2
family	Verrucomicrobiaceae	1339	227	220			3		1	2	1	3
family	Vibrionaceae	95	111				3				4	4
family	Vicinamibacteraceae										1
family	Victivallaceae		301	283	4	6	2		5	6
family	Viviparidae	100	1								1
family	Waddliaceae	10	1
family	Weeksellaceae	80	101	8			1		1	1	4
family	Wenzhouxiangellaceae		42								1
family	Woeseiaceae										1
family	Xanthobacteraceae	26	20				1				1	6
family	Xanthomonadaceae	1281	318	19			4		7	9	4	6
family	Xenococcaceae	1
family	Yersiniaceae	1183	203	20	2	6	7		13	10	7
family	Zoogloeaceae	375	150	1		1	1		2	1	4	3
family	Zymomonadaceae	1	1								4
forma specialis	Buchnera aphidicola (Acyrthosiphon kondoi)										1
forma specialis	Buchnera aphidicola (Acyrthosiphon pisum)										2
forma specialis	Buchnera aphidicola (Aphis glycines)										1
forma specialis	Buchnera aphidicola (Cinara cedri)										1
forma specialis	Buchnera aphidicola (Cinara confinis)										1
forma specialis	Buchnera aphidicola (Cinara pseudotaxifoliae)										1
forma specialis	Buchnera aphidicola (Cinara tujafilina)										1
forma specialis	Buchnera aphidicola (Diuraphis noxia)										1
forma specialis	Buchnera aphidicola (Myzus persicae)										4
forma specialis	Buchnera aphidicola (Schizaphis graminum)										1
forma specialis	Buchnera aphidicola (Schlechtendalia chinensis)										1
forma specialis	Buchnera aphidicola (Tuberolachnus salignus)										1
forma specialis	Buchnera aphidicola (Uroleucon ambrosiae)										1
forma specialis	cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake Yunoko										1
forma specialis	endosymbiont of Bathymodiolus septemdierum str. Myojin knoll										1
forma specialis	primary endosymbiont of Heteropsylla cubana										1
forma specialis	Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis										1
forma specialis	Wigglesworthia glossinidia endosymbiont of Glossina morsitans										4
forma specialis	Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)										3
genus							1
genus							1
genus							1
genus							1
genus							1
genus	'Grimontella'							1
genus	'Haloanella'	2
genus	'Kouleothrix'	1
genus	'Terrahaemophilus'						1
genus	Abiotrophia	93	143	9	2		2			2
genus	Absiella	397	446		12		1			6		1
genus	Abyssivirga						1
genus	Acanthopleuribacter		58
genus	Acaryochloris		3
genus	Accumulibacter										3
genus	Acetanaerobacterium		605	123		1	3			9
genus	Acetatifactor		1137	2	1		3			4
genus	Acetilactobacillus										3
genus	Acetitomaculum		865	138		1	3			3
genus	Acetivibrio	1543	1156	32	2	26	9			9	4	7
genus	Acetoanaerobium		636				4			7	1
genus	Acetobacter	15	19		1		1				3
genus	Acetobacterium	1539	546		2		4			11	4	7
genus	Acetobacteroides		297
genus	Acetohalobium	40	3				1				1
genus	Acetomicrobium	14	48								1
genus	Acetonema		288				2			2
genus	Acholeplasma	1078	809	6		1	2			6	4	3
genus	Achromatium	11
genus	Achromobacter	130		1		9	1			1	4	2
genus	Acidaminobacter	375	385				3			6		3
genus	Acidaminococcus	1090	633	96	1	4	5	1	5	5	6	3
genus	Acidianus	1
genus	Acidibacter		47
genus	Acidibrevibacterium										1
genus	Acidicaldus		2
genus	Acidicapsa		66							1
genus	Acidiferrobacter		11								3
genus	Acidihalobacter						1				1
genus	Acidimicrobium	169									1	1
genus	Acidiphilium	37	16								1	1
genus	Acidipropionibacterium	21		1			1				6
genus	Acidisoma	2
genus	Acidisphaera	1									1
genus	Aciditerrimonas		180				2
genus	Acidithiobacillus		39				1				1
genus	Acidobacterium	1									3
genus	Acidocella	2	1
genus	Acidothermus		47								1
genus	Acidovorax	88	42	1			1		1	1	4	4
genus	Acinetobacter	345	313	16	4	6	1	7	5	1	8	4
genus	Acrocarpospora		4
genus	Actibacter		1
genus	Actimicrobium		3
genus	Actinoallomurus	2
genus	Actinoalloteichus		1								4
genus	Actinobacillus	883	296	90		7	4			2	4	5
genus	Actinobaculum	124	8	17	7				2		1
genus	Actinocatenispora	406	121							2
genus	Actinocorallia	3	4									2
genus	Actinokineospora	4										3
genus	Actinomadura	45	42				1				1	2
genus	Actinomyces	1155	988	579	29	10	5		5	10	4	7
genus	Actinomycetospora	9	2
genus	Actinoplanes	15	116				1				4
genus	Actinopolymorpha	99	1								1
genus	Actinopolyspora	325	206							4	1
genus	Actinosynnema										1
genus	Actinotalea	1
genus	Actinotignum	27	66	29						3
genus	Acutalibacter									9
genus	Adhaeribacter		32
genus	Adlercreutzia	1139		537	26	5	6	1	6	5	5	6
genus	Advenella		5				1				3
genus	Aequorivita	1	9			2					1
genus	Aeribacillus		31							1	1
genus	Aeriscardovia		183
genus	Aerococcus	26	361	16			1			2	4
genus	Aeromicrobium	12	3	1							1	3
genus	Aeromonas		152	7	1	4	1				4
genus	Aerophilus									1
genus	Aerosphaera			48
genus	Aerosticca Watanabe et al. 2020										3
genus	Aestuariibacter		2
genus	Aestuariicola	1
genus	Aestuariispira		514			2
genus	Afifella	1
genus	Afipia	4		1							3
genus	Agaribacter		303
genus	Agarilytica										1
genus	Agarivorans		22								1
genus	Agathobacter						1		1
genus	Agathobaculum		1174	1	30	8	4			10
genus	Aggregatibacter	416	227	172	3	2	2		1	8	1	5
genus	Aggregicoccus		1
genus	Agreia		2
genus	Agrilactobacillus		150							3
genus	Agrobacterium	68					1				4
