Enter DayTwo Report

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Note: Many of these were created from versions of reports forwarded by users from several years ago. If several bacteria are missing, please forward a copy of the report to Ken[at]lassesen.com so we may update.

We use a subjective scale and leave the reader to translate the lab reports appropriately. If the bacteria are identified as bad/pathogenic and you are low, then do not enter them.

BacteriaReported LevelAlso Known asComment
[Eubacterium] hallii [species] | Anaerobutyricum hallii| Anaerobutyricum hallii (Holdeman and Moore 1974) Shetty et al. 2018| ATCC 27751| DSM 3353| Eubacterium hallii| Eubacterium hallii Holdeman and Moore 1974| VPI B4-27
Actinobacteria [phylum] | Actinobacteraeota| Actinobacteraeota Oren et al. 2015| Actinobacteria| Actinobacteriota
Adlercreutzia equolifaciens [species] | Adlercreutzia equolifaciens| Adlercreutzia equolifaciens Maruo et al. 2008| CCUG 54925| DSM 19450| equol-producing bacterium FJC-A10| equol-producing bacterium FJC-B20| equol-producing bacterium FJC-B9| equol-producing bacterium FJC-D53| JCM 14793| strain FJC-B9
Akkermansia muciniphila [species] | Akkermansia muciniphila| Akkermansia muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016| Akkermansia sp. YL44| ATCC BAA-835| CIP 107961| strain Muc
Alistipes [genus] | Alistipes| Alistipes Rautio et al. 2003
Alistipes finegoldii [species] | AHN 2437| Alistipes finegoldii| Alistipes finegoldii Rautio et al. 2003| Bacteroides sp. ANH 2437| CCUG 46020| CIP 107999| DSM 17242| JCM 16770
Alistipes indistinctus [species] | Alistipes indistinctus| Alistipes indistinctus Nagai et al. 2010| DSM 22520| JCM 16068| YIT 12060
Alistipes onderdonkii [species] | Alistipes onderdonkii| Alistipes onderdonkii Song et al. 2006| Alistipes sp. WAL 8169| ATCC BAA-1178| CCUG 48946| DSM 19147| JCM 16771| WAL 8169
Alistipes shahii [species] | Alistipes shahii| Alistipes shahii Song et al. 2006 emend. Hahnke et al. 2016| ATCC BAA-1179| CCUG 48947| JCM 16773| WAL 8301
Anaerotruncus [genus] | Anaerotruncus| Anaerotruncus Lawson et al. 2004
Bacteroidaceae [family] | Bacteroidaceae| Bacteroidaceae Pribram 1933
Bacteroidales [order] | Bacteroidales| Bacteroidales Krieg 2012 emend. Pikuta et al. 2017
Bacteroides [genus] | "Ristella" Prevot 1938| Bacteroides| Bacteroides Castellani and Chalmers 1919 (Approved Lists 1980) emend. Shah and Collins 1989| Capsularis| Capsularis Prevot 1938 (Approved Lists 1980)| Ristella
Bacteroides caccae [species] | ATCC 43185| Bacteroides caccae| Bacteroides caccae Johnson et al. 1986 emend. Hahnke et al. 2016| CCUG 38735| CIP 104201| DSM 19024| JCM 9498| NCTC 13051| VPI 3452A
Bacteroides dorei [species] | Bacteroides dorei| Bacteroides dorei Bakir et al. 2006 emend. Hahnke et al. 2016| Bacteroides sp. 175T| Bacteroides sp. 219| DSM 17855| JCM 13471| strain 175
Bacteroides finegoldii [species] | Bacteroides finegoldii| Bacteroides finegoldii Bakir et al. 2006| DSM 17565| JCM 13345| strain 199
