Enter GI EcologiX (Invivo) Report

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Note: Many of these were created from versions of reports forwarded by users from several years ago. If several bacteria are missing, please forward a copy of the report to Ken[at]lassesen.com so we may update.

We use a subjective scale and leave the reader to translate the lab reports appropriately. If the bacteria are identified as bad/pathogenic and you are low, then do not enter them.

BacteriaReported LevelAlso Known asComment
'Candida glycerinogenes' [species] | 'Candida glycerinogenes'| AJ 4457 [[Candida krusei]]| ATCC 24210| ATCC 6258 [[Candida krusei]]| ATCC 749 [[Candida krusei]]| Candida acidothermophilum| Candida acidothermophilum Y. Masuda, Ken. Kato, Y. Takayama, K. Kida & Meis. Nakan., 1975| Candida krusei| Candida krusei (Castell.) Berkhout, 1923| CBS 5147| CBS 5147 T| CBS 573 [[Candida krusei]]| DBVPG 7230 [[Candida krusei]]| IAM 12186 [[Candida krusei]]| IFO 1064 [[Candida krusei]]| IFO 1395 [[Candida krusei]]| Issatchenkia orientalis| Issatchenkia orientalis Kudryavtsev, 1960| NRRL Y-413 [[Candida krusei]]| NRRL Y-5396| NRRL Y-7179 [[Candida krusei]]| Pichia kudriavzevii| Pichia kudriavzevii Boidin, Pignal & Besson, 1965| Saccharomyces krusei| Saccharomyces krusei Castell., 1910| Saccharomyces sp. p1
[Eubacterium] rectale [species] | "Bacteroides rectalis" Hauduroy et al. 1937| "Pseudobacterium rectale" (Hauduroy et al. 1937) Krasil'nikov 1949| 'Roseburia rectale'| [Eubacterium] rectale| Agathobacter rectalis| Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016| ATCC 33656| Bacteroides rectalis| CIP 105953| DSM 17629| Eubacterium rectale| Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938| NCIMB 14373| not ATCC 25578| not VPI 0989| Pseudobacterium rectale| Roseburia rectale| strain A1-86| VPI 0990
[Ruminococcus] gnavus [species] | [Ruminococcus] gnavus| ATCC 29149| Ruminococcus gnavus| Ruminococcus gnavus Moore et al. 1976| VPI C7-9 Not Healthy Predictor
[Ruminococcus] torques [species] | [Ruminococcus] torques| ATCC 27756| Ruminococcus torques| Ruminococcus torques Holdeman and Moore 1974
Akkermansia muciniphila [species] | Akkermansia muciniphila| Akkermansia muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016| Akkermansia sp. YL44| ATCC BAA-835| CIP 107961| strain Muc
Anaerostipes caccae [species] | Anaerostipes caccae| Anaerostipes caccae Schwiertz et al. 2002| Anaerostipes sp. 3_2_56FAA| butyrate-producing bacterium L1-92| DSM 14662| JCM 13470| NCIMB 13811| strain L1-92
Aspergillus fumigates [species] | Aspergillus fumigates| Aspergillus fumigatus| Aspergillus fumigatus Fresen. 1863| ATCC 1022| CBS 133.61| IMI 016152| KACC 41143| LSHB Ac71| NCTC 982| Neosartorya fumigata| Neosartorya fumigata O'Gorman, Fuller & Dyer 2008| NRRL 163| QM 1981| Sartorya fumigata| Thom 118| WB 163
Bacteroides [genus] | "Ristella" Prevot 1938| Bacteroides| Bacteroides Castellani and Chalmers 1919 (Approved Lists 1980) emend. Shah and Collins 1989| Capsularis| Capsularis Prevot 1938 (Approved Lists 1980)| Ristella
Bacteroides dorei [species] | Bacteroides dorei| Bacteroides dorei Bakir et al. 2006 emend. Hahnke et al. 2016| Bacteroides sp. 175T| Bacteroides sp. 219| DSM 17855| JCM 13471| strain 175