genus	Agrococcus	29	2	3						1	1
genus	Agromyces	254	118				1			2	1	1
genus	Ahniella										1
genus	Ahrensia		1
genus	Akkermansia	1364	1116	811	30	36	23	16	18	10	8	4
genus	Albibacterium		1
genus	Albidovulum		1	1
genus	Albimonas		6
genus	Alcaligenes		13	2			1				3
genus	Alcanivorax	193	11				1				1
genus	Algibacter	1	3								1
genus	Algicola		45
genus	Algimonas		17							2
genus	Algiphilus		45
genus	Algivirga		1
genus	Algorimarina		1
genus	Algoriphagus		119				1				3
genus	Aliarcobacter	52	3	1							4	1
genus	Alicycliphilus	11	1						3		1
genus	Alicyclobacillus	2	170			3	3			4	3
genus	Aliicoccus		2
genus	Aliidiomarina		18
genus	Aliifodinibius		208
genus	Aliihoeflea		1
genus	Aliivibrio						1				1
genus	Alishewanella	276	56						2
genus	Alistipes		1222	733	34	33	21	18	11	10	8	7
genus	Alkalibacillus	108	5
genus	Alkalibacter		121				2			3
genus	Alkalibacterium	512	5			1	1			1		7
genus	Alkalibaculum		241				1			2
genus	Alkalicoccus		44
genus	Alkaliflexus		51							3
genus	Alkalihalobacillus	20	29	8			1				3
genus	Alkalilimnicola										1
genus	Alkalimarinus		16
genus	Alkaliphilus	1534	346			4	7			10	4	7
genus	Alkalispirillum			1
genus	Alkalispirochaeta		1
genus	Alkalitalea										1
genus	Alkanibacter		1
genus	Alkanindiges	2	3
genus	Allisonella		232	68	2	3
genus	Alloactinosynnema										4
genus	Allobacillus									2
genus	Allobaculum	113	177	8	2					2
genus	Allocatelliglobosispora		2
genus	Allochromatium	75									1
genus	Allofrancisella		6								1
genus	Allofustis		30	2			2
genus	Allohahella	175	87				2
genus	Alloiococcus	4	92	1
genus	Allokutzneria		1								1
genus	Alloprevotella	12	457	83		2	3			1		1
genus	Alloscardovia	94	185	19	2
genus	Allosphingosinicella		15
genus	Alsobacter		2
genus	Alteracholeplasma	25	48				1				1	1
genus	Altererythrobacter		20	2			1				4
genus	Alteribacillus		3
genus	Alteribacter		14
genus	Alterileibacterium					2				6
genus	Alterococcus		33							1
genus	Alteromonas		26				1				4
genus	Altibacter		1
genus	Alysiella		4
genus	Amaricoccus	54	3									2
genus	Amedibacillus	1008	392		12		1	1		6		2
genus	Aminicella		715							1
genus	Aminiphilus	144	5									5
genus	Aminipila				1		1				4
genus	Aminivibrio		70
genus	Aminobacter	10	1								1
genus	Aminobacterium	54	17							4	1
genus	Aminomonas		57								4
genus	Ammonifex	543	7							1
genus	Ammoniphilus	54	40
genus	Amoebophilus	1400	3				1				1	5
genus	Amphibacillus		31								4
genus	Amphritea	41	4
genus	Amycolatopsis	21	4				1				4	1
genus	Amylibacter		3
genus	Amylolactobacillus									2
genus	Anabaena		2								3
genus	Anabaenopsis										1
genus	Anaerobacillus	353	2	20
genus	Anaerobacter			59
genus	Anaerobacterium		43	47		3	1			4
genus	Anaerobiospirillum	12	31		2
genus	Anaerobium		361			19	1			9
genus	Anaerobranca	1226	491				5			6		7
genus	Anaerobutyricum		1133	1	30	32	6	14		9	6
genus	Anaerocella		173
genus	Anaerococcus	730	690	373	1	5	1		5	9	4
genus	Anaerocolumna		1013			8	4			5	1
genus	Anaerofilum	1550	651	249	5	8	2			15		7
genus	Anaerofustis	303	781	203	9		1			6
genus	Anaeroglobus		626	14						6
genus	Anaerolinea	114	85	4			1			2	1
genus	Anaeromassilibacillus				8	9	1	1
genus	Anaeromusa	151	26							2
genus	Anaeromyxobacter	1	642		1		1				1
genus	Anaerophaga		14							1
genus	Anaeroplasma	157	184	48		1				2		2
genus	Anaerorhabdus		25
genus	Anaerosacchariphilus		1			13
genus	Anaerosalibacter		261
genus	Anaerosinus		37	34						2
genus	Anaerosphaera		133							2
genus	Anaerospora	3	204
genus	Anaerosporobacter		688	550	1	5	1
genus	Anaerostipes	1382	1250	780	35	36	16	18	12	15	8	7
genus	Anaerotaenia					3	1
genus	Anaerotignum		1142		7	21	5	4		10	4
genus	Anaerotruncus	1518	1015	730	22	29	10	1	7	11		7
genus	Anaerovibrio	1401	12	9	1		3			9		1
genus	Anaerovorax		61	276		13	1			3
genus	Anaplasma		10								1
genus	Ancylobacter	7
genus	Anderseniella		1								4
genus	Andreesenia		9
genus	Andreprevotia		1
genus	Aneurinibacillus	5	60				1				1
genus	Angelakisella				7	21
genus	Annandia										2
genus	Annwoodia		1
genus	Anoxybacillus	133	48	3			1		1	1	1	1
genus	Anoxybacter						1			1	4
genus	Anoxynatronum		750							3
genus	Anseongella						1
genus	Antarctobacter										1
genus	Apibacter						1				1
genus	Apilactobacillus		11								3
genus	Aquabacterium	7	61	5						1	1
genus	Aquamicrobium		14
genus	Aquaspirillum		34
genus	Aquibacter		7	1
genus	Aquicella		9
genus	Aquiflexum		11								1
genus	Aquihabitans		19
genus	Aquiluna		2
genus	Aquimarina	5	29				1				4
genus	Aquimonas	7	18
genus	Aquincola		9
genus	Aquipuribacter		5
genus	Aquirhabdus										1
genus	Aquisalibacillus		3
genus	Aquisalimonas		69
genus	Aquisphaera		2
genus	Aquitalea	16	2				1				4
genus	Arabia		1			1	1
genus	Arachidicoccus						1				3
genus	Arachnia	1		1	2		1
genus	Arcanobacterium	59	32	31		1	1					2
genus	Archaeoglobus		1
genus	Archangium		12								1
genus	Arcicella		106							2
genus	Arcobacter	78	20	1			1				4	1
genus	Arcobacter group	54	18	1			1				4	1
genus	Arcticibacterium										1
genus	Ardenticatena		21				2
genus	Arenibacter	4	1								3
genus	Arenimonas	5	35
genus	Arhodomonas		13
genus	Aridibacter		18