Bacteroides fragilis [species] | "Bacteroides inaequalis" Eggerth and Gagnon 1933| "Bacteroides incommunis" Eggerth and Gagnon 1933| "Bacteroides uncatus" Eggerth and Gagnon 1933| "Fusiformis fragilis" Topley and Wilson 1929| "Pseudobacterium fragilis" Krasil'nikov 1949| "Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Ristella fragilis" Prevot 1938| "Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938| "Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus intermedius" Bergan and Hovig 1968| ATCC 25285| Bacillus fragilis| Bacillus fragilis Veillon and Zuber 1898| Bacteroides fragilis| Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| Bacteroides inaequalis| Bacteroides incommunis| Bacteroides sp. 2_1_16| Bacteroides sp. 2_1_56FAA| Bacteroides uncatus| CCUG 4856| CIP 77.16| DSM 2151| Fusiformis fragilis| JCM 11019| LMG 10263| LMG:10263| NCTC 9343| Pseudobacterium fragilis| Pseudobacterium inaequalis| Pseudobacterium incommunis| Pseudobacterium uncatum| Ristella fragilis| Ristella incommunis| Ristella uncata| Sphaerophorus inaequalis| Sphaerophorus intermedius Pathogen
Bacteroides intestinalis [species] | Bacteroides intestinalis| Bacteroides intestinalis Bakir et al. 2006 emend. Hahnke et al. 2016| DSM 17393| JCM 13265| strain 341
Bacteroides massiliensis [species] | "Candidatus Bacteroides massiliae" Drancourt et al. 2004| Bacteroides massiliensis| Bacteroides massiliensis Fenner et al. 2005 emend. Hahnke et al. 2016| Candidatus Bacteroides massiliae| CCUG 48901| CIP 107942| DSM 17679| JCM 13223| strain B84634
Bacteroides ovatus [species] | "Bacteroides fragilis subsp. ovatus" (Eggerth and Gagnon 1933) Holdeman and Moore 1970| "Pasteurella ovata" (Eggerth and Gagnon 1933) Prevot 1938| "Pseudobacterium ovatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| ATCC 8483| bacterium NLAE-zl-C11| bacterium NLAE-zl-C34| bacterium NLAE-zl-C500| bacterium NLAE-zl-C57| bacterium NLAE-zl-H304| bacterium NLAE-zl-H361| bacterium NLAE-zl-H59| bacterium NLAE-zl-H73| Bacteroides fragilis subsp. ovatus| Bacteroides ovatus| Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| BCRC 10623| CCRC 10623| CCRC:10623| CCUG 4943| CIP 103756| DSM 1896| JCM 5824| NCTC 11153| Pasteurella ovata| Pseudobacterium ovatum
Bacteroides plebeius [species] | Bacteroides plebeius| Bacteroides plebeius Kitahara et al. 2005| DSM 17135| JCM 12973| strain M12
Bacteroides thetaiotaomicron [species] | "Bacillus thetaiotaomicron" Distaso 1912| "Bacteroides fragilis subsp. thetaiotaomicron" (Distaso 1912) Holdeman and Moore 1970| "Pseudobacterium thetaiotaomicron" (Distaso 1912) Krasil'nikov 1949| "Sphaerocillus thetaiotaomicron" (Distaso 1912) Prevot 1938| ATCC 29148| Bacillus thetaiotaomicron| bacterium NLAE-zl-C523| bacterium NLAE-zl-C579| bacterium NLAE-zl-G288| bacterium NLAE-zl-H207| bacterium NLAE-zl-H463| bacterium NLAE-zl-H492| bacterium NLAE-zl-P32| bacterium NLAE-zl-P699| Bacteroides fragilis subsp. thetaiotaomicron| Bacteroides sp. 1_1_6| Bacteroides thetaiotaomicron| Bacteroides thetaiotaomicron (Distaso 1912) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| CCUG 10774| CIP 104206| DSM 2079| JCM 5827| NCTC 10582| Pseudobacterium thetaiotaomicron| Sphaerocillus thetaiotaomicron| VPI 5482
Bacteroides uniformis [species] | ATCC 8492| Bacteroides uniformis| Bacteroides uniformis Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| CCUG 4942| CIP 103695| DSM 6597| JCM 5828| NCTC 13054
Bacteroidia [class] | Bacteroidetes| Bacteroidia| Bacteroidia Krieg 2012
Bacteroidota [phylum] | Bacteroidaeota| Bacteroidaeota Oren et al. 2015| Bacteroides-Cytophaga-Flexibacter group| Bacteroidetes| Bacteroidetes Krieg et al. 2012| Bacteroidota| BCF group| CFB group| CFB group bacteria| Cytophaga-Flexibacter-Bacteroides phylum