Bacteroides fragilis [species] | "Bacteroides inaequalis" Eggerth and Gagnon 1933| "Bacteroides incommunis" Eggerth and Gagnon 1933| "Bacteroides uncatus" Eggerth and Gagnon 1933| "Fusiformis fragilis" Topley and Wilson 1929| "Pseudobacterium fragilis" Krasil'nikov 1949| "Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Ristella fragilis" Prevot 1938| "Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938| "Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus intermedius" Bergan and Hovig 1968| ATCC 25285| Bacillus fragilis| Bacillus fragilis Veillon and Zuber 1898| Bacteroides fragilis| Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| Bacteroides inaequalis| Bacteroides incommunis| Bacteroides sp. 2_1_16| Bacteroides sp. 2_1_56FAA| Bacteroides uncatus| CCUG 4856| CIP 77.16| DSM 2151| Fusiformis fragilis| JCM 11019| LMG 10263| LMG:10263| NCTC 9343| Pseudobacterium fragilis| Pseudobacterium inaequalis| Pseudobacterium incommunis| Pseudobacterium uncatum| Ristella fragilis| Ristella incommunis| Ristella uncata| Sphaerophorus inaequalis| Sphaerophorus intermedius Pathogen
Bacteroides ovatus [species] | "Bacteroides fragilis subsp. ovatus" (Eggerth and Gagnon 1933) Holdeman and Moore 1970| "Pasteurella ovata" (Eggerth and Gagnon 1933) Prevot 1938| "Pseudobacterium ovatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| ATCC 8483| bacterium NLAE-zl-C11| bacterium NLAE-zl-C34| bacterium NLAE-zl-C500| bacterium NLAE-zl-C57| bacterium NLAE-zl-H304| bacterium NLAE-zl-H361| bacterium NLAE-zl-H59| bacterium NLAE-zl-H73| Bacteroides fragilis subsp. ovatus| Bacteroides ovatus| Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| BCRC 10623| CCRC 10623| CCRC:10623| CCUG 4943| CIP 103756| DSM 1896| JCM 5824| NCTC 11153| Pasteurella ovata| Pseudobacterium ovatum
Bacteroides thetaiotaomicron [species] | "Bacillus thetaiotaomicron" Distaso 1912| "Bacteroides fragilis subsp. thetaiotaomicron" (Distaso 1912) Holdeman and Moore 1970| "Pseudobacterium thetaiotaomicron" (Distaso 1912) Krasil'nikov 1949| "Sphaerocillus thetaiotaomicron" (Distaso 1912) Prevot 1938| ATCC 29148| Bacillus thetaiotaomicron| bacterium NLAE-zl-C523| bacterium NLAE-zl-C579| bacterium NLAE-zl-G288| bacterium NLAE-zl-H207| bacterium NLAE-zl-H463| bacterium NLAE-zl-H492| bacterium NLAE-zl-P32| bacterium NLAE-zl-P699| Bacteroides fragilis subsp. thetaiotaomicron| Bacteroides sp. 1_1_6| Bacteroides thetaiotaomicron| Bacteroides thetaiotaomicron (Distaso 1912) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| CCUG 10774| CIP 104206| DSM 2079| JCM 5827| NCTC 10582| Pseudobacterium thetaiotaomicron| Sphaerocillus thetaiotaomicron| VPI 5482
Bacteroides uniformis [species] | ATCC 8492| Bacteroides uniformis| Bacteroides uniformis Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| CCUG 4942| CIP 103695| DSM 6597| JCM 5828| NCTC 13054
Bacteroides vulgatus [species] | ATCC 8482| bacterium NLAE-zl-G202| Bacteroides vulgatus| Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| BCRC 12903| CCRC 12903| CCRC:12903| CCUG 4940| CIP 103714| DSM 1447| IFO 14291| JCM 5826| LMG 17767| LMG 7956| LMG:17767| LMG:7956| NBRC 14291| NCTC 11154
Bifidobacterium [genus] | "Bifidibacterium" Prevot 1938| "Tissieria" Pribram 1929| Bifidibacterium| Bifidobacterium| Bifidobacterium Orla-Jensen 1924| Tissieria
Bilophila wadsworthia [species] | ATCC 49260| Bilophila wadsworthia| Bilophila wadsworthia Baron et al. 1990| CCUG 32349| strain 7959| WAL 7959