genus	Armatimonas		1
genus	Aromatoleum										1
genus	Arsenicicoccus		4								1
genus	Arsenophonus	33	32								1
genus	Arthrobacter	187	7	10		1	1			2	4	1
genus	Arthromitus						1				4
genus	Arthronema	8	1
genus	Arthrospira	18	4	1							1
genus	Asaccharobacter			11	1							7
genus	Asaccharospora			99			1
genus	Asaia		4								1
genus	Asinibacterium		10
genus	Aspergillus						1					1
genus	Asteroleplasma		335	73		1				3
genus	Asticcacaulis	573	65							2	1	1
genus	Atelocyanobacterium										1
genus	Atlantibacter										1
genus	Atopobacter		7
genus	Atopobium	541	430	98	3	3				4	1	3
genus	Atopococcus		22
genus	Atopomonas		6
genus	Atopostipes		82				2
genus	Aurantiacibacter		9								1
genus	Aurantimicrobium										1
genus	Aurantimonas	17
genus	Auraticoccus		3								3
genus	Aureibacter		5
genus	Aureicoccus		1
genus	Aureimonas		12								1
genus	Aureispira		1
genus	Aureitalea										3
genus	Auricoccus										1
genus	Auritidibacter										1
genus	Austwickia										1
genus	Avibacterium	173	77				2				1	4
genus	Azoarcus	92	4			1	1				1
genus	Azohydromonas	10	2
genus	Azomonas	4
genus	Azonexus		21							1
genus	Azorhizobium	6	2
genus	Azorhizophilus	3
genus	Azospira	10	5	9			1				1
genus	Azospirillum	310	358			2	1	3		7	4	2
genus	Azotobacter		4								1
genus	Babela										2
genus	Bacillus	7	6			1						1
genus	Bacillus	1055	544	66	1	27	2		8	11	8	6
genus	Bacteria		1
genus	Bacterioplanes		1								1
genus	Bacteriovorax	8	47		1
genus	Bacteroides	1572	1253	784	35	35	28	20	18	15	8	7
genus	Baia		99
genus	Balneatrix		17
genus	Balneola	64	253
genus	Bariatricus				1					3
genus	Barnesiella		970	412	14	4	7	9	2	9	8
genus	Barrientosiimonas		30
genus	Bartonella	46	15				1				4
genus	Basfia		7				1				1
genus	Basilea		4								1
genus	Bdellovibrio	17	10				1			1	1	1
genus	Beduini					1	1
genus	Beggiatoa	3	1								1
genus	Beijerinckia	2									1
genus	Belliella		20								3
genus	Bellilinea	5	1
genus	Belnapia		4	1
genus	Bergeyella	25		5
genus	Bermanella		1
genus	Bernardetia		94								1
genus	Berryella Wylensek et al. 2020				3		1				1
genus	Beutenbergia										1
genus	Bibersteinia	4					1				1
genus	Bifidobacterium	1556	1246	812	34	36	27	15	18	15	8	6
genus	Bigelowiella						2			2
genus	Bilophila	1417	4	605	21	32	19	13	14	14	1	7
genus	Biomaibacter										1
genus	Biostraticola		26
genus	Bisgaardia		92				1
genus	Bittarella				8	8	2
genus	Bizionia	2	2
genus	Blastocatella			1
genus	Blastochloris	5									1
genus	Blastococcus	10	1	1							1
genus	Blastocystis			2
genus	Blastomonas	9									1
genus	Blastopirellula		17
genus	Blattabacterium						1				4
genus	Blautia	1572	1253	789	34	36	27	20	18	15	8	7
genus	Blochmannia	385									4	6
genus	Bogoriella		11
genus	Bombilactobacillus		125
genus	Bombiscardovia		15					15
genus	Bordetella		47				1				4
genus	Borrelia	17	2								4
genus	Borreliella										4
genus	Bosea		7	1			1				4
genus	Bosea	4
genus	Boseongicola		2
genus	Boudabousia		18
genus	Bounagaea									1
genus	Bowdeniella		21
genus	Bowmanella		62
genus	Brachybacterium	262	26	5			1			1	1
genus	Brachymonas		3
genus	Brachyspira	24		13			1				4
genus	Brackiella		16
genus	Bradymonas										1
genus	Bradyrhizobium	41	2	10			1				4	1
genus	Brassicibacter		838			4	3			5
genus	Brenneria	55	437				1				1	3
genus	Breoghania										1
genus	Brevefilum										1
genus	Brevibacillus	142	96			1	1		1		4
genus	Brevibacterium	132	115	60			1		1		8	7
genus	Brevifollis		21
genus	Brevinema		5							1
genus	Brevirhabdus										1
genus	Brevundimonas	35	44	7			1		3	2	4
genus	Breznakia									3
genus	Breznakibacter		17							2
genus	Brochothrix	931	40				1			1	1	1
genus	Brockia		26
genus	Brucella	14	1	4						1	2
genus	Bryobacter		19
genus	Buchnera						1				4
genus	Bulleidia	297	67	2						2		5
genus	Burkholderia	449	35	1		11	1		1		4	5
genus	Buttiauxella		138								1
genus	Butyribacter				2			1	1
genus	Butyricicoccus		738	77	31	34	5	16	1	8
genus	Butyricimonas	1210	987	455	14	29	11	9	15	12	5	7
genus	Butyrivibrio	1025	1221	416	29	28	17		3	9	8	7
genus	Bythopirellula		7
genus	Caballeronia		24								4
genus	Caedibacter		3
genus	Caenispirillum		25
genus	Caldalkalibacillus		146							2
genus	Caldanaerobacter	64	110	1						1	1
genus	Caldanaerobius		45							3
genus	Caldanaerovirga		5
genus	Caldibacillus	1								1	3
genus	Caldicellulosiruptor	1427	94			1	4			12	4	6
genus	Caldicoprobacter		40	119
genus	Caldilinea	509	9								3	7
genus	Caldimicrobium		2								1
genus	Caldimonas		24
genus	Caldinitratiruptor		307							7
genus	Caldisalinibacter		539							2
genus	Caldisericum		7								1
genus	Calditerricola		2
genus	Calditerrivibrio		3							1	1
genus	Caldithrix	287	10								1	7
genus	Calochaete		16
genus	Caloramator	1536	827	1	2	9	9			12		7
genus	Caloranaerobacter						2			7
genus	Caloribacterium		13
genus	Calothrix	642	106								4	6
genus	Camelimonas		3
genus	Caminibacter	1	3							2
genus	Caminicella	23	771							3
genus	Campylobacter	572	451	263	3	7	2		7	6	8	7
genus	Candidatus Azobacteroides	80									4
genus	Candidatus Desulforudis						1
genus	Candidatus Methanoregula Brauer et al. 2006		1