Barnesiella [genus] | Barnesiella| Barnesiella Sakamoto et al. 2007 emend. Morotomi et al. 2008
Barnesiella intestinihominis [species] | Barnesiella intestinihominis| Barnesiella intestinihominis Morotomi et al. 2008 emend. Hahnke et al. 2016| Barnesiella sp. YIT 11860| DSM 21032| JCM 15079| YIT 11860
Bifidobacteriaceae [family] | Bifidobacteriaceae| Bifidobacteriaceae Stackebrandt et al. 1997 emend. Zhi et al. 2009
Bifidobacterium [genus] | "Bifidibacterium" Prevot 1938| "Tissieria" Pribram 1929| Bifidibacterium| Bifidobacterium| Bifidobacterium Orla-Jensen 1924| Tissieria
Bifidobacterium adolescentis [species] | AS 1.2190| ATCC 15703| BCRC 14606| Bifidobacterium adolescentis| Bifidobacterium adolescentis Reuter 1963| Bifidobacterium stercoris| Bifidobacterium stercoris Kim et al. 2010| CCRC 14606| CCRC:14606| CCUG 17359| CCUG 18363| CIP 64.59| DSM 20083| DSM 24849 [[Bifidobacterium stercoris]]| JCM 1275| JCM 15918 [[Bifidobacterium stercoris]]| KCTC 5756 [[Bifidobacterium stercoris]]| LMG 10502| LMG:10502| NCAIM B.01822| NCTC 11814| strain Eg1 [[Bifidobacterium stercoris]]
Bifidobacterium longum [species] | AS 1.2186| ATCC 15707| BCRC 11847| Bifidobacterium longum| Bifidobacterium longum Reuter 1963| Bifidobacterium sp. 12_1_47BFAA| CCRC 11847| CCRC:11847| CCUG 28903| CIP 64.62| DSM 20219| HAMBI 554| JCM 1217| KCTC 3128| LMG 10497| LMG 13197| LMG:10497| LMG:13197| NCAIM B.01819| NCFB 2259| NCIMB 702259| NCTC 11818
Bilophila [genus] | Bilophila| Bilophila Baron et al. 1990
Bilophila wadsworthia [species] | ATCC 49260| Bilophila wadsworthia| Bilophila wadsworthia Baron et al. 1990| CCUG 32349| strain 7959| WAL 7959
Blautia [genus] | Blautia| Blautia Liu et al. 2008 emend. Durand et al. 2017
Burkholderiales [order] | Burkholderia/Oxalobacter/Ralstonia group| Burkholderiales| Burkholderiales Garrity et al. 2006
Clostridia [class] | Clostridia| Clostridia Rainey 2010
Coprococcus [genus] | Coprococcus| Coprococcus Holdeman and Moore 1974
Coriobacteriaceae [family] | Coriobacteriaceae| Coriobacteriaceae Stackebrandt et al. 1997 emend. Gupta et al. 2013| Coriobacteriaceae Stackebrandt et al. 1997 emend. Zhi et al. 2009
Desulfovibrio [genus] | "Sporovibrio" Starkey 1938| Desulfomonas| Desulfomonas Moore et al. 1976| Desulfovibrio| Desulfovibrio Kluyver and van Niel 1936 (Approved Lists 1980) emend. Loubinoux et al. 2002| Sporovibrio
Desulfovibrio desulfuricans [species] | "Bacillus desulfuricans" (Beijerinck 1895) Saltet 1900| "Microspira desulfuricans" (Beijerinck 1895) Migula 1900| "Spirillum desulfuricans" Beijerinck 1895| "Vibrio cholinicus" Haywood and Stadtman 1959| "Vibrio cholinicus" Haywood and Statman (sic) 1959| ATCC 29577| Bacillus desulfuricans| CCUG 34226| CIP 107039| Desulfovibrio desulfuricans| Desulfovibrio desulfuricans (Beijerinck 1895) Kluyver and van Niel 1936 (Approved Lists 1980) emend. Shivani et al. 2017| Desulfovibrio desulfuricans subsp. desulfuricans| Desulfovibrio desulfuricans subsp. desulfuricans (Beijerinck 1895) Kluyver and van Niel 1936 (Approved Lists 1980)| DSM 642| LMG 7529| LMG:7529| Microspira desulfuricans| NCIB 8307| NCIB:8307| NCIMB 8307| Spirillum desulfuricans| strain Adams Essex 6| Vibrio cholinicus| VKM B-1799