Candida albicans [species] | ATCC 11006 [[Monilia stellatoidea]]| ATCC 18804| BCC 5390| BCRC 20512| Candida albicans| Candida albicans (C.P. Robin) Berkhout, 1923| Candida albicans var. stellatoidea| Candida albicans var. stellatoidea (C.P. Jones & D.S. Martin) Diddens & Lodder, 1942| Candida stellatoidea| Candida stellatoidea (C.P. Jones & D.S. Martin) Langeron & Guerra, 1939| Candida stellatoidea type I| CBS 562| CCRC 20512| CCRC:20512| CECT 1002| Dematium albicans| Dematium albicans (C.P. Robin) E. Laurent, 1889| IFO 1385| JCM 1542| KCTC 7270| Monilia albicans| Monilia albicans (C.P. Robin) Zopf, 1890| Monilia stellatoidea| Monilia stellatoidea C.P. Jones & D.S. Martin, 1938| MUCL 29800| Myceloblastanon albicans| Myceloblastanon albicans (C.P. Robin) M. Ota, 1927| Mycotorula albicans| Mycotorula albicans (C.P. Robin) Langeron & Talice, 1932| NBIMCC 72| NBRC 1385| NCAIM Y.00971| NCYC 597| NRRL Y-12983| Oidium albicans| Oidium albicans C.P. Robin, 1853| Parasaccharomyces albicans| Parasaccharomyces albicans (C.P. Robin) Mello & L.G. Fern., 1918| Procandida albicans| Procandida albicans (C.P. Robin) E.K. Novak & Zsolt, 1961| Procandida stellatoidea| Procandida stellatoidea (C.P. Jones & D.S. Martin) E.K. Novak & Zsolt, 1961| PYCC 3436| Saccharomyces albicans| Saccharomyces albicans (C.P. Robin) Reess, 1877| Syringospora albicans| Syringospora albicans (C.P. Robin) C.W. Dodge, 1935| UAMH 8765
Candida tropicalis [species] | ATCC 4563| ATCC 7349| ATCC 750| Atelosaccharomyces tropicalis| Candida albicans var. tropicalis| Candida tropicalis| Candida tropicalis (Castell.) Berkhout, 1923| Castellania tropicalis| CBS 94| CCRC 20520| CCRC:20520| DBVPG 3982| Endomyces tropicalis| IFO 1070| IFO 1400| JCM 1541| Monilia tropicalis| Myceloblastanon tropicale| Mycotorula tropicalis| NRRL Y-12699| NRRL Y-12968| NRRL Y-607| Oidium tropicale| Oidium tropicale Castell., 1910| Procandida tropicalis
Citrobacter [genus] | Citrobacter| Citrobacter Werkman and Gillen 1932| Levinea| Levinea Young et al. 1971
Citrobacter freundii [species] | "Bacterium freundii" Braak 1928| "Escherichia freundii" (Braak 1928) Yale 1939| "Salmonella ballerup" Kauffmann and Mller 1940| "Salmonella hormaechei" Monteverde 1944| ATCC 8090| Bacterium freundii| CCUG 418| CIP 57.32| Citrobacter ballerupensis| Citrobacter freundii| Citrobacter freundii (Braak 1928) Werkman and Gillen 1932| Citrobacter sp. HPC1276| Citrobacter sp. KDS 3| DSM 30039| Escherichia freundii| HAMBI 1695| IFO 12681| JCM 1657| LMG 3246| LMG:3246| NBRC 12681| NCAIM B.01468| NCTC 9750| NRRL B-2643| Salmonella ballerup| Salmonella hormaechei| the Ballerup group of bacteria| the Bethesda group of bacteria
Citrobacter koseri [species] | "Aerobacter diversum" (sic) Burkey 1928| Aerobacter diversum| ATCC 25408 [[Levinea malonatica Young et al. 1971 (Approved Lists 1980)]]| ATCC 27028| ATCC 27156 [[Citrobacter diversus]]| CCM 2537| CCUG 14559 [[Citrobacter diversus]]| CCUG 4859| CDC 3613-63 [[Citrobacter diversus]]| CIP 105014| CIP 82.87| CIP 82.88 [[Levinea malonatica Young et al. 1971 (Approved Lists 1980)]]| Citrobacter diversum| Citrobacter diversum (sic) (Burkey 1928) Werkman and Gillen 1932| Citrobacter diversus| Citrobacter diversus (Burkey 1928) Werkman and Gillen 1932| Citrobacter intermedius biogroup b| Citrobacter koseri| Citrobacter koseri Frederiksen 1970| DSM 4570 [[Citrobacter diversus]]| DSM 4595| DSM 4596 [[Levinea malonatica Young et al. 1971 (Approved Lists 1980)]]| JCM 1658| JCM 1659 [[Citrobacter diversus]]| JCM 1660 [[Levinea malonatica Young et al. 1971 (Approved Lists 1980)]]| Levinea malonatica| Levinea malonatica Young et al. 1971 (Approved Lists 1980)| LMG 5519| LMG 5741 [[Citrobacter diversus]]| LMG:5519| LMG:5741 [[Citrobacter diversus]]| NCTC 10786| NCTC 10810 [[Levinea malonatica Young et al. 1971 (Approved Lists 1980)]]| strain Frederiksen 14804