genus	Candidatus Nitrosoglobus										1
genus	Candidatus Tenderia Eddie et al. 2016						1
genus	Candidatus Velamenicoccus Kizina et al. 2022										1
genus	Candidatus Viadribacter Braun and Szewzyk 2016										4
genus	Candidatus Walczuchella										1
genus	Candidimonas		1
genus	Canicola		79
genus	Canis									4
genus	Capnocytophaga	19	14	2			1			1	4	1
genus	Caproiciproducens		1			29	1			9	4
genus	Carboxydocella	878	58				4			3	1	2
genus	Carboxydothermus		25								4
genus	Carboxylicivirga		286			1				1
genus	Cardinium										1
genus	Cardiobacterium	37	121	2			1
genus	Carnimonas		19
genus	Carnobacterium	63	5	8			1	1			4	2
genus	Carsonella										1
genus	Casaltella		796			3				6
genus	Castellaniella										1
genus	Catabacter		192	98	1			1		8		6
genus	Catellatispora	1
genus	Catellicoccus		1
genus	Catenibacterium	482	390	292	14		2		8	4		2
genus	Catenisphaera		86			1	2
genus	Catenovulum		1								1
genus	Catenulispora		3								4
genus	Catonella	1014	1217	1	1	16	3			6		4
genus	Caulobacter	10	16	1			1				4
genus	Cecembia		17
genus	Cedecea		101				1
genus	Celeribacter										3
genus	Celerinatantimonas		6
genus	Cellulomonas	27	118		4		1				4
genus	Cellulophaga		4				2				4
genus	Cellulosibacter		155
genus	Cellulosilyticum		1156	15		2	1			10	4
genus	Cellulosimicrobium	2							1		1
genus	Cellvibrio	8	47				1				3
genus	Cenarchaeum DeLong and Preston 1996	1
genus	Centipeda			6
genus	Cerasicoccus	356	218				1			3		1
genus	Cereibacter	1	9				1				2
genus	Cesiribacter		38
genus	Cetobacterium	92	55	4	2							1
genus	Chamaesiphon		5								3
genus	Chania		12								3
genus	Chelativorans	2	9								1
genus	Chelatococcus	4									1
genus	Chelonobacter	41	2									1
genus	Chiayiivirga		1
genus	Chishuiella		5
genus	Chitinilyticum		3
genus	Chitinimonas		20							1
genus	Chitinispirillum		17							2
genus	Chitinivibrio		2
genus	Chitinivorax		11
genus	Chitinophaga	55	33		3		1				4
genus	Chlamydia	1	2				1				1
genus	Chloracidobacterium		17								3
genus	Chlorobaculum	1265	6				1			5	4	2
genus	Chlorobium		4				1				1
genus	Chloroflexus		2								1
genus	Chlorogloeopsis		12
genus	Chloroherpeton	7	23
genus	Chondrocystis										1
genus	Chondromyces	59	1							1
genus	Christensenella		295	179	28	16	3	1	2	10	4	7
genus	Chromatium	310	3
genus	Chromobacterium	146	10				1				4	1
genus	Chromocurvus Csotonyi et al. 2011		1
genus	Chromohalobacter	1	2								1
genus	Chroococcidiopsis	1					1				1
genus	Chroococcus	627	2									2
genus	Chryseobacterium	117	41	2			1		1		4	6
genus	Chryseolinea		32								4
genus	Chryseomicrobium		23							2
genus	Chthoniobacter	30	12
genus	Chthonomonas	5	123								3
genus	Citreitalea		1
genus	Citricoccus	3	1
genus	Citrifermentans	2	10				2
genus	Citrobacter	291	16	55	9	17	3		4	11	7	3
genus	Citromicrobium										3
genus	Clavibacter			1							4
genus	Cloacibacillus	131	150	106	3		2		1	1	1
genus	Cloacibacterium		17	2			1		1		3
genus	Cloacimonas										1
genus	Clostridiisalibacter		7
genus	Clostridioides		100	488	33	3	7			5	6	6
genus	Clostridium	1571	1246	778	34	35	20	1	17	15	8	7
genus	Cnuella		3
genus	Cobetia		1								1
genus	Cocleimonas		2
genus	Coenonia		4
genus	Cognaticolwellia Liu et al. 2020										1
genus	Cohaesibacter		1								1
genus	Cohnella	486	60				3			3	4	7
genus	Coleofasciculus		1
genus	Colidextribacter		1			23				9
genus	Collimonas	7	32				1				4
genus	Collinsella	1277	1061	770	23	32	6		14	9	8	7
genus	Colwellia	2	40				1				4
genus	Comamonas	143	38	22			1		8		3	1
genus	Commensalibacter		3
genus	Companilactobacillus	193	155	1		1	1				4
genus	Conchiformibius	7	1
genus	Conexibacter	6	8
genus	Confluentimicrobium										1
genus	Congregibacter		5
genus	Constrictibacter		2							1
genus	Contubernalis	218										5
genus	Coprobacillus	1528	624	154	27	5	5		3	6	2	7
genus	Coprobacter		712	337	9	9	2		1	5
genus	Coprococcus	1568	1252	2	34	31	20	2	17	15	4	7
genus	Coprophilus									1
genus	Coprothermobacter	14	60	7
genus	Coraliomargarita	424	86								1
genus	Corallibacter		1
genus	Corallococcus										4
genus	Coriobacterium	119	41			2	1				3
genus	Corticibacter		4
genus	Corynebacterium	802	694	445	13	8	2		7	12	8	1
genus	Couchioplanes	1	16
genus	Coxiella		24								1
genus	Crassaminicella						1
genus	Craurococcus			2
genus	Crenothrix	3
genus	Criblamydia		43
genus	Crinalium		1								1
genus	Croceibacter		9								1
genus	Croceibacterium										1
genus	Croceicoccus										1
genus	Cronobacter		88	83			2			1	6
genus	Cruoricaptor		56	1
genus	Cryobacterium		2	11							1
genus	Cryomorpha		97
genus	Cryptanaerobacter		2
genus	Cryptobacterium		414	1			1			3	1
genus	Cryptococcus								13
genus	Cryptosporangium	1
genus	Cryptosporidium						1
genus	Cucumibacter		2
genus	Culturomica									8
genus	Cuneatibacter									10
genus	Cupidesulfovibrio	2	15
genus	Cupriavidus	12	68	1			1			1	4
genus	Curtobacterium	13		1			1				1
genus	Curvibacter	39	7	6			1					2
genus	Cutibacterium	7	12	29			1				1	1
genus	Cyanobacterium	246	34									1
genus	Cyanobium		4	1			1				1
genus	Cyanothece										1
genus	Cyclobacterium		66								4