Desulfovibrionaceae [family] | Desulfovibrionaceae| Desulfovibrionaceae Kuever et al. 2006
Dorea [genus] | Dorea| Dorea Taras et al. 2002
Dorea formicigenerans [species] | ATCC 27755| Dorea formicigenerans| Dorea formicigenerans (Holdeman and Moore 1974) Taras et al. 2002| DSM 3992| Eubacterium formicigenerans| Eubacterium formicigenerans Holdeman and Moore 1974
Dorea longicatena [species] | CCUG 45247| Dorea longicatena| Dorea longicatena Taras et al. 2002| DSM 13814| Eubacterium sp. III-35| JCM 11232| strain 111-35
Enterobacterales [order] | Enterobacterales| Enterobacterales Adeolu et al. 2016| enterobacteria| Enterobacteriaceae and related endosymbionts| Enterobacteriaceae group| Enterobacteriales| gamma-3 proteobacteria
Euryarchaeota [phylum] | "Euryarchaeota" Woese et al. 1990| Euryarchaeota| Euryarchaeota Garrity and Holt 2002| euryarchaeotes| Methanobacteraeota| Methanobacteraeota Oren et al. 2015| Methanobacteriota
Faecalibacterium [genus] | Faecalibacterium| Faecalibacterium Duncan et al. 2002
Faecalibacterium prausnitzii [species] | "Bacillus mucosus anaerobius" Prausnitz 1922| "Bacteroides praussnitzii" (sic) Hauduroy et al. 1937| ATCC 27768| Bacillus mucosus anaerobius| Bacteroides praussnitzii| butyrate-producing bacterium A2-165| Faecalibacterium prausnitzii| Faecalibacterium prausnitzii (Hauduroy et al. 1937) Duncan et al. 2002| Fusobacterium prausnitzii| Fusobacterium prausnitzii (Hauduroy et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)| NCIMB 13872
Firmicutes [phylum] | Bacillaeota| Bacillaeota Oren et al. 2015| Bacillota| Bacillus/Clostridium group| clostridial firmicutes| Clostridium group firmicutes| Firmacutes| Firmicutes| Firmicutes corrig. Gibbons and Murray 1978| Low G+C firmicutes| low G+C Gram-positive bacteria| low GC Gram+
Francisella tularensis [species] | "Bacterium tularense" McCoy and Chapin 1912| "Brucella tularensis" (McCoy and Chapin 1912) Topley and Wilson 1929| "Francisella tularense" (sic) (McCoy and Chapin 1912) Dorofe'ev 1947| "Pasteurella tularensis" (McCoy and Chapin 1912) Bergey et al. 1923| ATCC 6223| Bacterium tularense| Brucella tularensis| Francisella tularense| Francisella tularensis| Francisella tularensis (McCoy and Chapin 1912) Dorofe'ev 1947| GIEM Schu| Pasteurella tularensis| strain B-38 Pathogen
Lachnospira [genus] | Lachnospira| Lachnospira Bryant and Small 1956
Lachnospiraceae [family] | Lachnospiraceae| Lachnospiraceae Rainey 2010
Lactococcus [genus] | lactic streptococci| Lactococcus| Lactococcus Schleifer et al. 1986
Lactococcus lactis [species] | "Bacterium lactis" Lister 1873| ATCC 19435| Bacterium lactis| CCUG 32211| CCUG 7980| CIP 70.56| DSM 20481| HAMBI 1591| JCM 5805| Lactococcus lactis| Lactococcus lactis (Lister 1873) Schleifer et al. 1986| LMG 6890| LMG:6890| NBRC 100933| NCDO 604| NCIMB 6681| NCTC 6681| Streptococcus lactis| Streptococcus lactis (Lister 1873) Lohnis 1909 (Approved Lists 1980)| VKM B-1662
Odoribacter [genus] | Odoribacter| Odoribacter Hardham et al. 2008
Odoribacter splanchnicus [species] | ATCC 29572| Bacteroides splanchnicus| Bacteroides splanchnicus Werner et al. 1975| CCUG 21054 A| CIP 104287| DSM 20712| JCM 15291| LMG 8202| LMG:8202| NCTC 10825| Odoribacter splanchnicus| Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008 emend. Hahnke et al. 2016
Oxalobacter [genus] | Oxalobacter| Oxalobacter Allison et al. 1985