Clostridium difficile [species] | "Bacillus difficilis" Hall and O'Toole 1935| "Peptoclostridium difficile" Yutin and Galperin 2013| AS 1.2184| ATCC 9689| Bacillus difficilis| BCRC 10642| CCRC 10642| CCRC:10642| CCUG 4938| CIP 104282| Clostridioides difficile| Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016| Clostridium difficile| Clostridium difficile (Hall and O'Toole 1935) Prevot 1938 (Approved Lists 1980)| Clostridium difficle| Clostridium sp. HMSC19D05| DSM 1296| DSMZ 1296| JCM 1296| LMG 15861| LMG:15861| NCIMB 10666| NCTC 11209| Peptoclostridium difficile Colitis
Clostridium perfringens [species] | "Bacillus perfringens" Veillon and Zuber 1898| "Bacterium welchii" Migula 1900| 'Clostridium plagarum'| ATCC 13124| Bacillus perfringens| Bacterium welchii| BCRC 10913| CCRC 10913| CCRC:10913| CCUG 1795| CIP 103409| Clostridium perfringens| Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937| Clostridium plagarum| Clostridium sp. NCIM 2677| DSM 756| JCM 1290| LMG 11264| LMG:11264| NCAIM B.01417| NCCB 89165| NCIMB 6125| NCTC 8237 Food poisoning, gas gangrene
Clostridium sporogenes [species] | "Bacillus sporogenes var. A" Metchnikoff 1908| "Clostridium sporogenes var. A" (Metchnikoff 1908) Prevot 1938| "Clostridium sporogenes" (Heller 1922) Bergey et al. 1923| "Metchnikovillus sporogenes" (sic) Heller 1922| ATCC 3584| Bacillus sporogenes var. A| BCRC 11259| CCRC 11259| CCRC:11259| CCUG 15941| CIP 106155| Clostridium sporogenes| Clostridium sporogenes (Metchnikoff 1908) Bergey et al. 1923| Clostridium sporogenes var. A| DSM 795| JCM 1416| LMG 8421| LMG:8421| Metchnikovillus sporogenes| NCIMB 10696| NCTC 13020
Desulfovibrio [genus] | "Sporovibrio" Starkey 1938| Desulfomonas| Desulfomonas Moore et al. 1976| Desulfovibrio| Desulfovibrio Kluyver and van Niel 1936 (Approved Lists 1980) emend. Loubinoux et al. 2002| Sporovibrio
Enterobacter cloacae [species] | "Aerobacter cloacae" (Jordan 1890) Bergey et al. 1923| "Aerobacter cloacae" (Jordan 1890) Hormaeche and Edwards 1958| "Bacillus cloacae" Jordan 1890| "Bacterium cloacae" (Jordan 1890) Lehmann and Neumann 1896| "Cloaca cloacae" (Jordan 1890) Castellani and Chalmers 1919| 'Enterobacter hormaechei subsp. grimontii'| Achromobacter sp. ATCC13047| Aerobacter cloacae| ATCC 13047| Bacillus cloacae| Bacterium cloacae| CCUG 28448| CCUG 29301| CCUG 6323| CIP 60.85| Cloaca cloacae| DSM 30054| Enterobacter cloacae| Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960| Enterobacter hormaechei subsp. grimontii| Enterobacter sp. DIV140| Enterobacter sp. DIV160| Enterobacter sp. DIV167| Enterobacter sp. ES-2| Enterobacter sp. JS08.Deg01| Enterobacter sp. NCIM 2164| Enterobacter sp. PX-A-E.1| HAMBI 1295| HAMBI 96| IFO 13535| JCM 1232| Klebsiella sp. SBP-8| LMG 2783| LMG:2783| NBRC 13535| NCTC 10005