genus	Cycloclasticus	16	22				1				1
genus	Cyclonatronum										3
genus	Cylindrospermum		1
genus	Cystobacter	59	46								1
genus	Cytobacillus	117			1		1				4
genus	Cytophaga		61							2	1
genus	Dactylococcopsis										3
genus	Dactylosporangium	26	8
genus	Dasania		25
genus	Dechloromonas	135	9				1
genus	Deefgea	1	8
genus	Deferribacter	181	40								4	4
genus	Deferrisoma		24							1
genus	Defluviicoccus		11							1
genus	Defluviimonas		3	1
genus	Defluviitalea		273	2			3			3
genus	Defluviitoga		17								1
genus	Dehalobacter	2	245			3	1				4
genus	Dehalobacterium	642	2	9			2		7	2	1	3
genus	Dehalococcoides	3	64		1		1			1	1
genus	Dehalogenimonas	94	167							1	4
genus	Deinococcus	739	168	6		1	1			3	4	4
genus	Delftia	21	10	64							3
genus	Dellaglioa		106	11
genus	Demequina	13	73							1
genus	Dendrosporobacter		59
genus	Denitratisoma	177	11	1
genus	Denitrobacter	6
genus	Denitrobacterium		1	1		6	1				1
genus	Denitrovibrio										3
genus	Dependoparvovirus									2
genus	Dermabacter	57	70	52				1			1
genus	Dermacoccus	12	1		1				1		1
genus	Dermatophylus	1
genus	Derxia		47
genus	Desemzia	2	275
genus	Desertibacter		5
genus	Deserticella		9
genus	Desmospora		8
genus	Desulfacinum	77	2
genus	Desulfallas		42				3				1
genus	Desulfarculus		148								1
genus	Desulfatibacillum		5				1				3
genus	Desulfatiferula		23
genus	Desulfatiglans		18
genus	Desulfatirhabdium		2
genus	Desulfatitalea		8
genus	Desulfitibacter	3	105	1			2			1
genus	Desulfitispora		47							2
genus	Desulfitobacterium	271	120	1			1				8	3
genus	Desulfobacca	1	25							1	1
genus	Desulfobacter	97	14				4				3	2
genus	Desulfobacterium	1	333				1			1	1
genus	Desulfobacula		1								5
genus	Desulfobaculum		15
genus	Desulfobotulus		7
genus	Desulfobulbus	9	111				1				2
genus	Desulfocapsa	9	2								1
genus	Desulfocarbo		141
genus	Desulfocella		334	1			2			6
genus	Desulfococcus	7	3				1				6
genus	Desulfoconvexum		1
genus	Desulfocurvibacter		1				1
genus	Desulfocurvus		4
genus	Desulfofaba	12	57
genus	Desulfofarcimen	45	276				1				4
genus	Desulfofrigus	168	49
genus	Desulfofundulus	258	111				1
genus	Desulfofustis		12
genus	Desulfoglaeba		279
genus	Desulfohalobium		3								3
genus	Desulfohalophilus		1
genus	Desulfohalotomaculum	156	863				1			1
genus	Desulfohalovibrio	3	89
genus	Desulfomicrobium	93	279				1			7	8
genus	Desulfomonile	208	15								1	1
genus	Desulfonatronobacter		7
genus	Desulfonatronovibrio	217	12									2
genus	Desulfonatronum	289	46									2
genus	Desulfonauticus	80	38									7
genus	Desulfonema		37							2
genus	Desulfonispora		105
genus	Desulfopila		2				1
genus	Desulfoplanes		31
genus	Desulforegula		81				2
genus	Desulforhabdus		1
genus	Desulforhopalus	4
genus	Desulfosalsimonas		3
genus	Desulfosarcina	99	22				1
genus	Desulfoscipio Watanabe et al. 2020		10				1				1
genus	Desulfosoma		146				2
genus	Desulfosporosinus	703	261	1		1	1			6	7	7
genus	Desulfotalea	5	1								2
genus	Desulfothermus		14
genus	Desulfotignum	2
genus	Desulfotomaculum	858	1009	2	4	9	2			9	7	7
genus	Desulfovibrio	1299	1088	382	7	20	18	6	10	14	8	7
genus	Desulfovirga		35
genus	Desulfurella	5	6								4
genus	Desulfuribacillus		7				1
genus	Desulfurispira		3
genus	Desulfurispirillum	272	1				1				1
genus	Desulfurispora	839	679				2			2		2
genus	Desulfurivibrio		4								2
genus	Desulfurobacterium		7								1
genus	Desulfurococcus	1
genus	Desulfuromonas	69	62				2				4
genus	Desulfuromusa	737	4				1			3		5
genus	Dethiobacter	47	8	1			2			3		1
genus	Dethiosulfatibacter		376							2
genus	Dethiosulfovibrio	853	119				1			5		6
genus	Devosia	494	70						1	2	4
genus	Devriesea										1
genus	Dialister	1030	1105	475	13	10	10	4	14	9	4	5
genus	Diaphorobacter	7	5				1			1
genus	Dichelobacter	1									1
genus	Dichotomicrobium		11
genus	Dickeya	25	55			1	1				4
genus	Dictyoglomus		87		2						1
genus	Dielma		671	308	15	9	1			7
genus	Dientamoeba			1
genus	Dietzia	89	165	1							1
genus	Dinoroseobacter										1
genus	Diplorickettsia		13
genus	Discophora									1
genus	Dispar									3
genus	Dissulfuribacter		10
genus	Dokdonella	598	48							1	1	1
genus	Dokdonia		25								4
genus	Dolichospermum	1039	2							4	1	7
genus	Dolosicoccus		11							1
genus	Dolosigranulum		252							1
genus	Dongia		187							3
genus	Dorea	1557	1238	779	35	35	28	16	18	14		7
genus	Draconibacterium		34								1
genus	Drancourtella				3			3		10
genus	Duganella		3							1
genus	Duncaniella						1				4
genus	Duodenibacillus					7		1		2
genus	Dyadobacter	422	76				1				4	4
genus	Dyella	8	8							1	1
genus	Dysgonomonas	1262	787	10		4	7		2	7		7
genus	Dysosmobacter				9		1				3
genus	Echinicola		55				1				4
genus	Ectobacillus		27							2
genus	Ectothiorhodosinus		4
genus	Ectothiorhodospira	250	44								1
genus	Edaphobacter	174										1
genus	Edwardsiella	82	30				1				2
genus	Edwardsiella	36									1
genus	Effusibacillus		240							5
genus	Eggerthella	1170	1049	575	34	24	8	8	8	11	8	6
genus	Eggerthia		465	1						1
genus	Egibacter										1
genus	Egicoccus										1
genus	Ehrlichia	400	13				1			1	1	2
genus	Eikenella	10	7	5			1				1	2
genus	Eilatimonas		2
genus	Eionea		1