Oxalobacter formigenes [species] | ATCC 35274| CIP 106513| Oxalobacter formigenes| Oxalobacter formigenes Allison et al. 1985| strain OxB
Parabacteroides [genus] | Parabacteroides| Parabacteroides Sakamoto and Benno 2006 BMI, fat percent,blood pressure
Parabacteroides distasonis [species] | "Bacteroides fragilis subsp. distasonis" (Eggerth and Gagnon 1933) Holdeman and Moore 1970| "Pseudobacterium distasonis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Ristella distasonis" (Eggerth and Gagnon 1933) Prevot 1938| ATCC 8503| Bacteroides distasonis| Bacteroides distasonis Eggerth and Gagnon 1933 (Approved Lists 1980)| Bacteroides fragilis subsp. distasonis| CCUG 4941| CIP 104284| DSM 20701| JCM 5825| NCTC 11152| Parabacteroides distasonis| Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016| Pseudobacterium distasonis| Ristella distasonis
Parabacteroides johnsonii [species] | DSM 18315| JCM 13406| Parabacteroides johnsonii| Parabacteroides johnsonii Sakamoto et al. 2007 emend. Hahnke et al. 2016| strain M-165
Parabacteroides merdae [species] | ATCC 43184| Bacteroides merdae| Bacteroides merdae Johnson et al. 1986| CCUG 38734| CIP 104202| JCM 9497| NCTC 13052| Parabacteroides merdae| Parabacteroides merdae (Johnson et al. 1986) Sakamoto and Benno 2006 emend. Hahnke et al. 2016| VPI T4-1
Parasutterella [genus] | Parasutterella| Parasutterella Nagai et al. 2009
Parasutterella excrementihominis [species] | DSM 21040| JCM 15078| Parasutterella excrementihominis| Parasutterella excrementihominis Nagai et al. 2009| strain YIT 11859
Porphyromonadaceae [family] | Porphyromonadaceae| Porphyromonadaceae Krieg 2012 emend. Ormerod et al. 2016
Proteobacteria [phylum] | Alphaproteobacteraeota| Alphaproteobacteraeota Oren et al. 2015| Alphaproteobacteriota| Proteobacteria| Proteobacteria [class] Stackebrandt et al. 1988| Proteobacteria Garrity et al. 2005| purple bacteria| purple bacteria and relatives| purple non-sulfur bacteria| purple photosynthetic bacteria| purple photosynthetic bacteria and relatives
Roseburia [genus] | Roseburia| Roseburia Stanton and Savage 1983| Roseburya| Roseburyella
Roseburia hominis [species] | DSM 16839| NCIMB 14029| Roseburia hominis| Roseburia hominis Duncan et al. 2006| strain A2-183
Roseburia intestinalis [species] | DSM 14610| NCIMB 13810| Roseburia intestinalis| Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006| strain L1-82
Roseburia inulinivorans [species] | butyrate-producing bacterium A2-194| butyrate-producing bacterium L1-83| DSM 16841| NCIMB 14030| Roseburia inulinivorans| Roseburia inulinivorans Duncan et al. 2006| strain A2-194
Ruminococcaceae [family] | Ruminococcaceae| Ruminococcaceae Rainey 2010
Ruminococcus bromii [species] | ATCC 27255| Ruminococcus bromii| Ruminococcus bromii Moore et al. 1972
Ruminococcus lactaris [species] | ATCC 29176| Ruminococcus lactaris| Ruminococcus lactaris Moore et al. 1976
Streptococcus [genus] | Streptococcus| Streptococcus Rosenbach 1884
Subdoligranulum [genus] | Subdoligranulum| Subdoligranulum Holmstrom et al. 2004
Verrucomicrobia [phylum] | Verrucomicrobaeota| Verrucomicrobaeota Oren et al. 2015| Verrucomicrobia| Verrucomicrobia (Hedlund et al. 1997) Yoon et al. 2010| Verrucomicrobia Hedlund 2012| Verrucomicrobiota

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