Enterococcus faecium [species] | ATCC 19434| CCUG 542| CFBP 4248| CIP 103014| DSM 20477| Enterococcus faecium| Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Balz 1984| HAMBI 1710| JCM 5804| JCM 8727| LMG 11423| LMG:11423| NBRC 100485| NBRC 100486| NCDO 942| NCIMB 11508| NCTC 7171| Streptococcus faecium| Streptococcus faecium Orla-Jensen 1919 (Approved Lists 1980) Pathogen
Enterococcus gallinarum [species] | ATCC 49573| CCUG 18658| CECT 970| CIP 103013| DSM 24841| Enterococcus gallinarum| Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984| JCM 8728| LMG 13129| LMG:13129| NBRC 100675| NCDO 2313| NCIMB 702313| NCTC 12359| strain F87/276| strain PB21| Streptococcus gallinarum| Streptococcus gallinarum Bridge and Sneath 1982
Escherichia coli [species] | "Bacillus coli" Migula 1895| "Bacterium coli commune" Escherich 1885| "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896| ATCC 11775| Bacillus coli| bacterium 10a| Bacterium coli| Bacterium coli commune| bacterium E3| CCUG 24| CCUG 29300| CIP 54.8| DSM 30083| E. coli| Enterococcus coli| Escherichia coli| Escherichia coli (Migula 1895) Castellani and Chalmers 1919| Escherichia sp. 3_2_53FAA| Escherichia sp. MAR| Escherichia/Shigella coli| JCM 1649| LMG 2092| LMG:2092| NBRC 102203| NCCB 54008| NCTC 9001 Bacillary dysentery, cells invade intestinal epithelial cells
Faecalibacterium prausnitzii [species] | "Bacillus mucosus anaerobius" Prausnitz 1922| "Bacteroides praussnitzii" (sic) Hauduroy et al. 1937| ATCC 27768| Bacillus mucosus anaerobius| Bacteroides praussnitzii| butyrate-producing bacterium A2-165| Faecalibacterium prausnitzii| Faecalibacterium prausnitzii (Hauduroy et al. 1937) Duncan et al. 2002| Fusobacterium prausnitzii| Fusobacterium prausnitzii (Hauduroy et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)| NCIMB 13872
Fusobacterium nucleatum [species] | "Bacillus fusiformis" Veillon and Zuber 1898| "Corynebacterium fusiforme" (Veillon and Zuber 1898) Lehmann and Neumann 1907| "Fusiformis fusiformis" (Veillon and Zuber 1898) Topley and Wilson 1936| "Fusiformis nucleatus" (Knorr 1922) Bergey et al. 1930| ATCC 25586| CCUG 32989| CCUG 33059| CIP 101130| Corynebacterium fusiforme| DSM 15643| Fusibacterium nucleatum| Fusiformis fusiformis| Fusiformis nucleatus| Fusobacterium fusiforme| Fusobacterium nucleatum| Fusobacterium nucleatum Knorr 1922| Fusobacterium plauti-vincenti| JCM 8532| LMG 13131| LMG:13131 Not Healthy Predictor
Hafnia alvei [species] | "Enterobacter aerogenes subsp. hafniae" Ewing 1963| "Enterobacter alvei" (Mller 1954) Sakazaki 1961| "Enterobacter hafniae" Ewing and Fife 1968| ATCC 13337| CCUG 41547| CIP 57.31| DSM 30163| Enterobacter aerogenes subsp. hafniae| Enterobacter alvei| Enterobacter hafniae| Hafnia alvei| Hafnia alvei Moller 1954| Hafnia alvei sensu stricto genomosp. 1| HAMBI 1279| HAMBI 1876| JCM 1666| LMG 10392| LMG:10392| NCTC 8105| NRRL B-4260
Helicobacter pylori [species] | ATCC 43504| ATCC 49396 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| Campylobacter pylori| Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1988| Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1989| Campylobacter pylori Marshall et al. 1985 corrig. Marshall and Goodwin 1987| Campylobacter pylori subsp. pylori| Campylobacter pylori subsp. pylori Marshall et al. 1985| Campylobacter pyloridis| Campylobacter pyloridis Marshall et al.1985| CCUG 15815 B| CCUG 17874| CCUG 39500| CIP 103995| DSM 21031| DSM 4867| DSM 7492 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| Helicobacter nemestrinae| Helicobacter nemestrinae Bronsdon et al. 1991| Helicobacter pylori| Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989| JCM 12093| LMG 18041| LMG 19449| LMG:18041| LMG:19449| NCTC 11637| NCTC 12491 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| strain Royal Perth Hospital 13487| strain T81213-NTB [[Helicobacter nemestrinae Bronsdon et al. 1991]] Gastric ulcers