genus	Eisenbergiella		961	518	3	24	5	8		10		6
genus	Eisenibacter		162
genus	Ekhidna		1
genus	Elioraea		3
genus	Elizabethkingia	4	21				1				4
genus	Elstera		3
genus	Elusimicrobium	7	65	7						1	1
genus	Emcibacter		169
genus	Emergencia				2			1		10
genus	Empedobacter		8								1
genus	Emticicia	1077	157			2	1			2		5
genus	Endobacter		1
genus	Endobugula	96
genus	Endolissoclinum										1
genus	Endomicrobium										1
genus	Endozoicomonas		5								1
genus	Enhydrobacter	35
genus	Enorma		138	68	2	3	1			1
genus	Ensifer		4				1				1
genus	Enterobacter	685	61	208	6	9	12	1	15	7	8	7
genus	Enterocloster		1110	2	31	33	5	6		10	8
genus	Enterococcus	1278	256	138	29	27	6	6	9	9	8	4
genus	Enterorhabdus		428	263	12	7		7		1
genus	Enteroscipio				2
genus	Enterovibrio										1
genus	Entomomonas										1
genus	Entomoplasma	8	23							2	4
genus	Epibacterium										1
genus	Epilithonimonas	8	3								1
genus	Epulopiscium			59		3			1
genus	Ercella		318
genus	Ereboglobus										3
genus	Eremococcus		34	21						1
genus	Eremococcus		1	11
genus	Erwinia	389	206	1		1	2		11	1	4	2
genus	Erysipelatoclostridium		1246	756	31	35	6	13		10	7	7
genus	Erysipelothrix	1305	755			3	9			6	3	7
genus	Erythrobacter	106	15				1		1		1
genus	Erythromicrobium	11
genus	Escherichia	1276	64	1	26	11	14	11	1	4	8	6
genus	Ethanoligenens	750	1000				4			12	4
genus	Eubacterium	1485	1253	151	35	36	19	16	13	12	8	7
genus	Eudoraea		54
genus	Euryhalocaulis		8
genus	Euzebya	908	68				1			1	1
genus	Euzebyella										1
genus	Evansella										1
genus	Evtepia				12		3
genus	Exiguobacterium	23	41				1				4	3
genus	Exophiala						1
genus	Extensimonas		1
genus	Extibacter									7
genus	Ezakiella		327				3			3	1
genus	Fabibacter		6
genus	Facklamia	146	939	50			2		1	7
genus	Faecalibacterium	1572	1248	772	35	35	25	6	18	5	8	7
genus	Faecalibaculum						1				1
genus	Faecalicatena		761			21	2
genus	Faecalicoccus		726		1	3	3			5
genus	Faecalimonas				2
genus	Faecalitalea	158	150		20	18	5				4
genus	Falcatimonas		1			14	1
genus	Fallax									1
genus	Falsiporphyromonas		298				2
genus	Falsirhodobacter		1
genus	Fangia		12
genus	Fannyhessea		194	2
genus	Fastidiosipila		113	74		1	1				3
genus	Fenollaria		626		2	4				6
genus	Fermentimonas						1				4
genus	Ferrimicrobium	16	2									1
genus	Ferrimonas	13	41								1
genus	Ferrithrix		209
genus	Ferrovibrio		2
genus	Ferrovum		2
genus	Ferruginibacter		78
genus	Fervidicella		11							1
genus	Fervidobacterium	16									4	1
genus	Fibrella		2				1				3
genus	Fibrobacter	116	247	85			2				1
genus	Fictibacillus		46				1				4
genus	Filifactor	455	415			18	1			1	3
genus	Filimonas										4
genus	Filomicrobium		2
genus	Fimbriimonas	2	44								1
genus	Finegoldia	812	886	443	3	5	2		4	9	7	1
genus	Fischerella										1
genus	Flagellimonas		1								1
genus	Flammeovirga	345	32				1			1	4
genus	Flaviaesturariibacter		1
genus	Flavicella		4
genus	Flaviflexus		22				1				3
genus	Flavihumibacter		3
genus	Flavilitoribacter		7
genus	Flavisolibacter	37	1	1			1			1	4
genus	Flavitalea		9
genus	Flavivirga										1
genus	Flavobacterium	68	41	394			5				4	7
genus	Flavonifractor		1220	768	34	31	10	1		10	6	7
genus	Flectobacillus		85
genus	Flexibacter		8	1		2
genus	Flexispira Bryner 1987	3
genus	Flexistipes		70								1
genus	Flexithrix		11
genus	Flintibacter				1	25	2			9
genus	Fluoribacter										1
genus	Fluviicola		17			3	1				1
genus	Fluviimonas		491							1
genus	Fluviispira										3
genus	Fodinibius		5				2
genus	Fodinicurvata		458			1				8
genus	Fontibacillus		4
genus	Fontibacter		35
genus	Fonticella		151	2
genus	Formosa	2									4
genus	Fournierella		1		6	16	1
genus	Francisella	70	64	2			2				4	1
genus	Franconibacter		11
genus	Frankia	2					1				4
genus	Frateuria		3								1
genus	Frederiksenia		4				1
genus	Fretibacter		14
genus	Fretibacterium		8	98			1
genus	Friedmanniella	25	34								1	1
genus	Frigoribacterium	1
genus	Frischella		2				1				3
genus	Frisingicoccus									8
genus	Frondihabitans										1
genus	Fructilactobacillus	74	90	1			1				1
genus	Fructobacillus	72	35
genus	Fuchsiella		22							1
genus	Fucophilus		2
genus	Fulvibacter		1
genus	Fulvimarina		1
genus	Fulvitalea		71
genus	Fulvivirga	7	93
genus	Furfurilactobacillus	639	38				1					1
genus	Fuscovulum Suresh et al. 2019									1	3
genus	Fusibacter	90	238				3			6		6
genus	Fusicatenibacter		1225	760		17	4	15	1
genus	Fusobacterium	690	565	121	4	5	8	1	2	4	8	6
genus	Gabonia Mourembou et al. 2015							1
genus	Gabonibacter					10	1			2
genus	Gaetbulibacter			1
genus	Gaiella		44				2
genus	Galenea		43				2
genus	Gallaecimonas		4
genus	Gallibacterium	27	70	1			1				1	1
genus	Gallicola		76	70					1
genus	Gallionella	199	23						2		1
genus	Garciella		19				2
genus	Gardnerella	81	171	40	1	1				2	1
genus	Garicola		2
genus	Garritya		2
genus	Gelria		5	211			2
genus	Gemella	1431	690	153	16	3	5			7	4	6
genus	Geminicoccus		75							2
genus	Geminisphaera		10
genus	Geminocystis										1
genus	Gemmata	9	12	1							1
genus	Gemmatimonas	8	23								1
genus	Gemmatirosa		8								1
genus	Gemmiger		1131		12	16	7			9
genus	Gemmobacter		2							1	4
genus	Geoalkalibacter		13								1
genus	Geobacillus	496	66	7		11	1		1	3	1	3
genus	Geobacter	95	53				5				4	1
genus	Geodermatophilus	5	10							1	2
genus	Geofilum		131
genus	Geomicrobium		22
genus	Geopsychrobacter		6
genus	Georgenia	16	34
genus	Georhizobium										1
genus	Geosporobacter						2				4
genus	Geothermobacter		2
genus	Geothermomicrobium									2
genus	Geothrix	733	498				2			3
genus	Geotoga		1
genus	Geovibrio	14	1								3
genus	Gibbsiella										4
genus	Giesbergeria	14	1
genus	Gilliamella										1
genus	Gillisia	953	28								1	1
genus	Gilvimarinus		1
genus	Gimesia		2
genus	Glaciecola	223	68								3
genus	Glaciimonas		2
genus	Glaesserella		4				1				1
genus	Gleimia	55	43	1
genus	Globicatella		20	2						1
genus	Gloeobacter		9				1			1	1
genus	Gloeothece		1
genus	Gloeotrichia	3
genus	Glomeribacter	627	2									3
genus	Gluconacetobacter	7	8								1
genus	Gluconobacter	131	3				1				1
genus	Glutamicibacter	128	64									1
genus	Glycocaulis		1								1
genus	Glycomyces	72	24							1		1
genus	Gorbachella		1			1	1
genus	Gordonia	66	103	1			1				4
genus	Gordonibacter		735	457	25	24	2	3		7	1
genus	Gottschalkia		178				4			3	6
genus	Gracilibacillus		190							1
genus	Gracilibacter		530	3		2	3			6
genus	Gracilimonas		330				2			3
genus	Gramella	56	2				1				4	6
genus	Granulibacter										4
genus	Granulicatella	729	158	320	13		2		3	5		5
genus	Granulicella	98	17				1
genus	Granulosicoccus		82								1
genus	Gryllotalpicola		10								1
genus	Gudongella						1				1
genus	Guggenheimella		430				2			6
genus	Guizotia									5
genus	Gulbenkiania		5
genus	Gullanella										2
genus	Gulosibacter	73	11	29						1
genus	Guyparkeria	10	1
genus	Gynuella		39								1
genus	Haematobacter										3
genus	Haematospirillum										2
genus	Haemophilus	1170	936	528	19	21	5	7	17	5	4	6
genus	Hafnia			14	2	2	4				1
genus	Hahella	177	209							1	3
genus	Halanaerobacter	13	4									4
genus	Halanaerobaculum		6
genus	Halanaerobium	330	14				1			4	4	2
genus	Halarcobacter		9				1				2
genus	Halarsenatibacter		76
genus	Haliangium	129	25								3
genus	Haliea		7
genus	Halioglobus		1								1
genus	Haliscomenobacter	1	94								3
genus	Haloactinopolyspora		2
genus	Halobacillus		30				1				4
genus	Halobacteriovorax	7	36				1				4
genus	Halobacteroides		8								1
genus	Halobaculum	2
genus	Halocella		13				1				4
genus	Halochromatium	85	205				2
genus	Halodesulfovibrio		5
genus	Haloechinothrix		3
genus	Haloferax	1
genus	Haloferula		40				2
genus	Haloglycomyces		1
genus	Halolactibacillus		26
genus	Halomicroarcula		1
genus	Halomicronema		1								3
genus	Halomonas	162	471		1	1	3			1	4	3
genus	Halonatronum		5
genus	Haloplasma		34	1						2
genus	Halopolyspora		159				2
genus	Halopseudomonas		8
genus	Halorhodospira	43	104							1	1	2
genus	Halospina		8
genus	Halospirulina		1
genus	Halotalea										1
genus	Halothermothrix		175				2			5	1
genus	Halothiobacillus	17	50				2
genus	Haploplasma	62	28				1			2	3	2
genus	Harryflintia				4		1
genus	Hartmannibacter										1
genus	Hathewaya	1543	678				4			3	3	7
genus	Hazenella		25
genus	Helcococcus	100	195	19
genus	Helicobacter	440	38	3			1			2	8	1
genus	Heliimonas		10
genus	Heliobacterium	1	20				1	3		3	1
genus	Heliomicrobium		1				1				1
genus	Heliomonas					1	1
genus	Heliophilum		22							2
genus	Heliorestis	562	10							5		5
genus	Heliothrix		1
genus	Hellea		9
genus	Henriciella		486							4
genus	Hepatoplasma										1
genus	Hephaestia		2
genus	Herbaspirillum	591	68	250		13	2			3	4	3
genus	Herbinix		423			6	2			6	4
genus	Herminiimonas	51	189							2	4
genus	Herpetosiphon	1	5
genus	Hespellia		1213	499		15	1			10
genus	Heyndrickxia	1	2
genus	Hippea		6								1
genus	Hirschia		1
genus	Histophilus		22				1				1
genus	Hoeflea										1
genus	Holdemanella	790	646		19	2	2			5		6
genus	Holdemania	1332	1048	565	28	23	5		9	14		7
genus	Holophaga		11							2
genus	Holospora				1
genus	Holzapfelia		60
genus	Homo						1
genus	Hoppeia		1
genus	Howardella		880	123		2	2			2
genus	Hoyosella		40
genus	Hugenholtzia		37				2
genus	Humibacter		23
genus	Hungateiclostridium	590	561	2		4	1			7	4	6
genus	Hungatella		1187		33	32	5	7		10	2	7
genus	Hwangdonia		14
genus	Hydrocarboniphaga	1129	2							3
genus	Hydrocoleum	16	1
genus	Hydrogenibacillus		107			4	2			4
genus	Hydrogenispora		575
genus	Hydrogenoanaerobacterium		1006	224			2
genus	Hydrogenobacter		4							1	3
genus	Hydrogenobaculum	10	2				2			4	1
genus	Hydrogenophaga	43	12	1			1			1	1
genus	Hydrogenophilus	675	221	3			1			2
genus	Hydrogenothermus		21
genus	Hydrogenovibrio	31	26								1
genus	Hydrotalea		21
genus	Hylemonella	1
genus	Hymenobacter	931	54	1			1			4	4
genus	Hyphomicrobium	177	20				1				4	4
genus	Hyphomonas	80	12								2	3
genus	Iamia		5
genus	Ianmoorea										3
genus	Ichthyobacterium										1
genus	Ideonella		2
genus	Idiomarina	63	14				1				1
genus	Ignatzschineria	1	6
genus	Ignavibacterium	37	49								1
genus	Ignavigranum		101	2
genus	Ihubacter					28				9
genus	Ileibacterium					3
genus	Ilumatobacter		122
genus	Ilyobacter										4
genus	Immundisolibacter										3
genus	Imperialibacter		18