Klebsiella aerogenes [species] | "Aerobacter aerogenes" Hormaeche and Edwards 1958| Aerobacter aerogenes| ATCC 13048| CCUG 1429| CIP 60.86| DSM 30053| Enterobacter aerogenes| Enterobacter aerogenes Hormaeche and Edwards 1960| HAMBI 101| HAMBI 1898| IFO 13534| JCM 1235| KCTC 2190| Klebsiella aerogenes| Klebsiella aerogenes (Hormaeche and Edwards 1960) Tindall et al. 2017| Klebsiella mobilis| Klebsiella mobilis Bascomb et al. 1971| LMG 2094| LMG:2094| NBRC 13534| NCAIM B.01467| NCTC 10006
Klebsiella oxytoca [species] | "Bacillus oxytocus perniciosus" Flugge 1886| ATCC 13182| Bacillus oxytocus perniciosus| CCUG 15717| CIP 103434| DSM 5175| HAMBI 1301| JCM 1665| Klebsiella oxytoca| Klebsiella oxytoca (Flugge 1886) Lautrop 1956| Klebsiella sp. CECRI-24/07| Klebsiella sp. MN9SED2| LMG 3055| LMG:3055| NBRC 102593| NBRC 105695
Klebsiella pneumoniae aerogenes [species] | "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886| "Bacterium pneumoniae crouposae" Zopf 1885| "Hyalococcus pneumoniae" Schroeter 1886| 'Klebsiella aerogenes' (Kruse) Taylor et al. 1956| ATCC 13883| Bacillus pneumoniae| Bacterium pneumoniae crouposae| CCUG 225| CIP 82.91| DSM 30104| HAMBI 450| Hyalococcus pneumoniae| IFO 14940| JCM 1662| Klebsiella pneumoniae| Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887| Klebsiella pneumoniae aerogenes| Klebsiella sp. 2N3| Klebsiella sp. C1(2016)| Klebsiella sp. M-AI-2| Klebsiella sp. PB12| Klebsiella sp. RCE-7| LMG 2095| LMG:2095| NBRC 14940| NCTC 9633 Not Healthy Predictor
Lactobacillus [genus] | Lactobacillus| Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Cai et al. 2012| Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Haakensen et al. 2009| Paralactobacillus| Paralactobacillus Leisner et al. 2000
Malassezia restricta [species] | ATCC 96801| CBS 7877| Malassezia restricta
Methanobrevibacter smithii [species] | ATCC 35061| DSM 861| Methanobrevibacter smithii| Methanobrevibacter smithii Balch and Wolfe 1981| OCM 144| strain PS
Morganella morganii [species] | "Bacillus morgani" (sic) Winslow et al. 1919| "Organism N 1" Morgan 1906| "Salmonella morgani" (sic) (Winslow et al. 1919) Castellani and Chalmers 1919| ATCC 25830| ATCC 8076H| Bacillus morgani| CCUG 6328| CIP 103763| CIP A231| DSM 30164| JCM 1672| LMG 7874| LMG:7874| Morganella morganii| Morganella morganii (Winslow et al. 1919) Brenner et al. 1978 (sic)| Morganella morganii (Winslow et al. 1919) Fulton 1943| NBRC 3848| NCCB 73065| NCTC 235| Organism N 1| Proteus morganii| Proteus morganii (Winslow et al. 1919) Yale 1939 (Approved Lists 1980)| Salmonella morgani