genus	Imtechella		1		1
genus	Indibacter		27
genus	Indioceanicola										3
genus	Inquilinus	6	18
genus	Insolitispirillum	902	241							7
genus	Intestinibacillus					8				8
genus	Intestinibacter		999	770	24	19	3			9
genus	Intestinibaculum Kim et al. 2019						1				4
genus	Intestinimonas		1193	721	30	34	6	1		10	5
genus	Intrasporangium		2
genus	Iodobacter		7								3
genus	Ishikawaella										1
genus	Isochromatium		6
genus	Izimaplasma										1
genus	Jahnia Reichenbach 2005		1
genus	Janibacter	2									1
genus	Jannaschia	4	1								1
genus	Janthinobacterium	51	6								4	3
genus	Jatrophihabitans		6								1
genus	Jeotgalibaca						1				3
genus	Jeotgalibacillus		12				1			1
genus	Jeotgalicoccus	16	89	1							1
genus	Jiangella	23	2								4	1
genus	Jinshanibacter										3
genus	Johnsonella	1512	873	10	14		1			2		7
genus	Jonesia	38	115
genus	Jonquetella		128	10							1
genus	Kaistella		1								3
genus	Kaistia	10	42							1
genus	Kallipyga		76			1				1
genus	Kallotenue		20
genus	Kandleria		187				2
genus	Kangiella		37								1
genus	Kastovskya		2
genus	Keratinibaculum		12
genus	Ketobacter										1
genus	Ketogulonicigenium		3								1
genus	Kiloniella		52			3				2
genus	Kineococcus	4	13								1
genus	Kineosporia	9	1
genus	Kinetoplastibacterium										4
genus	Kingella	14	4	2							1
genus	Kistimonas		1
genus	Kitasatospora	38	12				1				4	5
genus	Klebsiella	490	77	144	13	7	8	16	12	13	8	5
genus	Kluyvera		23	537		4	1					7
genus	Knoellia	1
genus	Kocuria	53	30	6	1		1		1		7
genus	Kofleria		2
genus	Komagataeibacter		47				1				3
genus	Komvophoron		1
genus	Kordia		1								1
genus	Kordiimonas		2
genus	Koribacter	4									1
genus	Kosakonia	47	301				4				3
genus	Kosmotoga	12	12								1
genus	Kozakia		1								3
genus	Kribbella	83	349									5
genus	Kroppenstedtia		3				1			2
genus	Ktedonobacter		1
genus	Kurthia						1				3
genus	Kushneria	368	6							1	1	2
genus	Kutzneria										1
genus	Kyrpidia		139								1
genus	Kytococcus	1		2							1
genus	Labilibacter		4
genus	Labilibaculum						1				4
genus	Labilithrix		39
genus	Labrenzia						1				1
genus	Labrys	5										6
genus	Laceyella	32	5								1
genus	Lachnoanaerobaculum		1222	12	5		2			7	4
genus	Lachnobacterium	1431	874	12	1	28	6		8	13		4
genus	Lachnoclostridium		1250	2	33	36	14	16		10	8	3
genus	Lachnospira	1572	1245	713	35	35	15	13	18	15	8	7
genus	Lachnotalea				8	3
genus	Lacibacter		3	3
genus	Lacibacterium		139
genus	Lacihabitans		7
genus	Lacimicrobium										1
genus	Lacinutrix		1								4
genus	Lacrimispora		431	1	19	32	2	1		2	8
genus	Lacticaseibacillus	360	71	141	9	3	2	4		1	6	3
genus	Lactiplantibacillus	203	20	65	11		1	4		1	5	4
genus	Lactivibrio		2
genus	Lactobacillus	1459	1244	813	31	36	19	12	18	15	8	7
genus	Lactococcus	1063	788	260	10	9	6	1	7	12	8	3
genus	Lactonifactor		838	477	1	27	4			10		7
genus	Lactovum		301
genus	Lacunisphaera										3
genus	Lagierella					1
genus	Lamprocystis		4
genus	Lancefieldella	91	103	4	2		1			2	3	1
genus	Lapidilactobacillus		4
genus	Laribacter		5								3
genus	Larkinella		1
genus	Larsenimonas		1
genus	Lascolabacillus									1
genus	Latilactobacillus		13	33	4		1			1	5
genus	Lautropia	110	48	8							1	1
genus	Lawsonella					1
genus	Lawsonia	6	646				1			1	3
genus	Lawsonibacter				11		1
genus	Leadbetterella		17								3
genus	Lebetimonas		26
genus	Leclercia						1				1
genus	Legionella	1027	71	1			1			7	4	3
genus	Leifsonia		1	1			1				1
genus	Leisingera										1
genus	Lelliottia	496	2					1			4	2
genus	Leminorella		4								1
genus	Lentibacillus	244	60								1
genus	Lentilactobacillus	80	3	14	2		1				5	1
genus	Lentisphaera		4
genus	Lentzea	2	1								1
genus	Leptofauchea								10
genus	Leptolinea		118							2
genus	Leptolyngbya	343	1	1			1				4	2
genus	Leptonema		25							2
genus	Leptospira	399	33				2				4
genus	Leptospirillum		17								1
genus	Leptothrix	229	7						2			1
genus	Leptotrichia	75	67	29			2			1	4
genus	Leucobacter	21	45				1				1
genus	Leuconostoc	711	874	78	7	3	2		2	12	5	6
genus	Leucothrix	14	5									1
genus	Levilactobacillus	85	48	5	1		1				3	1
genus	Levilinea		1
genus	Levyella		432		2
genus	Lewinella	72	8
genus	Libanicoccus										1
genus	Liberibacter	70	2			6					1	7
genus	Lichenihabitans										1
genus	Ligilactobacillus	192	171	65	7		1			2	8	1
genus	Limibacillus		21
genus	Limibacter		1
genus	Limimaricola		2
genus	Limimonas		5
genus	Limisphaera		27				2
genus	Limnobacter	1145	32	1			1		2			1
genus	Limnobaculum										1
genus	Limnochorda		1								1
genus	Limnohabitans	18	3						2
genus	Limnoraphis		3
genus	Limnospira	2
genus	Limosa									3
genus	Limosilactobacillus	245	340	75	6	2	2	2		1	7	1
genus	Liquorilactobacillus		183				1
genus	Lishizhenia		2
genus	Listeria	357	268	1	1		1		4	2	4
genus	Litoribacillus		69
genus	Litoribacter		36
genus	Litoribrevibacter		12
genus	Litoricola	101	39							1		3
genus	Litorilinea		12				2			2
genus	Litorilituus		89							1	4
genus	Litorimonas		1
genus	Loigolactobacillus		11				1			1
genus	Loktanella	2	8
genus	Longibaculum				6		1			3
genus	Longicatena				2					4
genus	Longilinea	7	3
genus	Longimonas		76
genus	Lonsdalea	8
genus