Mycobacterium avium [species] | "Bacillus tuberculosis gallinarum" Sternberg 1892| "Mycobacterium tuberculosis avium" Lehmann and Neumann 1896| "Mycobacterium tuberculosis typus gallinaceus" Lehmann and Neumann 1907| "Tuberculose des oiseaux" Strauss and Gamaleia 1891| ATCC 25291| Bacillus tuberculosis gallinarum| CCUG 20992| CIP 104244| DSM 44156| Mycobacterium avium| Mycobacterium avium Chester 1901 (Approved Lists 1980) emend. Thorel et al. 1990| Mycobacterium tuberculosis avium| Mycobacterium tuberculosis typus gallinaceus| NCTC 13034| Tuberculose des oiseaux
Oxalobacter formigenes [species] | ATCC 35274| CIP 106513| Oxalobacter formigenes| Oxalobacter formigenes Allison et al. 1985| strain OxB
Prevotella copri [species] | DSM 18205| JCM 13464| Prevotella copri| Prevotella copri Hayashi et al. 2007 emend. Hahnke et al. 2016| Prevotella sp. 'Indica Stool'| Prevotella sp. CB18| Prevotella sp. CB23| Prevotella sp. CB26| Prevotella sp. CB28| Prevotella sp. CB7| strain CB7
Proteus mirabilis [species] | ATCC 29906| CCUG 26767| CIP 103181| DSM 4479| JCM 1669| LMG 3257| LMG:3257| NCTC 11938| Proteus mirabilis| Proteus mirabilis Hauser 1885
Pseudomonas aeruginosa [species] | "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885| "Bacillus pyocyaneus" (Zopf 1884) Flugge 1886| "Bacterium aeruginosum" Cohn 1872| "Bacterium aeruginosum" Schroeter 1872| "Bacterium pyocyaneum" (Zopf 1884) Lehmann and Neumann 1896| "Micrococcus pyocyaneus" Zopf 1884| "Pseudomonas pyocyanea" (Zopf 1884) Migula 1895| ATCC 10145| ATCC 10145-U| Bacillus aeruginosus| Bacillus pyocyaneus| Bacterium aeruginosum| bacterium ASFP-37| bacterium ASFP-38| bacterium ASFP-45| bacterium ASFP-46| bacterium ASFP-48| bacterium CRM125| Bacterium pyocyaneum| CCEB 481| CCUG 28447| CCUG 29297| CCUG 551| CFBP 2466| CIP 100720| DSM 50071| IBCS 277| IFO 12689| JCM 5962| LMG 1242| LMG:1242| Micrococcus pyocyaneus| NBRC 12689| NCCB 76039| NCIB 8295| NCIB:8295| NCIMB 8295| NCTC 10332| NRRL B-771| probable synonym or variety: "Pseudomonas polycolor" Clara 1930| Pseudomonas aeruginosa| Pseudomonas aeruginosa (Schroeter 1872) Migula 1900| Pseudomonas polycolor| Pseudomonas pyocyanea| Pseudomonas sp. 2_1_26| Pseudomonas sp. ACP_02| Pseudomonas sp. CRRI 93| Pseudomonas sp. HSA1/2016| Pseudomonas sp. NCIM 2036| Pseudomonas sp. NCIM 2862| Pseudomonas sp. PR_01| Pseudomonas sp. PSE5| Pseudomonas sp. RV3| Pseudomonas sp. UFT2/2016| RH 815| VKM B-588 Opportunistic, nosocomial pneumonia and sepsis
Ruminococcus bromii [species] | ATCC 27255| Ruminococcus bromii| Ruminococcus bromii Moore et al. 1972
Serratia marcescens [species] | "Bacillus marcescens" (Bizio 1823) Trevisan in de Toni and Trevisan 1889| ATCC 13880| Bacillus marcescens| CCUG 1647| CFBP 4226| CIP 103235| DSM 30121| Enterobacteriaceae bacterium KO4| HAMBI 1286| JCM 1239| LMG 2792| LMG:2792| NBRC 102204| NCTC 10211| NRRL B-2544| Pantoea sp. NAB7| Serratia marcescens| Serratia marcescens Bizio 1823| Serratia sp. NCIM 2919| Serratia sp. UENF-22GI| VKM B-1248 Pathogen
Staphylococcus aureus [species] | "Micrococcus aureus" (Rosenbach 1884) Zopf 1885| "Micrococcus pyogenes" Lehmann and Neumann 1896| "Staphlococcus pyogenes citreus" Passet 1885| "Staphylococcus pyogenes aureus" Rosenbach 1884| ATCC 12600| ATCC 12600-U| CCM 885| CCUG 1800| CIP 65.8| DSM 20231| HAMBI 66| JCM 20624| Micrococcus aureus| Micrococcus pyogenes| NBRC 100910| NCAIM B.01065| NCCB 72047| NCTC 8532| Staphlococcus pyogenes citreus| Staphylococcus aureus| Staphylococcus aureus Rosenbach 1884| Staphylococcus pyogenes aureus Pathogen
Streptococcus agalactiae [species] | "Streptoccocus de la mammite" Nocard and Mollereau 1887| "Streptococcus agalactiae contagiosae" Kitt 1893| "Streptococcus mastitidis" Migula 1900| ATCC 13813| ATCC 51487 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| CCUG 4208| CIP 103227| CIP 103768 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| DSM 2134| JCM 5671| LMG 14694| LMG 15977 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| LMG:14694| LMG:15977 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| NCTC 8181| strain ND 2-22 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| Streptoccocus de la mammite| Streptococcus agalactiae| Streptococcus agalactiae contagiosae| Streptococcus agalactiae Lehmann and Neumann 1896| Streptococcus difficile| Streptococcus difficilis| Streptococcus difficilis corrig. Eldar et al. 1995| Streptococcus mastitidis Pathogen
Streptococcus faecalis [species] | "Enterococcus proteiformis" Thiercelin and Jouhaud 1903| "Enterocoque" Thiercelin 1902| "Micrococcus ovalis" Escherich 1886| "Micrococcus zymogenes" MacCallum and Hastings 1899| "Streptococcus glycerinaceus" Orla-Jensen 1919| "Streptococcus liquefaciens" Sternberg 1892| ATCC 19433| ATCC 19433-U| CCUG 19916| CIP 103015| DSM 20478| Enterococcus faecalis| Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Balz 1984| Enterococcus proteiformis| Enterococcus sp. 7L76| Enterococcus sp. KB1| Enterocoque| HAMBI 1711| JCM 5803| JCM 8726| LMG 7937| LMG:7937| Micrococcus ovalis| Micrococcus zymogenes| NBRC 100480| NBRC 100481| NCAIM B.01312| NCDO 581| NCIMB 775| NCTC 775| Streptococcus faecalis| Streptococcus faecalis Andrewes and Horder 1906 (Approved Lists 1980)| Streptococcus glycerinaceus| Streptococcus liquefaciens Endocarditis, septicemia, urinary tract infections, meningitis
Streptococcus pneumoniae [species] | "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886| "Micrococcus pneumoniae" Klein 1884| ATCC 33400| CCUG 28588| CIP 102911| Diplococcus pneumoniae| DSM 20566| LMG 14545| LMG:14545| Micrococcus pneumoniae| NBRC 102642| NCTC 7465| Streptococcus pneumoniae| Streptococcus pneumoniae (Klein 1884) Chester 1901 Not Healthy Predictor
Streptococcus pyogenes [species] | "Micrococcus scarlatinae" Klein 1884| "Streptococcus erysipelatos" (sic) Rosenbach 1884| "Streptococcus hemolyticus" Rolly 1911| "Streptococcus scarlatinae" Klein 1887| ATCC 12344| CCUG 12701| CCUG 4207| CIP 56.41| DSM 20565| JCM 5674| LMG 14700| LMG:14700| Micrococcus scarlatinae| NCAIM B.01705| NCTC 8198| Streptococcus erysipelatos| Streptococcus hemolyticus| Streptococcus pyogenes| Streptococcus pyogenes Rosenbach 1884| Streptococcus scarlatinae Pathogen
Subdoligranulum variabile [species] | CCUG 47106| Clostridium sp. BI-114| DSM 15176| strain BI 114| Subdoligranulum variabile| Subdoligranulum variabile Holstrom et al. 2004 Not Healthy Predictor
Veillonella [genus] | Veillonella| Veillonella Prevot 1933 (Approved Lists 1980) emend. Aujoulat et al. 2014| Veillonella Prevot 1933 (Approved Lists 1980) emend. Mays et al. 1982
Yersinia enterocolitica [species] | "Bacterium enterocoliticum" Schleifstein and Coleman 1939| ATCC 9610| Bacterium enterocoliticum| CCUG 11291| CCUG 12369| CIP 80.27| DSM 4780| JCM 7577| LMG 7899| LMG:7899| NBRC 105693| NCTC 12982| Yersinia enterocolitica| Yersinia enterocolitica (Schleifstein and Coleman 1939) Frederiksen 1964 Yersiniosis

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